Residue	Ribonucleotide	Distance	Base Pair	Hbond nuc:res	Base Stack Type	Residue conservation
[MET]J:1	[A]1:1645	3.41				94.33
[MET]J:1	[G]1:1988	4.76	[C]1:1652			94.33
[MET]J:1	[C]1:1989	4.44	[G]1:1651			94.33
[MET]J:1	[C]1:2712	3.34	[G]1:2675			94.33
[MET]J:1	[U]1:2713	3.89	[G]1:2674			94.33
[ARG]J:2	[G]1:1644	3.49				75.91
[ARG]J:2	[A]1:1645	3.39				75.91
[ARG]J:2	[G]1:2711	4.63	[U]1:2676			75.91
[ARG]J:2	[C]1:2808	4.7	[G]1:2816			75.91
[ARG]J:2	[G]1:2809	2.57				75.91
[ARG]J:2	[A]1:2810	3.77	[A]1:2815			75.91
[ARG]J:2	[G]1:2811	3.17		base:SC,  base:SC		75.91
[HIS]J:3	[G]1:2711	2.78	[U]1:2676	sugar:BB		84.34
[HIS]J:3	[C]1:2712	3.23	[G]1:2675			84.34
[HIS]J:3	[G]1:2809	3.17				84.34
[HIS]J:3	[A]1:2810	3.02	[A]1:2815			84.34
[HIS]J:3	[G]1:2811	4.14				84.34
[ARG]J:4	[A]1:2710	4.66	[G]1:2677			62.46
[ARG]J:4	[G]1:2711	3.83	[U]1:2676			62.46
[ARG]J:4	[G]1:2809	3.05			base/AA stacks	62.46
[ARG]J:4	[A]1:2862	3.69	[U]1:2709			62.46
[ARG]J:4	[C]1:2863	3.56	[G]1:2832			62.46
[ARG]J:4	[C]1:2864	3.18	[G]1:2831			62.46
[ASN]J:5	[C]1:1989	4.93	[G]1:1651			45.11
[ASN]J:5	[A]1:2710	3.53	[G]1:2677			45.11
[ASN]J:5	[G]1:2711	4.06	[U]1:2676			45.11
[ASN]J:5	[G]1:2809	4.4				45.11
[ASN]J:5	[A]1:2862	3.62	[U]1:2709			45.11
[SER]J:6	[A]1:2679	3.85				50.15
[SER]J:6	[G]1:2827	4.77	[C]1:2869			50.15
[SER]J:6	[G]1:2861	3.73	[G]1:2708			50.15
[SER]J:6	[A]1:2862	3.06	[U]1:2709	base:BB		50.15
[GLY]J:7	[A]1:2679	3.51				14.87
[VAL]J:8	[A]1:2679	2.95		base:BB		48.05
[LYS]J:9	[G]1:1644	3.19				70.8
[LYS]J:9	[A]1:1990	3.0	[U]1:1650			70.8
[LYS]J:9	[G]1:1991	2.82	[C]1:1649			70.8
[LYS]J:9	[A]1:2679	4.67				70.8
[LEU]J:10	[G]1:1642	3.84	[C]1:1995			69.23
[LEU]J:10	[A]1:1643	3.98				69.23
[LEU]J:10	[G]1:1644	3.17				69.23
[GLY]J:11	[G]1:1644	3.11		base:BB		62.6
[GLY]J:11	[G]1:1991	4.89	[C]1:1649			62.6
[GLY]J:11	[A]1:1992	3.13	[U]1:1648			62.6
[ARG]J:12	[A]1:1264	3.1	[U]1:1282	sugar:SC		80.23
[ARG]J:12	[A]1:1265	3.81	[U]1:1281			80.23
[ARG]J:12	[A]1:1641	4.43	[U]1:1996			80.23
[ARG]J:12	[G]1:1642	4.9	[C]1:1995			80.23
[ARG]J:12	[G]1:1991	3.51	[C]1:1649			80.23
[ARG]J:12	[A]1:1992	4.4	[U]1:1648			80.23
[THR]J:13	[G]1:1991	4.14	[C]1:1649			23.03
[SER]J:14	[U]1:2678	3.43		sugar:SC		58.99
[SER]J:14	[A]1:2679	3.68				58.99
[SER]J:15	[A]1:1263	4.32				46.67
[SER]J:15	[C]1:2699	3.14	[G]1:2686			46.67
[HIS]J:16	[A]1:1263	3.09			base/AA stacks	57.42
[HIS]J:16	[A]1:1264	2.85	[U]1:1282	sugar:SC		57.42
[ARG]J:17	[A]1:1990	4.87	[U]1:1650			89.55
[ARG]J:17	[G]1:1991	3.34	[C]1:1649			89.55
[ARG]J:17	[A]1:2679	3.37			base/AA stacks	89.55
[LYS]J:18	[C]1:2697	3.86	[G]1:2688			51.05
[LYS]J:18	[G]1:2698	2.98	[U]1:2687			51.05
[ALA]J:19	[A]1:1263	4.03				81.55
