Residue	Ribonucleotide	Distance	Base Pair	Hbond nuc:res	Base Stack Type	Residue conservation
[TYR]A:135	[G]B:10	4.83				58.16
[SER]A:138	[G]B:10	3.03		base:SC		94.5
[HIS]A:139	[G]B:10	3.19			base/AA stacks	86.79
[GLN]A:142	[G]B:10	2.77		base:SC,  base:SC		87.11
[ARG]A:171	[G]B:10	2.59				69.99
[SER]A:172	[G]B:10	3.78				88.54
[SER]A:174	[G]B:9	2.97		base:SC		99.0
[HIS]A:175	[G]B:9	3.32			base/AA stacks	93.51
[HIS]A:175	[G]B:10	3.34			base/AA stacks	93.51
[GLU]A:178	[G]B:9	2.66		base:SC,  base:SC		98.08
[TYR]A:220	[G]B:9	3.59				74.34
[TYR]A:220	[G]B:10	2.47				74.34
[HIS]A:223	[C]B:8	3.06		base:SC		98.59
[HIS]A:223	[G]B:9	3.23			base/AA stacks	98.59
[VAL]A:224	[G]B:9	4.99				98.25
[ARG]A:226	[C]B:8	2.91		base:SC,  base:SC		97.61
[TYR]A:243	[C]B:8	3.18		base:BB		81.88
[GLY]A:244	[A]B:7	3.2		base:BB		33.68
[GLY]A:244	[C]B:8	3.37				33.68
[ALA]A:245	[C]B:8	4.01				57.1
[LYS]A:246	[U]B:4	3.51		sugar:SC		87.19
[LYS]A:246	[U]B:5	4.8				87.19
[LYS]A:246	[G]B:6	3.2				87.19
[SER]A:247	[U]B:3	4.25				59.13
[SER]A:248	[U]B:3	3.38				79.63
[LEU]A:251	[U]B:3	3.8				84.89
[LEU]A:251	[U]B:4	3.67				84.89
[ARG]A:254	[U]B:4	3.1				89.34
[GLN]A:300	[A]B:7	2.53		sugar:SC,  sugar:SC		68.92
[GLN]A:300	[C]B:8	2.91		sugar:SC		68.92
[TYR]A:301	[C]B:8	3.6				37.98
[TYR]A:301	[G]B:9	4.96				37.98
[SER]A:303	[A]B:7	4.69				95.45
[LEU]A:304	[A]B:7	3.39				70.85
[LEU]A:304	[C]B:8	3.53				70.85
[GLN]A:307	[A]B:7	3.02		base:SC,  base:SC		96.21
[ASN]A:357	[G]B:6	2.64		sugar:SC		58.27
[ASN]A:357	[A]B:7	3.35		sugar:SC		58.27
[SER]A:358	[A]B:7	4.58				83.97
[SER]A:360	[G]B:6	2.97		base:SC		98.1
[HIS]A:361	[G]B:6	3.22			base/AA stacks	91.42
[HIS]A:361	[A]B:7	3.35			base/AA stacks	91.42
[GLU]A:364	[G]B:6	2.71		base:SC,  base:SC		96.01
[ARG]A:394	[U]B:5	3.89				47.51
[ARG]A:394	[G]B:6	3.3				47.51
[CYS]A:395	[G]B:6	3.49				45.82
[ASN]A:397	[U]B:5	2.86		base:SC,  base:SC		92.73
[PHE]A:398	[U]B:4	3.57				90.3
[PHE]A:398	[U]B:5	3.34			base/AA stacks	90.3
[PHE]A:398	[G]B:6	3.3			base/AA stacks	90.3
[GLN]A:401	[U]B:4	2.72		base:SC,  base:SC		96.59
[GLN]A:401	[U]B:5	3.08		base:SC		96.59
[GLY]A:431	[U]B:5	3.38		base:BB		85.29
[LYS]A:432	[U]B:5	3.31				72.38
[SER]A:433	[U]B:5	3.53				58.0
[GLY]A:434	[U]B:4	3.71				96.72
[GLY]A:434	[U]B:5	2.74		base:BB		96.72
[VAL]A:435	[U]B:5	3.82				98.71
[LYS]A:497	[A]B:2	3.73				73.74
[HIS]A:499	[U]B:5	4.21				76.67
[VAL]A:500	[A]B:2	4.04				76.18
[VAL]A:500	[U]B:3	3.46				76.18
[VAL]A:500	[U]B:4	4.07				76.18
[MET]A:501	[U]B:4	3.32				69.04
[CYS]A:503	[A]B:2	4.66				89.74
[LEU]A:504	[A]B:2	3.46				78.59
[LEU]A:504	[U]B:3	3.84				78.59
[GLN]A:507	[A]B:2	3.03		base:SC,  base:SC		96.74
[SER]A:539	[G]B:1	4.36				46.68
[SER]A:539	[A]B:2	3.08				46.68
[SER]A:540	[A]B:2	2.77		base:SC		43.91
[ALA]A:542	[G]B:1	3.67				66.27
[ARG]A:543	[G]B:1	3.28			base/AA stacks	89.33
[ARG]A:543	[A]B:2	3.11		base:SC	base/AA stacks	89.33
[ARG]A:543	[U]B:3	3.57				89.33
[GLU]A:546	[G]B:1	2.79		base:SC,  base:SC		91.69
[THR]A:576	[G]B:0	3.0				46.29
[THR]A:576	[G]B:1	4.08				46.29
[SER]A:577	[G]B:1	3.03		base:SC		83.05
[GLY]A:578	[G]B:1	4.92				73.88
[SER]A:579	[G]B:0	2.63		base:SC		90.13
[PHE]A:580	[G]B:0	3.37			base/AA stacks	75.03
[PHE]A:580	[G]B:1	3.37			base/AA stacks	75.03
[THR]A:581	[G]B:1	4.07				79.35
[GLU]A:583	[G]B:0	2.91		base:SC,  base:SC		84.15
[LYS]A:584	[G]B:1	3.29		base:SC		83.72
[LYS]A:612	[G]B:0	4.63				69.31
[GLN]A:613	[G]B:0	3.35				81.1
[TYR]A:616	[G]B:0	3.09			base/AA stacks	47.17
[LEU]A:617	[G]B:0	4.92				74.32