Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
1VQ8_W
|
1VQ8_9
|
7O7Y_BF
|
7O7Y_B7
|
Conserved?
|
---|---|---|---|---|
W:130 [HIS] | 9:3086 [G] | BF:224 [THR] | B7:83 [A] | ✔ |
W:130 [HIS] | 9:3088 [G] | BF:224 [THR] | B7:85 [G] | ✔ |
W:46 [ALA] | 9:3099 [U] | BF:133 [ARG] | B7:96 [U] | ✔ |
W:46 [ALA] | 9:3100 [G] | BF:133 [ARG] | B7:97 [G] | ✔ |
W:129 [LYS] | 9:3086 [G] | BF:223 [THR] | B7:83 [A] | ✔ |
W:129 [LYS] | 9:3087 [U] | BF:223 [THR] | B7:84 [U] | ✔ |
W:129 [LYS] | 9:3088 [G] | BF:223 [THR] | B7:85 [G] | ✔ |
W:50 [ASP] | 9:3084 [G] | BF:137 [PRO] | B7:81 [G] | ✔ |
W:50 [ASP] | 9:3085 [A] | BF:137 [PRO] | B7:82 [G] | ✔ |
W:134 [GLU] | 9:3097 [U] | BF:228 [GLU] | B7:94 [C] | ✔ |
W:134 [GLU] | 9:3098 [C] | BF:228 [GLU] | B7:95 [C] | ✔ |
W:8 [ARG] | 9:3085 [A] | BF:95 [ARG] | B7:82 [G] | ✔ |
W:8 [ARG] | 9:3086 [G] | BF:95 [ARG] | B7:83 [A] | ✔ |
W:133 [LYS] | 9:3098 [C] | BF:227 [VAL] | B7:95 [C] | ✔ |
W:133 [LYS] | 9:3099 [U] | BF:227 [VAL] | B7:96 [U] | ✔ |
W:131 [PRO] | 9:3098 [C] | BF:225 [HIS] | B7:95 [C] | ✔ |
W:47 [LYS] | 9:3084 [G] | BF:134 [ILE] | B7:81 [G] | ✔ |
W:49 [ASN] | 9:3099 [U] | BF:136 [GLU] | B7:96 [U] | ✔ |
W:130 [HIS] | 9:3087 [U] | BF:224 [THR] | B7:84 [U] | ❌ 7O7Y_BF_B7 |
W:50 [ASP] | 9:3098 [C] | BF:137 [PRO] | B7:95 [C] | ❌ 7O7Y_BF_B7 |
W:129 [LYS] | 9:3085 [A] | BF:223 [THR] | B7:82 [G] | ❌ 1VQ8_W_9 |
W:130 [HIS] | 9:3085 [A] | BF:224 [THR] | B7:82 [G] | ❌ 1VQ8_W_9 |
W:131 [PRO] | 9:3099 [U] | BF:225 [HIS] | B7:96 [U] | ❌ 1VQ8_W_9 |
W:134 [GLU] | 9:3086 [G] | BF:228 [GLU] | B7:83 [A] | ❌ 1VQ8_W_9 |
W:134 [GLU] | 9:3085 [A] | BF:228 [GLU] | B7:82 [G] | ❌ 1VQ8_W_9 |
W:46 [ALA] | 9:3083 [G] | BF:133 [ARG] | B7:80 [U] | ❌ 7O7Y_B7:80 no longer at interface |
W:51 [PHE] | 9:3084 [G] | BF:138 [TYR] | B7:81 [G] | ❌ 7O7Y_BF:138 no longer at interface |
W:51 [PHE] | 9:3085 [A] | BF:138 [TYR] | B7:82 [G] | ❌ 7O7Y_BF:138 no longer at interface |
W:17 [ILE] | 9:3084 [G] | BF:104 [VAL] | B7:81 [G] | ❌ 7O7Y_BF:104 no longer at interface |
W:138 [LEU] | 9:3085 [A] | BF:232 [ALA] | B7:82 [G] | ❌ 7O7Y_BF:232 no longer at interface |
W:128 [VAL] | 9:3086 [G] | BF:222 [LYS] | B7:83 [A] | ❌ 7O7Y_BF:222 no longer at interface |
W:14 [HIS] | 9:3084 [G] | BF:101 [SER] | B7:81 [G] | ❌ 7O7Y_BF:101 no longer at interface |
W:14 [HIS] | 9:3085 [A] | BF:101 [SER] | B7:82 [G] | ❌ 7O7Y_BF:101 no longer at interface |
W:127 [GLY] | 9:3088 [G] | BF:221 [LYS] | B7:85 [G] | ❌ 1VQ8_W:127 no longer at interface |
W:127 [GLY] | 9:3086 [G] | BF:221 [LYS] | B7:83 [A] | ❌ 1VQ8_W:127 no longer at interface |
W:127 [GLY] | 9:3087 [U] | BF:221 [LYS] | B7:84 [U] | ❌ 1VQ8_W:127 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribosomal protein L30p/L7e | 5S ribosomal RNA | 0.85 | 1.15 | 0.18 | 0.86 | 0.83 | 0.91 | 1.0 | 0.74 | 0.50 | 0.00 | 0.61 |
Other pairs involving 1VQ8_W_9 or 7O7Y_BF_B7
Total number of entries: 5
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6AZ3_c_8 | 7O7Y_BF_B7 | 0.90 | 0.95 | 0.44 | 0.44 | Ribosomal protein L30p/L7e | 5S ribosomal RNA | compare |
1YHQ_W_9 | 7O7Y_BF_B7 | 0.74 | 0.85 | 1.14 | 0.18 | Ribosomal protein L30p/L7e | 5S ribosomal RNA | compare |
1VQ8_W_9 | 1YHQ_W_9 | 0.99 | 1.0 | 0.11 | 1.0 | Ribosomal protein L30p/L7e | 5S ribosomal RNA | compare |
1VQ8_W_9 | 6AZ3_c_8 | 0.72 | 0.85 | 1.01 | 0.09 | Ribosomal protein L30p/L7e | 5S ribosomal RNA | compare |
1VQ8_W_9 | 7O7Y_BF_B7 | 0.74 | 0.85 | 1.15 | 0.18 | Ribosomal protein L30p/L7e | 5S ribosomal RNA | compare |