DeNovoGenesDB

H. sapiens

The Rules Panel enables users to set the desired criteria for identifying de novo emerged genes, while the Output Panel facilitates filtering and analysis of the resulting list.

The default table displayed was generated with the default parameters of the DENSE workflow:

• TRGs at Hominidae level
• Hit in non-coding regions (NCR) of outgroup species validated
• Microsynteny validated (1 on core up- & downstream in a window of 4 genes)

However, you can try out your own combination of some of these settings using the Rules box below.

Visible columns

• CDS
• Code
• Gene
• Phylostratum
• Rank
• Protein size
• Is denovo?
• Is orphan?
• Is TRG?

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CDS	Code	Gene	Phylostratum	Rank	Protein size	Is denovo?	Is orphan?	Is TRG?
rna-NM_205837.3	NM_205837.3	LST1	Eutheria	18	66	✘	✘	✘
rna-NM_205837.3-2	NM_205837.3	LST1	Eutheria	18	66	✘	✘	✘
rna-NM_205837.3-3	NM_205837.3	LST1	Eutheria	18	66	✘	✘	✘
rna-NM_205837.3-4	NM_205837.3	LST1	Eutheria	18	66	✘	✘	✘
rna-NM_205837.3-5	NM_205837.3	LST1	Eutheria	18	66	✘	✘	✘
rna-NM_205837.3-6	NM_205837.3	LST1	Eutheria	18	66	✘	✘	✘
rna-NM_205837.3-7	NM_205837.3	LST1	Eutheria	18	66	✘	✘	✘
rna-NM_205837.3-8	NM_205837.3	LST1	Eutheria	18	66	✘	✘	✘
rna-NM_205838.3	NM_205838.3	LST1	Tetrapoda	14	66	✘	✘	✘
rna-NM_205838.3-2	NM_205838.3	LST1	Tetrapoda	14	66	✘	✘	✘
rna-NM_205838.3-3	NM_205838.3	LST1	Tetrapoda	14	66	✘	✘	✘
rna-NM_205838.3-4	NM_205838.3	LST1	Tetrapoda	14	66	✘	✘	✘
rna-NM_205838.3-5	NM_205838.3	LST1	Tetrapoda	14	66	✘	✘	✘
rna-NM_205838.3-6	NM_205838.3	LST1	Tetrapoda	14	66	✘	✘	✘
rna-NM_205838.3-7	NM_205838.3	LST1	Tetrapoda	14	66	✘	✘	✘
rna-NM_205838.3-8	NM_205838.3	LST1	Tetrapoda	14	66	✘	✘	✘
rna-XM_017001226.2	XM_017001226.2	SVBP	Vertebrata	9	66	✘	✘	✘
rna-XM_017013724.1	XM_017013724.1	DEFB134	Theria	17	66	✘	✘	✘
rna-XM_047422075.1	XM_047422075.1	DEFB134	Theria	17	66	✘	✘	✘
rna-XM_047428956.1	XM_047428956.1	KLRF1	Eutheria	18	66	✘	✘	✘
rna-XM_047435017.1	XM_047435017.1	LOC124903713	Catarrhini	24	66	✘	✘	✘
rna-XM_054332251.1	XM_054332251.1	DEFB134	Theria	17	66	✘	✘	✘
rna-NM_001030001.4	NM_001030001.4	RPS29	cellular organisms	1	67	✘	✘	✘
rna-NM_001037497.2	NM_001037497.2	DEFB110	Eutheria	18	67	✘	✘	✘
rna-NM_001081551.4	NM_001081551.4	DEFB103A	Mammalia	16	67	✘	✘	✘
rna-NM_001081551.4-2	NM_001081551.4	DEFB103A	Mammalia	16	67	✘	✘	✘
rna-NM_001145432.3	NM_001145432.3	SMIM20	Opisthokonta	3	67	✘	✘	✘
rna-NM_001160166.2	NM_001160166.2	HRH4	Bilateria	6	67	✘	✘	✘
rna-NM_001195307.2	NM_001195307.2	BBIP1	Eumetazoa	5	67	✘	✘	✘
rna-NM_001199052.2	NM_001199052.2	LEMD1	Eutheria	18	67	✘	✘	✘
rna-NM_001286525.2	NM_001286525.2	CENPW	Eutheria	18	67	✘	✘	✘
rna-NM_001353403.1	NM_001353403.1	NDUFAF8	Catarrhini	24	67	✘	✘	✘
