DeNovoGenesDB

H. sapiens

The Rules Panel enables users to set the desired criteria for identifying de novo emerged genes, while the Output Panel facilitates filtering and analysis of the resulting list.

The default table displayed was generated with the default parameters of the DENSE workflow:

• TRGs at Hominidae level
• Hit in non-coding regions (NCR) of outgroup species validated
• Microsynteny validated (1 on core up- & downstream in a window of 4 genes)

However, you can try out your own combination of some of these settings using the Rules box below.

Visible columns

• CDS
• Code
• Gene
• Phylostratum
• Rank
• Protein size
• Is denovo?
• Is orphan?
• Is TRG?

Table content is loading...

CDS	Code	Gene	Phylostratum	Rank	Protein size	Is denovo?	Is orphan?	Is TRG?
id-TRDD1	TRDD1	TRDD1	Unknown	X	2	✘	✘	✘
id-IGHD7-27	IGHD7-27	IGHD7-27	Unknown	X	3	✘	✘	✘
id-IGHD7-27-2	IGHD7-27	IGHD7-27	Unknown	X	3	✘	✘	✘
id-TRDD2	TRDD2	TRDD2	Unknown	X	3	✘	✘	✘
id-TRBD1	TRBD1	TRBD1	Unknown	X	4	✘	✘	✘
id-TRBD1-2	TRBD1	TRBD1	Unknown	X	4	✘	✘	✘
id-TRDD3	TRDD3	TRDD3	Unknown	X	4	✘	✘	✘
rna-NM_001301773.2-2	NM_001301773.2	LDAF1	Unknown	X	4	✘	✘	✘
rna-NM_001301774.2-2	NM_001301774.2	LDAF1	Unknown	X	4	✘	✘	✘
id-IGHD1-1	IGHD1-1	IGHD1-1	Unknown	X	5	✘	✘	✘
id-IGHD1-1-2	IGHD1-1	IGHD1-1	Unknown	X	5	✘	✘	✘
id-IGHD1-14	IGHD1-14	IGHD1-14	Unknown	X	5	✘	✘	✘
id-IGHD1-14-2	IGHD1-14	IGHD1-14	Unknown	X	5	✘	✘	✘
id-IGHD1-20	IGHD1-20	IGHD1-20	Unknown	X	5	✘	✘	✘
id-IGHD1-20-2	IGHD1-20	IGHD1-20	Unknown	X	5	✘	✘	✘
id-IGHD1-7	IGHD1-7	IGHD1-7	Unknown	X	5	✘	✘	✘
id-IGHD1-7-2	IGHD1-7	IGHD1-7	Unknown	X	5	✘	✘	✘
id-IGHD4-11	IGHD4-11	IGHD4-11	Unknown	X	5	✘	✘	✘
id-IGHD4-11-2	IGHD4-11	IGHD4-11	Unknown	X	5	✘	✘	✘
id-IGHD4-17	IGHD4-17	IGHD4-17	Unknown	X	5	✘	✘	✘
id-IGHD4-17-2	IGHD4-17	IGHD4-17	Unknown	X	5	✘	✘	✘
id-IGHD4-4	IGHD4-4	IGHD4-4	Unknown	X	5	✘	✘	✘
id-IGHD4-4-2	IGHD4-4	IGHD4-4	Unknown	X	5	✘	✘	✘
id-TRBD2	TRBD2	TRBD2	Unknown	X	5	✘	✘	✘
id-TRBD2-2	TRBD2	TRBD2	Unknown	X	5	✘	✘	✘
id-IGHD1-26	IGHD1-26	IGHD1-26	Unknown	X	6	✘	✘	✘
id-IGHD1-26-2	IGHD1-26	IGHD1-26	Unknown	X	6	✘	✘	✘
id-IGHD4-23	IGHD4-23	IGHD4-23	Unknown	X	6	✘	✘	✘
id-IGHD4-23-2	IGHD4-23	IGHD4-23	Unknown	X	6	✘	✘	✘
id-IGHD5-18	IGHD5-18	IGHD5-18	Unknown	X	6	✘	✘	✘
id-IGHD5-18-2	IGHD5-18	IGHD5-18	Unknown	X	6	✘	✘	✘
id-IGHD5-24	IGHD5-24	IGHD5-24	Unknown	X	6	✘	✘	✘
id-IGHD5-24-2	IGHD5-24	IGHD5-24	Unknown	X	6	✘	✘	✘
id-IGHD5-5	IGHD5-5	IGHD5-5	Unknown	X	6	✘	✘	✘
id-IGHD5-5-2	IGHD5-5	IGHD5-5	Unknown	X	6	✘	✘	✘
id-IGHD6-25	IGHD6-25	IGHD6-25	Unknown	X	6	✘	✘	✘
id-IGHD6-25-2	IGHD6-25	IGHD6-25	Unknown	X	6	✘	✘	✘
id-IGHD6-6	IGHD6-6	IGHD6-6	Unknown	X	6	✘	✘	✘
id-IGHD6-6-2	IGHD6-6	IGHD6-6	Unknown	X	6	✘	✘	✘
id-IGHD5-12	IGHD5-12	IGHD5-12	Unknown	X	7	✘	✘	✘
id-IGHD5-12-2	IGHD5-12	IGHD5-12	Unknown	X	7	✘	✘	✘
id-IGHD6-13	IGHD6-13	IGHD6-13	Unknown	X	7	✘	✘	✘
