Residue Ribonucleotide Distance Base Pair Hbond nuc:res Base Stack Type Residue conservation [ASP]A:25 [A]D:58 4.99 16.3 [GLY]A:59 [G]D:17 5.0 [U]D:39 89.31 [GLY]A:59 [C]D:18 3.44 [G]D:38 89.31 [PRO]A:60 [C]D:18 3.48 [G]D:38 71.18 [THR]A:61 [G]D:17 4.87 [U]D:39 91.65 [THR]A:61 [U]D:40 3.4 [C]D:16 91.65 [THR]A:61 [G]E:69 4.06 91.65 [HIS]A:63 [U]D:40 3.5 [C]D:16 base:SC 76.02 [HIS]A:63 [C]D:41 3.27 [G]E:67 base/AA stacks 76.02 [HIS]A:63 [G]E:67 4.42 [C]D:41 76.02 [HIS]A:63 [G]E:69 4.18 76.02 [HIS]A:63 [C]E:70 3.06 [G]D:15 76.02 [GLU]A:64 [G]D:17 2.71 [U]D:39 base:SC, base:SC 70.99 [GLU]A:64 [C]D:18 4.49 [G]D:38 70.99 [GLU]A:64 [U]D:39 2.96 [G]D:17 sugar:SC 70.99 [GLU]A:64 [U]D:40 3.37 [C]D:16 base/AA stacks 70.99 [VAL]A:66 [C]D:41 3.27 [G]E:67 83.05 [ALA]A:67 [U]D:40 3.82 [C]D:16 50.76 [ALA]A:67 [C]D:41 4.56 [G]E:67 50.76 [LYS]A:70 [C]D:41 3.99 [G]E:67 84.51 [LYS]A:70 [G]D:42 2.55 [C]E:66 84.51 [GLU]A:76 [G]D:42 4.45 [C]E:66 65.55 [LYS]A:77 [G]D:42 3.62 [C]E:66 83.5 [LYS]A:77 [C]D:43 2.99 [G]E:65 83.5 [ALA]A:78 [C]D:41 2.75 [G]E:67 sugar:BB 75.33 [ALA]A:78 [G]D:42 2.96 [C]E:66 75.33 [GLY]A:79 [C]D:41 3.32 [G]E:67 95.1 [GLY]A:79 [G]D:42 3.47 [C]E:66 95.1 [HIS]A:80 [C]D:41 3.26 [G]E:67 sugar:BB base/AA stacks 97.3 [HIS]A:80 [G]D:42 4.5 [C]E:66 97.3 [HIS]A:80 [G]E:67 3.13 [C]D:41 base:BB 97.3 [GLY]A:81 [G]E:67 3.32 [C]D:41 59.89 [GLY]A:82 [G]E:67 3.32 [C]D:41 97.17 [GLY]A:82 [FHU]E:68 3.18 97.17 [THR]A:83 [G]E:67 3.43 [C]D:41 sugar:BB 98.55 [THR]A:83 [FHU]E:68 3.11 98.55 [THR]A:83 [G]E:69 3.99 98.55 [THR]A:83 [C]E:70 4.38 [G]D:15 98.55 [LEU]A:84 [FHU]E:68 3.96 96.56 [LEU]A:84 [G]E:69 4.89 96.56 [ASP]A:85 [FHU]E:68 2.37 base:BB, sugar:SC base/AA stacks 98.28 [ASP]A:85 [G]E:69 3.23 98.28 [PRO]A:86 [G]D:17 4.39 [U]D:39 96.85 [PRO]A:86 [G]E:69 3.6 96.85 [VAL]A:88 [FHU]E:68 4.01 94.36 [THR]A:100 [G]D:42 3.39 [C]E:66 91.97 [THR]A:100 [C]D:43 3.84 [G]E:65 91.97 [ARG]A:101 [C]D:5 2.89 [G]D:50 84.99 [ARG]A:101 [A]D:6 3.7 [U]D:49 84.99 [ARG]A:101 [C]D:43 3.8 [G]E:65 84.99 [ARG]A:101 [U]D:44 3.86 [A]E:64 84.99 [VAL]A:103 [G]D:42 3.83 [C]E:66 54.23 [VAL]A:103 [C]D:43 3.59 [G]E:65 54.23 [GLN]A:104 [C]D:43 3.25 [G]E:65 57.78 [GLN]A:104 [U]D:44 3.01 [A]E:64 57.78 [LEU]A:107 [G]D:42 3.82 [C]E:66 26.17 [LEU]A:107 [C]D:43 4.16 [G]E:65 26.17 [LEU]A:107 [C]E:66 4.99 [G]D:42 26.17 [LEU]A:107 [G]E:67 3.54 [C]D:41 26.17 [LEU]A:107 [FHU]E:68 4.9 26.17 [LYS]A:111 [G]E:67 4.49 [C]D:41 97.83 [LYS]A:111 [FHU]E:68 3.27 97.83 [TYR]A:113 [FHU]E:68 3.16 98.52 [LEU]A:145 [C]E:70 4.74 [G]D:15 54.91 [LEU]A:145 [G]E:71 4.84 [C]D:14 54.91 [ARG]A:146 [G]D:15 4.87 [C]E:70 68.6 [ARG]A:146 [C]D:16 3.62 [U]D:40 68.6 [ARG]A:146 [G]E:69 3.35 base/AA stacks 68.6 [ARG]A:146 [C]E:70 3.27 [G]D:15 68.6 [ARG]A:146 [G]E:71 4.91 [C]D:14 68.6 [SER]A:147 [G]E:69 3.89 98.79 [SER]A:147 [C]E:70 3.81 [G]D:15 98.79 [SER]A:147 [G]E:71 3.7 [C]D:14 98.79 [ALA]A:148 [C]E:66 4.35 [G]D:42 95.87 [ALA]A:148 [G]E:67 4.02 [C]D:41 95.87 [ALA]A:148 [G]E:69 3.23 95.87 [ALA]A:148 [C]E:70 3.36 [G]D:15 95.87 [VAL]A:149 [C]E:66 3.76 [G]D:42 84.85 [VAL]A:149 [G]E:67 3.43 [C]D:41 84.85 [VAL]A:149 [G]E:69 4.69 84.85 [LYS]A:150 [A]E:64 4.85 [U]D:44 73.01 [LYS]A:150 [G]E:65 2.76 [C]D:43 73.01 [LYS]A:150 [C]E:66 3.05 [G]D:42 73.01 [ARG]A:152 [G]E:65 3.84 [C]D:43 47.79 [ARG]A:152 [C]E:66 4.91 [G]D:42 47.79 [ARG]A:154 [C]E:66 4.07 [G]D:42 94.36 [ARG]A:154 [G]E:67 2.9 [C]D:41 94.36 [ARG]A:156 [C]E:66 4.45 [G]D:42 90.11 [ARG]A:156 [G]E:67 2.7 [C]D:41 90.11 [GLU]A:178 [FHU]E:68 4.6 89.87 [ALA]A:179 [G]E:67 3.69 [C]D:41 67.74 [ALA]A:179 [FHU]E:68 3.37 67.74 [GLY]A:180 [G]E:67 3.31 [C]D:41 98.04 [GLY]A:180 [FHU]E:68 2.73 98.04 [THR]A:181 [FHU]E:68 3.46 base:BB 96.77 [TYR]A:182 [FHU]E:68 3.5 97.89 [TYR]A:182 [G]E:69 2.69 97.89 [ILE]A:183 [FHU]E:68 2.74 base:BB 87.91 [ARG]A:184 [FHU]E:68 3.36 base:BB 98.97 [MET]A:200 [FHU]E:68 3.39 82.22 [LEU]A:203 [FHU]E:68 3.69 98.87 [ARG]A:205 [G]E:67 4.71 [C]D:41 98.97 [ARG]A:205 [FHU]E:68 2.43 98.97 [LYS]A:259 [A]D:57 3.69 57.94 [LYS]A:259 [A]D:58 2.57 57.94 [SER]A:261 [A]D:57 2.61 sugar:SC 56.38 [SER]A:261 [A]D:58 3.06 56.38 [ALA]A:262 [A]D:57 3.6 49.06 [ALA]A:265 [A]D:55 3.4 49.84 [ALA]A:265 [A]D:57 3.58 49.84 [VAL]A:266 [A]D:57 4.68 63.48 [THR]A:267 [C]D:4 3.83 [G]D:51 49.95 [HIS]A:268 [G]D:3 2.78 [C]D:52 base:BB 68.02 [HIS]A:268 [C]D:4 4.51 [G]D:51 68.02 [HIS]A:268 [C]D:52 3.97 [G]D:3 sugar:SC 68.02 [HIS]A:268 [C]D:53 3.5 [G]D:2 sugar:SC 68.02 [HIS]A:268 [A]D:55 3.04 68.02 [GLY]A:269 [G]D:3 2.74 [C]D:52 sugar:BB 98.95 [GLY]A:269 [C]D:4 3.51 [G]D:51 98.95 [GLY]A:269 [A]D:55 3.55 98.95 [ALA]A:270 [G]D:3 4.91 [C]D:52 56.58 [ALA]A:270 [A]D:55 3.48 56.58 [ALA]A:270 [A]D:57 3.57 56.58 [ASP]A:271 [G]D:3 4.65 [C]D:52 45.98 [ASP]A:271 [A]D:57 3.04 base:BB 45.98 [LEU]A:272 [A]D:57 3.96 62.74 [ALA]A:273 [C]D:56 3.5 0.74 [ALA]A:273 [A]D:57 2.99 base:BB 0.74 [VAL]A:274 [A]D:57 4.94 24.9 [PRO]A:275 [C]D:56 3.86 38.53 [PRO]A:275 [A]D:57 3.47 38.53 [PRO]A:275 [A]D:58 3.86 38.53 [GLY]A:276 [A]D:57 3.25 38.03 [THR]A:316 [C]D:56 4.84 44.46 [LYS]A:317 [C]D:56 3.25 33.47 [GLY]A:318 [C]D:56 2.94 base:BB, base:BB 58.67 [ILE]A:319 [C]D:56 3.67 1.8 [VAL]A:323 [G]D:3 4.06 [C]D:52 55.66 [VAL]A:323 [C]D:4 3.5 [G]D:51 55.66 [GLU]A:324 [C]D:4 3.66 [G]D:51 39.67 [GLU]A:324 [C]D:5 3.87 [G]D:50 39.67 [LYS]A:325 [C]D:4 4.42 [G]D:51 71.45 [LYS]A:325 [C]D:5 3.23 [G]D:50 71.45 [LYS]A:325 [U]D:44 2.62 [A]E:64 71.45 [LYS]A:325 [C]D:45 3.16 [G]E:63 71.45 [VAL]A:326 [C]D:4 3.66 [G]D:51 89.42 [VAL]A:326 [C]D:5 2.74 [G]D:50 89.42 [ARG]A:330 [G]D:3 4.08 [C]D:52 6.0 [ARG]A:330 [C]D:4 2.76 [G]D:51 base:SC 6.0 [ARG]A:330 [C]D:5 3.87 [G]D:50 6.0 [ARG]A:330 [G]D:51 3.65 [C]D:4 6.0 [ARG]A:330 [C]D:52 2.82 [G]D:3 base:SC, sugar:SC 6.0 [ARG]A:330 [C]D:53 4.49 [G]D:2 6.0 [LYS]A:335 [C]D:52 4.77 [G]D:3 46.32 [LYS]A:335 [C]D:53 3.25 [G]D:2 46.32 [LEU]A:336 [A]D:58 3.53 13.43 [TRP]A:337 [C]D:53 3.53 [G]D:2 32.71 [TRP]A:337 [C]D:54 2.82 [G]D:1 32.71 [TRP]A:337 [A]D:55 3.28 32.71 [TRP]A:337 [A]D:57 4.88 32.71 [TRP]A:337 [A]D:58 3.2 32.71