rna-NM_001385673.1	NM_001385673.1	SAA2	Possible contamination or HGT	X	67	✘	✘	✘
rna-NM_001414902.1	NM_001414902.1	LOC128092249	Possible contamination or HGT	X	67	✘	✘	✘
rna-NM_016326.3	NM_016326.3	CKLF	Theria	17	67	✘	✘	✘
rna-NM_016541.3	NM_016541.3	GNG13	Eumetazoa	5	67	✘	✘	✘
rna-NM_018661.4	NM_018661.4	DEFB103B	Mammalia	16	67	✘	✘	✘
rna-NM_018661.4-2	NM_018661.4	DEFB103B	Mammalia	16	67	✘	✘	✘
rna-NM_018661.4-3	NM_018661.4	DEFB103B	Mammalia	16	67	✘	✘	✘
rna-NM_021128.5	NM_021128.5	POLR2L	cellular organisms	1	67	✘	✘	✘
rna-NM_033031.3-2	NM_033031.3	CCNB3	Eutheria	18	67	✘	✘	✘
rna-NM_033670.4-2	NM_033670.4	CCNB3	Eutheria	18	67	✘	✘	✘
rna-NM_153324.4	NM_153324.4	DEFB123	Mammalia	16	67	✘	✘	✘
rna-XM_017010845.2	XM_017010845.2	CENPW	Eutheria	18	67	✘	✘	✘
rna-XM_047434586.1	XM_047434586.1	LEMD1	Eutheria	18	67	✘	✘	✘
id-IGHVII-46-1	IGHVII-46-1	IGHVII-46-1	Homo sapiens	28	68	✘	✘	✘
id-IGHVII-46-1-2	IGHVII-46-1	IGHVII-46-1	Homo sapiens	28	68	✘	✘	✘
rna-NM_001011669.3	NM_001011669.3	CHCHD7	Boreoeutheria	19	68	✘	✘	✘
rna-NM_001012456.2	NM_001012456.2	SEC61G	cellular organisms	1	68	✘	✘	✘
rna-NM_001017998.4	NM_001017998.4	GNG10	Eumetazoa	5	68	✘	✘	✘
rna-NM_001018024.3	NM_001018024.3	CMC4	Eukaryota	2	68	✘	✘	✘
rna-NM_001102566.2	NM_001102566.2	PCP4L1	Bilateria	6	68	✘	✘	✘
rna-NM_001142476.1	NM_001142476.1	NREP	Tetrapoda	14	68	✘	✘	✘
rna-NM_001142477.1	NM_001142477.1	NREP	Tetrapoda	14	68	✘	✘	✘
rna-NM_001142478.2	NM_001142478.2	NREP	Tetrapoda	14	68	✘	✘	✘
rna-NM_001142479.1	NM_001142479.1	NREP	Tetrapoda	14	68	✘	✘	✘
rna-NM_001142480.1	NM_001142480.1	NREP	Tetrapoda	14	68	✘	✘	✘
rna-NM_001142481.1	NM_001142481.1	NREP	Tetrapoda	14	68	✘	✘	✘
rna-NM_001142482.1	NM_001142482.1	NREP	Tetrapoda	14	68	✘	✘	✘
rna-NM_001142483.1	NM_001142483.1	NREP	Tetrapoda	14	68	✘	✘	✘
rna-NM_001165884.3	NM_001165884.3	ZNF268	Boreoeutheria	19	68	✘	✘	✘
rna-NM_001195637.2	NM_001195637.2	CCDC179	Tetrapoda	14	68	✘	✘	✘
rna-NM_001198664.2	NM_001198664.2	GNG10	Eumetazoa	5	68	✘	✘	✘
rna-NM_001243203.2	NM_001243203.2	RANBP6	Amniota	15	68	✘	✘	✘
rna-NM_001271592.2	NM_001271592.2	SMIM10L1	Gnathostomata	10	68	✘	✘	✘
rna-NM_001271592.2-2	NM_001271592.2	SMIM10L1	Gnathostomata	10	68	✘	✘	✘
rna-NM_001271592.2-3	NM_001271592.2	SMIM10L1	Gnathostomata	10	68	✘	✘	✘
rna-NM_001271680.2	NM_001271680.2	CYLC1	Tetrapoda	14	68	✘	✘	✘
rna-NM_001271811.2	NM_001271811.2	MED21	Eumetazoa	5	68	✘	✘	✘
rna-NM_001291474.2	NM_001291474.2	CCL4L2	Simiiformes	23	68	✘	✘	✘
rna-NM_001291474.2-2	NM_001291474.2	CCL4L2	Simiiformes	23	68	✘	✘	✘
rna-NM_001291474.2-3	NM_001291474.2	CCL4L2	Simiiformes	23	68	✘	✘	✘
rna-NM_001297770.2	NM_001297770.2	MRPS18C	Eutheria	18	68	✘	✘	✘
rna-NM_001317167.1	NM_001317167.1	SNRPG	cellular organisms	1	68	✘	✘	✘