id-IGHD6-13-2	IGHD6-13	IGHD6-13	Unknown	X	7	✘	✘	✘
id-IGHD6-19	IGHD6-19	IGHD6-19	Unknown	X	7	✘	✘	✘
id-IGHD6-19-2	IGHD6-19	IGHD6-19	Unknown	X	7	✘	✘	✘
id-IGHD2-21	IGHD2-21	IGHD2-21	Unknown	X	9	✘	✘	✘
id-IGHD2-21-2	IGHD2-21	IGHD2-21	Unknown	X	9	✘	✘	✘
id-IGHD2-15	IGHD2-15	IGHD2-15	Unknown	X	10	✘	✘	✘
id-IGHD2-15-2	IGHD2-15	IGHD2-15	Unknown	X	10	✘	✘	✘
id-IGHD2-2	IGHD2-2	IGHD2-2	Unknown	X	10	✘	✘	✘
id-IGHD2-2-2	IGHD2-2	IGHD2-2	Unknown	X	10	✘	✘	✘
id-IGHD2-8	IGHD2-8	IGHD2-8	Unknown	X	10	✘	✘	✘
id-IGHD2-8-2	IGHD2-8	IGHD2-8	Unknown	X	10	✘	✘	✘
id-IGHD3-10	IGHD3-10	IGHD3-10	Unknown	X	10	✘	✘	✘
id-IGHD3-10-2	IGHD3-10	IGHD3-10	Unknown	X	10	✘	✘	✘
id-IGHD3-22	IGHD3-22	IGHD3-22	Unknown	X	10	✘	✘	✘
id-IGHD3-22-2	IGHD3-22	IGHD3-22	Unknown	X	10	✘	✘	✘
id-IGHD3-3	IGHD3-3	IGHD3-3	Unknown	X	10	✘	✘	✘
id-IGHD3-3-2	IGHD3-3	IGHD3-3	Unknown	X	10	✘	✘	✘
id-IGHD3-9	IGHD3-9	IGHD3-9	Unknown	X	10	✘	✘	✘
id-IGHD3-9-2	IGHD3-9	IGHD3-9	Unknown	X	10	✘	✘	✘
id-IGHD3-16	IGHD3-16	IGHD3-16	Unknown	X	12	✘	✘	✘
id-IGHD3-16-2	IGHD3-16	IGHD3-16	Unknown	X	12	✘	✘	✘
id-IGKJ1	IGKJ1	IGKJ1	Unknown	X	12	✘	✘	✘
id-IGKJ2	IGKJ2	IGKJ2	Unknown	X	12	✘	✘	✘
id-IGKJ3	IGKJ3	IGKJ3	Unknown	X	12	✘	✘	✘
id-IGKJ4	IGKJ4	IGKJ4	Unknown	X	12	✘	✘	✘
id-IGKJ5	IGKJ5	IGKJ5	Unknown	X	12	✘	✘	✘
id-IGLJ1	IGLJ1	IGLJ1	Unknown	X	12	✘	✘	✘
id-IGLJ2	IGLJ2	IGLJ2	Unknown	X	12	✘	✘	✘
id-IGLJ3	IGLJ3	IGLJ3	Unknown	X	12	✘	✘	✘
id-IGLJ4	IGLJ4	IGLJ4	Unknown	X	12	✘	✘	✘
id-IGLJ5	IGLJ5	IGLJ5	Unknown	X	12	✘	✘	✘
id-IGLJ6	IGLJ6	IGLJ6	Unknown	X	12	✘	✘	✘
id-IGLJ7	IGLJ7	IGLJ7	Unknown	X	12	✘	✘	✘
rna-NM_001416403.1	NM_001416403.1	LOC128462377	Unknown	X	12	✘	✘	✘
rna-NM_001417603.1	NM_001417603.1	LOC128462377	Unknown	X	13	✘	✘	✘
id-TRBJ1-1	TRBJ1-1	TRBJ1-1	Unknown	X	15	✘	✘	✘
id-TRBJ1-1-2	TRBJ1-1	TRBJ1-1	Unknown	X	15	✘	✘	✘
id-TRBJ1-2	TRBJ1-2	TRBJ1-2	Unknown	X	15	✘	✘	✘
id-TRBJ1-2-2	TRBJ1-2	TRBJ1-2	Unknown	X	15	✘	✘	✘
id-TRBJ2-2P	TRBJ2-2P	TRBJ2-2P	Unknown	X	15	✘	✘	✘
id-TRBJ2-2P-2	TRBJ2-2P	TRBJ2-2P	Unknown	X	15	✘	✘	✘
id-TRBJ2-7	TRBJ2-7	TRBJ2-7	Unknown	X	15	✘	✘	✘
id-TRBJ2-7-2	TRBJ2-7	TRBJ2-7	Unknown	X	15	✘	✘	✘
id-TRDJ4	TRDJ4	TRDJ4	Unknown	X	15	✘	✘	✘
id-IGHJ4	IGHJ4	IGHJ4	Unknown	X	16	✘	✘	✘
id-IGHJ4-2	IGHJ4	IGHJ4	Unknown	X	16	✘	✘	✘
id-TRBJ1-3	TRBJ1-3	TRBJ1-3	Homininae	27	16	✘	✘	✘
id-TRBJ1-3-2	TRBJ1-3	TRBJ1-3	Homininae	27	16	✘	✘	✘
id-TRBJ1-5	TRBJ1-5	TRBJ1-5	Homo sapiens	28	16	✘	✘	✘
id-TRBJ1-5-2	TRBJ1-5	TRBJ1-5	Homo sapiens	28	16	✘	✘	✘
id-TRBJ2-1	TRBJ2-1	TRBJ2-1	Homo sapiens	28	16	✘	✘	✘
id-TRBJ2-1-2	TRBJ2-1	TRBJ2-1	Homo sapiens	28	16	✘	✘	✘
id-TRBJ2-2	TRBJ2-2	TRBJ2-2	Unknown	X	16	✘	✘	✘
id-TRBJ2-2-2	TRBJ2-2	TRBJ2-2	Unknown	X	16	✘	✘	✘
id-TRBJ2-3	TRBJ2-3	TRBJ2-3	Unknown	X	16	✘	✘	✘
id-TRBJ2-3-2	TRBJ2-3	TRBJ2-3	Unknown	X	16	✘	✘	✘
id-TRBJ2-4	TRBJ2-4	TRBJ2-4	Unknown	X	16	✘	✘	✘
id-TRBJ2-4-2	TRBJ2-4	TRBJ2-4	Unknown	X	16	✘	✘	✘

