Residue	Ribonucleotide	Distance	Base Pair	Hbond nuc:res	Base Stack Type	Residue conservation
[ALA]A:2	[A]D:35	3.18				32.89
[PRO]A:4	[A]D:35	3.97				20.79
[THR]A:6	[A]D:35	4.11				17.73
[TYR]A:13	[A]D:35	3.15			base/AA stacks	82.61
[ASN]A:15	[A]D:35	3.37				54.23
[SER]A:19	[C]D:24	4.48				39.02
[LYS]A:20	[C]D:24	3.31				61.18
[LYS]A:22	[U]D:25	3.08		base:SC		42.43
[LYS]A:23	[A]D:22	3.17	[U]D:40			43.17
[LYS]A:23	[U]D:23	4.77				43.17
[ARG]A:47	[A]D:22	3.35	[U]D:40		base/AA stacks	50.31
[ARG]A:47	[U]D:23	2.78		sugar:SC	base/AA stacks	50.31
[ARG]A:47	[G]D:26	2.82	[C]D:39	base:SC,  base:SC		50.31
[ARG]A:47	[C]D:39	4.65	[G]D:26			50.31
[THR]A:48	[U]D:23	3.34				72.09
[THR]A:48	[G]D:36	4.53	[C]D:29			72.09
[ARG]A:49	[U]D:23	3.4			base/AA stacks	36.59
[ARG]A:49	[A]D:27	3.31	[U]D:38		base/AA stacks	36.59
[ARG]A:49	[G]D:28	2.86	[C]D:37	base:SC		36.59
[ARG]A:49	[C]D:29	3.62	[G]D:36			36.59
[ARG]A:49	[G]D:36	4.11	[C]D:29			36.59
[ARG]A:49	[C]D:37	3.8	[G]D:28			36.59
[THR]A:50	[G]D:34	4.52	[C]D:30			41.33
[PRO]A:51	[C]D:24	3.48				47.46
[ARG]A:52	[C]D:29	4.62	[G]D:36			85.42
[ARG]A:52	[G]D:34	3.39	[C]D:30		base/AA stacks	85.42
[ARG]A:52	[G]D:36	2.95	[C]D:29	base:SC,  base:SC		85.42
[GLN]A:54	[G]D:34	2.69	[C]D:30	sugar:SC		90.68
[GLN]A:54	[A]D:35	3.3				90.68
[GLN]A:54	[G]D:36	4.39	[C]D:29			90.68
[PHE]A:56	[A]D:35	3.69				82.28
[GLN]A:85	[A]D:35	3.04		base:SC		46.95
[TYR]A:86	[A]D:35	3.04		base:BB		57.18
[ALA]A:87	[A]D:35	3.41				93.22
[LYS]A:88	[A]D:35	2.79		base:BB		64.89
[THR]A:89	[A]D:35	4.96				29.64