Residue Ribonucleotide Distance Base Pair Hbond nuc:res Base Stack Type Residue conservation [ALA]La:2 [A]23:2451 4.06 [G]23:2061 92.75 [ALA]La:2 [C]23:2452 4.32 [PSU]23:2504 92.75 [ALA]La:2 [G]23:2494 3.67 [PSU]23:2457 92.75 [ALA]La:2 [C]Dt:2979 4.9 [OMG]23:2251 92.75 [ALA]La:2 [A]Dt:2980 3.42 base:BB, base:BB 92.75 [HIS]La:3 [U]23:2493 3.29 [A]23:2459 81.51 [HIS]La:3 [G]23:2494 2.93 [PSU]23:2457 81.51 [LYS]La:4 [OMG]23:2251 3.38 [C]Dt:2979 83.28 [LYS]La:4 [G]23:2252 2.71 [C]Dt:2978 base:SC, base:SC 83.28 [LYS]La:4 [G]23:2253 3.69 83.28 [LYS]La:4 [G]23:2495 4.82 [C]23:2456 83.28 [LYS]La:4 [C]Dt:2978 4.09 [G]23:2252 83.28 [LYS]La:4 [C]Dt:2979 4.82 [OMG]23:2251 83.28 [LYS]La:4 [A]Dt:2980 4.82 83.28 [LYS]La:5 [G]Dt:2905 3.76 [C]Dt:2976 94.19 [GLY]La:7 [G]Dt:2905 4.46 [C]Dt:2976 47.28 [GLY]La:7 [C]Dt:2906 4.05 [G]Dt:2975 47.28 [GLY]La:8 [G]23:2255 3.08 [C]23:2275 base:BB 74.89 [GLY]La:8 [C]23:2275 4.26 [G]23:2255 74.89 [GLY]La:8 [C]Dt:2906 3.98 [G]Dt:2975 74.89 [GLY]La:8 [C]Dt:2907 4.96 [G]Dt:2974 74.89 [SER]La:9 [G]23:2255 3.75 [C]23:2275 76.94 [SER]La:9 [G]23:2256 3.87 [C]23:2248 76.94 [SER]La:9 [C]23:2275 4.82 [G]23:2255 76.94 [SER]La:9 [C]Dt:2907 4.83 [G]Dt:2974 76.94 [THR]La:10 [G]23:2256 3.74 [C]23:2248 sugar:BB 65.91 [THR]La:10 [C]23:2275 4.05 [G]23:2255 65.91 [THR]La:10 [G]23:2276 4.62 [C]23:2264 65.91 [THR]La:10 [G]23:2277 2.58 [C]23:2263 65.91 [ARG]La:11 [G]23:2279 3.43 [C]23:2261 62.7 [ARG]La:11 [G]Dt:2967 4.11 [U]Dt:2955 62.7 [ARG]La:11 [A]Dt:2968 4.48 [U]Dt:2954 62.7 [ASN]La:12 [G]23:2276 4.64 [C]23:2264 84.41 [ASN]La:12 [G]23:2277 3.03 [C]23:2263 base:BB base/AA stacks 84.41 [ASN]La:12 [A]23:2278 2.83 [U]23:2262 84.41 [ASN]La:12 [G]23:2279 4.27 [C]23:2261 84.41 [ARG]La:14 [C]23:2258 4.61 [G]23:2246 71.64 [ARG]La:14 [C]23:2260 4.19 [G]23:2280 71.64 [ARG]La:14 [C]23:2261 3.9 [G]23:2279 71.64 [ARG]La:14 [U]23:2262 3.82 [A]23:2278 71.64 [ARG]La:14 [C]23:2263 3.81 [G]23:2277 base:BB 71.64 [ARG]La:14 [G]23:2277 3.59 [C]23:2263 71.64 [ARG]La:14 [A]23:2278 3.16 [U]23:2262 base:BB 71.64 [ARG]La:14 [G]23:2279 2.73 [C]23:2261 base:SC, base:SC 71.64 [ARG]La:14 [G]23:2280 3.26 [C]23:2260 71.64 [ASP]La:15 [C]23:2261 3.74 [G]23:2279 76.95 [ASP]La:15 [U]23:2262 3.49 [A]23:2278 76.95 [ASP]La:15 [C]23:2263 3.05 [G]23:2277 76.95 [ASP]La:15 [C]23:2264 2.94 [G]23:2276 base:SC 76.95 [ASP]La:15 [U]23:2265 3.93 [A]23:2274 76.95 [ASP]La:15 [G]23:2276 4.75 [C]23:2264 76.95 [ASP]La:15 [A]23:2278 