[ALA]J:19	[C]1:1283	3.69	[G]1:1636			81.55
[MET]J:20	[A]1:1264	3.96	[U]1:1282			76.85
[MET]J:20	[A]1:1265	3.91	[U]1:1281			76.85
[ASN]J:23	[A]1:1264	4.39	[U]1:1282			79.09
[ASN]J:23	[A]1:1265	4.56	[U]1:1281			79.09
[ASN]J:23	[U]1:1282	2.56	[A]1:1264	base:SC, sugar:SC		79.09
[ASN]J:23	[C]1:1283	3.23	[G]1:1636	sugar:SC		79.09
[LEU]J:24	[A]1:1265	3.6	[U]1:1281			86.81
[LEU]J:24	[C]1:1266	3.96	[G]1:1280			86.81
[ASN]J:26	[U]1:1282	4.64	[A]1:1264			63.04
[SER]J:27	[C]1:1266	3.27	[G]1:1280	sugar:SC		75.82
[HIS]J:31	[C]1:1266	3.83	[G]1:1280			66.58
[HIS]J:31	[G]1:1267	3.47	[C]1:1279			66.58
[LEU]J:33	[G]1:1267	4.25	[C]1:1279			50.86
[ILE]J:34	[C]1:1266	3.57	[G]1:1280			85.17
[ILE]J:34	[G]1:1267	3.45	[C]1:1279			85.17
[LYS]J:35	[C]1:1266	3.49	[G]1:1280			42.54
[LYS]J:35	[G]1:1267	2.62	[C]1:1279			42.54
[THR]J:36	[A]1:1265	4.43	[U]1:1281			99.0
[THR]J:36	[C]1:1266	3.03	[G]1:1280			99.0
[THR]J:37	[C]1:1266	4.45	[G]1:1280			99.0
[THR]J:37	[A]1:1641	3.88	[U]1:1996			99.0
[THR]J:37	[G]1:1642	2.65	[C]1:1995			99.0
[PRO]J:39	[G]1:1642	3.16	[C]1:1995			76.18
[PRO]J:39	[A]1:1643	4.17				76.18
[LYS]J:40	[A]1:1265	4.51	[U]1:1281			87.86
[LYS]J:40	[A]1:1641	4.15	[U]1:1996			87.86
[LYS]J:40	[G]1:1642	2.96	[C]1:1995			87.86
[LYS]J:42	[U]1:2806	2.83	[A]1:2818			87.72
[LYS]J:42	[U]1:2807	2.69	[G]1:2817			87.72
[ARG]J:45	[U]1:2807	3.45	[G]1:2817			62.32
[ARG]J:45	[A]1:2826	4.68	[U]1:2870			62.32
[ARG]J:45	[G]1:2827	3.64	[C]1:2869			62.32
[ARG]J:45	[G]1:2828	4.63	[U]1:2867			62.32
[ARG]J:45	[U]1:2870	4.88	[A]1:2826			62.32
[ARG]J:46	[G]1:2827	3.38	[C]1:2869			55.28
[ARG]J:46	[G]1:2828	3.27	[U]1:2867			55.28
[ARG]J:46	[G]1:2861	3.83	[G]1:2708	sugar:SC		55.28
[ARG]J:46	[A]1:2862	4.26	[U]1:2709			55.28
[GLU]J:49	[G]1:2827	4.26	[C]1:2869			82.56
[GLU]J:49	[G]1:2828	3.07	[U]1:2867			82.56
[GLU]J:49	[U]1:2829	4.09	[A]1:2866			82.56
[PRO]J:50	[G]1:2828	4.32	[U]1:2867			73.26
[PRO]J:50	[U]1:2829	3.49	[A]1:2866			73.26
[THR]J:53	[G]1:2828	4.4	[U]1:2867			82.45
[THR]J:53	[U]1:2829	2.81	[A]1:2866			82.45
[THR]J:53	[U]1:2830	3.75	[A]1:2865			82.45
[VAL]J:60	[U]1:1442	3.66				58.0
[VAL]J:60	[G]1:1443	4.33	[C]1:2693			58.0
[VAL]J:60	[A]1:2840	4.81	[G]1:2855			58.0
[ALA]J:61	[A]1:2839	3.97				53.86
[ALA]J:61	[A]1:2840	4.47	[G]1:2855			53.86
[ASN]J:62	[C]1:2859	4.65	[G]1:2835			64.32
[ARG]J:63	[U]1:1441	3.21		sugar:SC		69.89
[ARG]J:63	[U]1:1442	3.48				69.89
[ARG]J:64	[U]1:1442	2.98		base:SC		87.89
[ARG]J:64	[G]1:1443	3.47	[C]1:2693			87.89
[ARG]J:64	[A]1:2694	3.97				87.89
[ARG]J:64	[G]1:2695	3.38	[C]1:2690			87.89
[ARG]J:64	[A]1:2840	3.1	[G]1:2855			87.89
[ARG]J:64	[G]1:2841	3.21	[U]1:2854			87.89
[LEU]J:65	[C]1:2859	3.87	[G]1:2835			28.07
[PHE]J:67	[U]1:1442	3.56				0.59