Total number of records: 144892

Records per page: 10 | 20 | 50 | 100

Rules ^†

Hit in NCR*

Hit in NCR* and valid synteny

Hit in NCR* in outgroup

Hit in NCR* in outgroup and valid synteny

*NCR: Non-Coding Regions Apply

Output

Search entry by name

Select de novo status

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Select orphan status

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Select phylostratum 1 - cellular organisms 2 - Eukaryota 3 - Opisthokonta 4 - Metazoa 5 - Eumetazoa 6 - Bilateria 7 - Deuterostomia 8 - Chordata 9 - Vertebrata 10 - Gnathostomata 11 - Euteleostomi 12 - Sarcopterygii 13 - Dipnotetrapodomorpha 14 - Tetrapoda 15 - Amniota 16 - Mammalia 17 - Theria 18 - Eutheria 19 - Boreoeutheria 20 - Euarchontoglires 21 - Primates 23 - Simiiformes 24 - Catarrhini 25 - Hominoidea 26 - Hominidae 27 - Homininae 28 - Homo sapiens X - Unknown X - Possible contamination or HGT

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Phylogeny

_____ H. sapiens | __| __ P. troglodytes | |__| __| |__ P. paniscus | | __| |________ G. gorilla | | _| |___________ P. abelii | |______________ N. leucogenys