4.79 [U]23:2262 76.95 [ASP]La:15 [G]23:2279 4.94 [C]23:2261 76.95 [SER]La:16 [C]23:2261 3.49 [G]23:2279 87.86 [SER]La:16 [U]23:2262 2.59 [A]23:2278 87.86 [SER]La:16 [C]23:2263 4.5 [G]23:2277 87.86 [GLU]La:17 [C]23:2260 4.23 [G]23:2280 40.65 [GLU]La:17 [C]23:2261 2.98 [G]23:2279 40.65 [GLU]La:17 [U]23:2262 3.43 [A]23:2278 40.65 [GLU]La:17 [U]23:2272 4.79 [A]23:2267 40.65 [ALA]La:18 [G]23:2271 3.19 70.8 [ALA]La:18 [U]23:2272 3.25 [A]23:2267 70.8 [LYS]La:19 [C]23:2261 2.73 [G]23:2279 82.57 [LYS]La:19 [U]23:2262 2.87 [A]23:2278 82.57 [LYS]La:19 [G]23:2271 3.67 82.57 [LYS]La:19 [U]23:2387 3.92 [A]23:2328 82.57 [LYS]La:19 [A]23:2388 4.6 82.57 [ARG]La:20 [A]23:2270 3.39 72.3 [ARG]La:20 [G]23:2271 2.9 72.3 [ARG]La:20 [U]23:2272 4.8 [A]23:2267 72.3 [ARG]La:20 [G]23:2355 4.85 [C]23:2362 72.3 [ARG]La:20 [U]23:2356 3.15 [G]23:2361 72.3 [ARG]La:20 [G]23:2357 3.15 [G]23:2360 72.3 [LEU]La:21 [A]23:2270 3.29 83.66 [LEU]La:21 [G]23:2271 4.28 83.66 [GLY]La:22 [G]23:2269 4.96 95.93 [VAL]La:23 [G]23:857 3.57 [A]23:920 69.47 [VAL]La:23 [G]23:2269 4.25 69.47 [LYS]La:24 [C]23:922 4.83 [G]23:855 97.85 [LYS]La:24 [G]23:2355 3.61 [C]23:2362 97.85 [LYS]La:24 [U]23:2356 3.56 [G]23:2361 97.85 [ARG]La:25 [C]23:2354 3.83 [G]23:2363 29.49 [ARG]La:25 [G]23:2355 3.35 [C]23:2362 29.49 [PHE]La:26 [G]23:855 4.06 [C]23:922 12.42 [PHE]La:26 [G]23:856 3.39 [C]23:921 12.42 [PHE]La:26 [G]23:857 3.2 [A]23:920 12.42 [PHE]La:26 [C]23:922 3.64 [G]23:855 12.42 [PHE]La:26 [G]23:2269 4.46 12.42 [GLY]La:27 [G]23:855 3.09 [C]23:922 base:BB 54.95 [GLY]La:27 [G]23:856 2.82 [C]23:921 sugar:BB 54.95 [GLY]La:27 [G]23:923 4.78 [C]23:854 54.95 [GLY]La:28 [G]23:855 4.05 [C]23:922 84.64 [GLY]La:28 [G]23:923 3.79 [C]23:854 84.64 [GLU]La:29 [C]23:922 2.44 [G]23:855 sugar:SC 72.97 [GLU]La:29 [G]23:923 3.43 [C]23:854 72.97 [SER]La:30 [G]23:923 4.69 [C]23:854 1.36 [LEU]La:32 [G]23:2353 3.33 [C]23:2364 39.0 [LEU]La:32 [C]23:2354 3.88 [G]23:2363 39.0 [ALA]La:33 [A]23:2352 3.2 [G]23:2365 54.97 [ALA]La:33 [G]23:2353 3.03 [C]23:2364 54.97 [GLY]La:34 [A]23:2352 3.31 [G]23:2365 94.52 [GLY]La:34 [G]23:2353 2.49 [C]23:2364 base:BB 94.52 [GLY]La:34 [C]23:2354 4.01 [G]23:2363 94.52 [GLY]La:34 [C]23:2364 4.91 [G]23:2353 94.52 [GLY]La:34 [G]23:2365 4.85 [A]23:2352 94.52 [SER]La:35 [G]23:2353 3.14 [C]23:2364 sugar:SC 58.78 [SER]La:35 [C]23:2354 3.56 [G]23:2363 58.78 [ILE]La:36 [G]23:2353 4.72 [C]23:2364 93.72 [ILE]La:36 [C]23:2354 2.69 [G]23:2363 sugar:BB 