[PHE]J:67	[C]1:2690	3.52	[G]1:2695			0.59
[PHE]J:67	[G]1:2695	4.34	[C]1:2690			0.59
[ALA]J:68	[U]1:2696	3.51	[A]1:2689			48.55
[ALA]J:68	[C]1:2697	3.66	[G]1:2688			48.55
[ARG]J:69	[C]1:2681	4.86	[G]1:2706			0.0
[ARG]J:69	[C]1:2859	3.14	[G]1:2835			0.0
[ARG]J:69	[U]1:2860	3.16	[U]1:2834			0.0
[ARG]J:71	[A]1:2689	3.61	[U]1:2696			14.75
[ARG]J:71	[C]1:2690	3.52	[G]1:2695			14.75
[ARG]J:71	[G]1:2695	4.21	[C]1:2690			14.75
[ARG]J:71	[U]1:2696	2.96	[A]1:2689	base:SC		14.75
[ARG]J:71	[C]1:2697	3.52	[G]1:2688		base/AA stacks	14.75
[ALA]J:73	[U]1:1441	3.69				44.47
[ALA]J:74	[U]1:1441	3.43				40.68
[VAL]J:76	[U]1:1442	4.51				70.36
[GLY]J:77	[U]1:1441	3.25				42.35
[LYS]J:78	[U]1:1441	4.97				77.83
[ARG]J:90	[C]1:2869	2.9	[G]1:2827	sugar:SC		85.38
[ARG]J:90	[U]1:2870	4.24	[A]1:2826			85.38
[ASN]J:91	[G]1:2828	3.06	[U]1:2867	base:BB		53.39
[ASN]J:91	[U]1:2829	3.82	[A]1:2866			53.39
[ASN]J:91	[C]1:2869	3.56	[G]1:2827			53.39
[GLY]J:92	[G]1:2827	4.88	[C]1:2869			84.28
[GLY]J:92	[G]1:2828	3.11	[U]1:2867			84.28
[GLY]J:92	[U]1:2829	3.49	[A]1:2866			84.28
[GLY]J:92	[C]1:2869	3.1	[G]1:2827	sugar:BB		84.28
[GLY]J:93	[G]1:2827	3.85	[C]1:2869			93.21
[GLY]J:93	[G]1:2828	3.29	[U]1:2867	sugar:BB		93.21
[GLY]J:93	[C]1:2869	3.14	[G]1:2827	sugar:BB		93.21
[GLY]J:93	[U]1:2870	3.65	[A]1:2826			93.21
[TYR]J:94	[G]1:2828	4.26	[U]1:2867			71.44
[TYR]J:94	[U]1:2829	3.96	[A]1:2866			71.44
[TYR]J:94	[C]1:2869	5.0	[G]1:2827			71.44
[LEU]J:95	[U]1:2870	3.05	[A]1:2826	sugar:BB		83.6
[ARG]J:96	[U]1:2870	3.48	[A]1:2826			85.77
[ARG]J:96	[A]1:2871	2.67	[U]1:2825			85.77
[VAL]J:97	[U]1:2870	4.3	[A]1:2826			72.01
[VAL]J:97	[A]1:2871	3.94	[U]1:2825			72.01
[LEU]J:98	[A]1:2871	4.31	[U]1:2825			39.9
[LYS]J:99	[G]1:2805	3.17	[C]1:2819			69.51
[LYS]J:99	[U]1:2806	2.81	[A]1:2818			69.51
[LYS]J:99	[A]1:2871	4.5	[U]1:2825			69.51
[ARG]J:103	[A]1:1275	3.15				95.11
[ARG]J:103	[G]1:1640	3.78	[C]1:1997			95.11
[ARG]J:103	[A]1:1641	3.52	[U]1:1996			95.11
[ALA]J:104	[A]1:1273	4.25				29.5
[ALA]J:104	[A]1:1274	3.98	[U]1:1270			29.5
[ALA]J:104	[A]1:1275	3.74				29.5
[GLY]J:105	[A]1:1275	2.83		base:BB		84.46
[GLY]J:105	[A]1:1276	3.81	[U]1:1314	base:BB		84.46
[GLY]J:105	[U]1:1314	4.94	[A]1:1276			84.46
[ASP]J:106	[A]1:1275	3.64			base/AA stacks	97.99
[ASP]J:106	[G]1:1640	2.54	[C]1:1997	base:BB,  base:SC, sugar:SC,  sugar:SC		97.99
[ASP]J:106	[A]1:1641	2.98	[U]1:1996			97.99
[ASP]J:106	[C]1:1997	4.91	[G]1:1640			97.99
[ASP]J:106	[A]1:1998	3.78	[U]1:1639			97.99
[ALA]J:107	[C]1:1997	4.92	[G]1:1640			62.27
[ALA]J:107	[A]1:1998	3.37	[U]1:1639			62.27
[ALA]J:108	[A]1:1641	3.2	[U]1:1996			88.75
[PRO]J:109	[A]1:1641	4.35	[U]1:1996			34.82
[VAL]J:116	[U]1:2870	4.1	[A]1:2826			63.0