rna-NM_001317858.2	NM_001317858.2	CHCHD7	Boreoeutheria	19	68	✘	✘	✘
rna-NM_001329613.2	NM_001329613.2	SNAPC5	Gnathostomata	10	68	✘	✘	✘
rna-NM_001348129.2	NM_001348129.2	NBDY	Eutheria	18	68	✘	✘	✘
rna-NM_001394150.1	NM_001394150.1	LOC102723553	Hominidae	26	68	✘	✘	✘
rna-NM_001394151.1	NM_001394151.1	LOC102723553	Hominidae	26	68	✘	✘	✘
rna-NM_001395940.1	NM_001395940.1	SMIM45	Gnathostomata	10	68	✘	✘	✘
rna-NM_001395941.1	NM_001395941.1	SMIM45	Gnathostomata	10	68	✘	✘	✘
rna-NM_001395942.1	NM_001395942.1	SMIM45	Gnathostomata	10	68	✘	✘	✘
rna-NM_001395943.1	NM_001395943.1	SMIM45	Gnathostomata	10	68	✘	✘	✘
rna-NM_001395944.1	NM_001395944.1	SMIM45	Gnathostomata	10	68	✘	✘	✘
rna-NM_001395945.1	NM_001395945.1	SMIM45	Gnathostomata	10	68	✘	✘	✘
rna-NM_001395946.1	NM_001395946.1	SMIM45	Gnathostomata	10	68	✘	✘	✘
rna-NM_001395947.1	NM_001395947.1	SMIM45	Gnathostomata	10	68	✘	✘	✘
rna-NM_001395948.1	NM_001395948.1	SMIM45	Gnathostomata	10	68	✘	✘	✘
rna-NM_001395949.1	NM_001395949.1	SMIM45	Gnathostomata	10	68	✘	✘	✘
rna-NM_001395950.1	NM_001395950.1	SMIM45	Gnathostomata	10	68	✘	✘	✘
rna-NM_001395951.1	NM_001395951.1	SMIM45	Gnathostomata	10	68	✘	✘	✘
rna-NM_001395952.1	NM_001395952.1	SMIM45	Gnathostomata	10	68	✘	✘	✘
rna-NM_001395995.1	NM_001395995.1	SAGSIN1	Gnathostomata	10	68	✘	✘	✘
rna-NM_001396022.1	NM_001396022.1	GNG5B	Eumetazoa	5	68	✘	✘	✘
rna-NM_001414892.1	NM_001414892.1	LOC128071544	Possible contamination or HGT	X	68	✘	✘	✘
rna-NM_004045.4	NM_004045.4	ATOX1	cellular organisms	1	68	✘	✘	✘
rna-NM_004772.4	NM_004772.4	NREP	Tetrapoda	14	68	✘	✘	✘
rna-NM_005218.4	NM_005218.4	DEFB1	Amniota	15	68	✘	✘	✘
rna-NM_005218.4-2	NM_005218.4	DEFB1	Amniota	15	68	✘	✘	✘
rna-NM_005274.3	NM_005274.3	GNG5	Eumetazoa	5	68	✘	✘	✘

Total number of records: 144892

Records per page: 10 | 20 | 50 | 100

Rules ^†

Hit in NCR*

Hit in NCR* and valid synteny

Hit in NCR* in outgroup

Hit in NCR* in outgroup and valid synteny

*NCR: Non-Coding Regions Apply

Output

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Select phylostratum 1 - cellular organisms 2 - Eukaryota 3 - Opisthokonta 4 - Metazoa 5 - Eumetazoa 6 - Bilateria 7 - Deuterostomia 8 - Chordata 9 - Vertebrata 10 - Gnathostomata 11 - Euteleostomi 12 - Sarcopterygii 13 - Dipnotetrapodomorpha 14 - Tetrapoda 15 - Amniota 16 - Mammalia 17 - Theria 18 - Eutheria 19 - Boreoeutheria 20 - Euarchontoglires 21 - Primates 23 - Simiiformes 24 - Catarrhini 25 - Hominoidea 26 - Hominidae 27 - Homininae 28 - Homo sapiens X - Unknown X - Possible contamination or HGT

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Phylogeny

_____ H. sapiens | __| __ P. troglodytes | |__| __| |__ P. paniscus | | __| |________ G. gorilla | | _| |___________ P. abelii | |______________ N. leucogenys