93.72 [ILE]La:36 [G]23:2355 3.57 [C]23:2362 93.72 [ILE]La:36 [G]23:2363 3.47 [C]23:2354 93.72 [ILE]La:36 [C]23:2364 4.08 [G]23:2353 93.72 [ARG]La:39 [G]23:2355 3.26 [C]23:2362 sugar:SC 91.75 [ARG]La:39 [U]23:2356 4.5 [G]23:2361 91.75 [GLN]La:40 [A]23:2386 4.98 [U]23:2329 99.0 [ARG]La:41 [U]23:2262 4.54 [A]23:2278 75.4 [ARG]La:41 [G]23:2330 2.4 [C]23:2385 sugar:BB 75.4 [ARG]La:41 [G]23:2331 3.98 [U]23:2324 75.4 [ARG]La:41 [A]23:2386 3.73 [U]23:2329 75.4 [ARG]La:41 [U]23:2387 3.22 [A]23:2328 sugar:SC 75.4 [GLY]La:42 [G]23:2330 3.62 [C]23:2385 93.4 [GLY]La:42 [G]23:2331 3.65 [U]23:2324 93.4 [GLY]La:42 [A]23:2336 4.65 93.4 [GLY]La:42 [C]23:2385 4.92 [G]23:2330 93.4 [GLY]La:42 [A]23:2386 4.75 [U]23:2329 93.4 [THR]La:43 [G]23:2331 3.09 [U]23:2324 sugar:BB 76.25 [THR]La:43 [C]23:2332 3.75 [G]23:2323 76.25 [THR]La:43 [A]23:2336 2.95 base:SC 76.25 [LYS]La:44 [G]23:2330 3.4 [C]23:2385 54.37 [LYS]La:44 [G]23:2331 3.92 [U]23:2324 54.37 [PHE]La:45 [G]23:857 3.63 [A]23:920 37.9 [PHE]La:45 [G]23:858 4.51 [U]23:919 37.9 [HIS]La:46 [G]23:2331 4.59 [U]23:2324 37.67 [HIS]La:46 [C]23:2332 3.01 [G]23:2323 37.67 [HIS]La:46 [A]23:2336 4.71 37.67 [CYS]La:53 [G]23:2365 4.82 [A]23:2352 50.55 [GLY]La:54 [C]23:2364 3.65 [G]23:2353 81.89 [GLY]La:54 [G]23:2365 3.32 [A]23:2352 81.89 [ARG]La:55 [G]23:2363 4.77 [C]23:2354 56.01 [ARG]La:55 [C]23:2364 2.76 [G]23:2353 56.01 [ARG]La:55 [G]23:2365 2.83 [A]23:2352 56.01 [ARG]La:55 [U]23:2384 3.24 [A]23:2284 56.01 [ARG]La:55 [C]23:2385 4.88 [G]23:2330 56.01 [ARG]La:55 [A]23:2386 3.43 [U]23:2329 56.01 [ARG]La:55 [U]23:2387 2.84 [A]23:2328 56.01 [ASP]La:56 [G]23:2363 4.25 [C]23:2354 93.4 [ASP]La:56 [C]23:2364 3.26 [G]23:2353 93.4 [ASP]La:56 [A]23:2386 3.67 [U]23:2329 93.4 [HIS]La:57 [G]23:2330 4.53 [C]23:2385 56.6 [HIS]La:57 [A]23:2336 3.74 56.6 [HIS]La:57 [C]23:2385 3.45 [G]23:2330 sugar:SC 56.6 [HIS]La:57 [A]23:2386 3.29 [U]23:2329 sugar:SC 56.6 [THR]La:58 [C]23:2364 3.55 [G]23:2353 92.98 [PHE]La:60 [C]23:2364 4.4 [G]23:2353 49.03 [PHE]La:60 [G]23:2365 3.36 [A]23:2352 49.03 [PHE]La:60 [A]23:2366 3.76 [G]23:2351 49.03 [LYS]La:62 [A]23:2366 3.98 [G]23:2351 40.49 [LYS]La:68 [G]23:856 4.84 [C]23:921 22.44 [PHE]La:69 [G]23:856 3.66 [C]23:921 67.21 [PHE]La:69 [G]23:857 3.52 [A]23:920 67.21 [LYS]La:75 [A]23:2333 3.96 7.87 [LYS]La:75 [U]23:2334 3.92 7.87 [ARG]La:77 [C]23:2332 3.06 [G]23:2323 55.11 [ARG]La:77 [A]23:2333 2.55 55.11 [LYS]La:78 [G]23:858 3.63 [U]23:919 54.42