RNAprotDB

All interfaces > All interologs > Interface groups

All interfaces regrouped by interolog group

Click on the nodes to explore each group of interologs or click on the group names in the table on the right.

group1 ECOD arch-name: a+b two layers; a/b three-layered sandwiches RFAM family: tRNA RFAM clan: tRNA clan Ribosome? no Group size: 2 group2 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 2 group3 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? yes Group size: 2 group4 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? yes Group size: 2 group5 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 2 group6 ECOD arch-name: beta barrels RFAM family: RFAM clan: Ribosome? no Group size: 2 group7 ECOD arch-name: a/b three-layered sandwiches; alpha arrays RFAM family: tRNA RFAM clan: tRNA clan Ribosome? no Group size: 2 group8 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 2 group9 ECOD arch-name: beta barrels; few secondary structure elements RFAM family: RFAM clan: Ribosome? no Group size: 2 group10 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 2 group11 ECOD arch-name: ambiguous RFAM family: RFAM clan: Ribosome? no Group size: 2 group12 ECOD arch-name: alpha arrays; alpha bundles RFAM family: RFAM clan: Ribosome? no Group size: 2 group13 ECOD arch-name: beta barrels RFAM family: RFAM clan: Ribosome? no Group size: 2 group14 ECOD arch-name: beta barrels RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 2 group15 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? no Group size: 2 group16 ECOD arch-name: a+b two layers; alpha arrays RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 2 group17 ECOD arch-name: beta barrels RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 2 group18 ECOD arch-name: few secondary structure elements RFAM family: RFAM clan: Ribosome? no Group size: 2 group19 ECOD arch-name: few secondary structure elements RFAM family: RFAM clan: Ribosome? no Group size: 2 group20 ECOD arch-name: few secondary structure elements RFAM family: RFAM clan: Ribosome? no Group size: 2 group21 ECOD arch-name: extended segments RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 2 group22 ECOD arch-name: a+b complex topology RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 2 group23 ECOD arch-name: a+b two layers RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 2 group24 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? yes Group size: 2 group25 ECOD arch-name: alpha bundles RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 2 group26 ECOD arch-name: few secondary structure elements RFAM family: 5.8S ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 2 group27 ECOD arch-name: extended segments RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 2 group28 ECOD arch-name: beta sandwiches RFAM family: RFAM clan: Ribosome? no Group size: 2 group29 ECOD arch-name: beta complex topology RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? no Group size: 2 group30 ECOD arch-name: RFAM family: RFAM clan: Ribosome? no Group size: 2 group31 ECOD arch-name: extended segments RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 2 group32 ECOD arch-name: beta sandwiches RFAM family: RFAM clan: Ribosome? no Group size: 3 group33 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 3 group34 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 3 group35 ECOD arch-name: alpha arrays RFAM family: Bacterial small signal recognition particle RNA RFAM clan: SRP clan Ribosome? no Group size: 3 group36 ECOD arch-name: alpha arrays RFAM family: Archaeal large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 group37 ECOD arch-name: alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 3 group38 ECOD arch-name: a+b two layers; alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 3 group39 ECOD arch-name: few secondary structure elements RFAM family: RFAM clan: Ribosome? yes Group size: 3 group40 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 3 group41 ECOD arch-name: a+b three layers; alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 3 group42 ECOD arch-name: a+b two layers RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 group43 ECOD arch-name: few secondary structure elements RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 group44 ECOD arch-name: a+b two layers RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 group45 ECOD arch-name: beta barrels RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 3 group46 ECOD arch-name: beta duplicates or obligate multimers RFAM family: RFAM clan: Ribosome? no Group size: 3 group47 ECOD arch-name: alpha complex topology; beta barrels; mixed a+b and a/b RFAM family: RFAM clan: Ribosome? no Group size: 3 group48 ECOD arch-name: beta barrels RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 group49 ECOD arch-name: beta barrels RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 group50 ECOD arch-name: beta barrels RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 group51 ECOD arch-name: beta barrels RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 group52 ECOD arch-name: few secondary structure elements RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 group53 ECOD arch-name: alpha arrays RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 group54 ECOD arch-name: a+b two layers RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 group55 ECOD arch-name: few secondary structure elements RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 4 group56 ECOD arch-name: beta barrels RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 4 group57 ECOD arch-name: a+b two layers RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 4 group58 ECOD arch-name: a/b three-layered sandwiches RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 4 group59 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 4 group60 ECOD arch-name: alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 4 group61 ECOD arch-name: beta barrels RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 4 group62 ECOD arch-name: beta barrels RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 4 group63 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 4 group64 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 4 group65 ECOD arch-name: a+b complex topology RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 4 group66 ECOD arch-name: alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 4 group67 ECOD arch-name: a+b three layers RFAM family: RFAM clan: Ribosome? no Group size: 4 group68 ECOD arch-name: few secondary structure elements RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 4 group69 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 5 group70 ECOD arch-name: few secondary structure elements RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 group71 ECOD arch-name: a/b three-layered sandwiches RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 group72 ECOD arch-name: beta barrels RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 group73 ECOD arch-name: few secondary structure elements RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 5 group74 ECOD arch-name: a/b three-layered sandwiches RFAM family: RFAM clan: Ribosome? no Group size: 5 group75 ECOD arch-name: alpha bundles RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 5 group76 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 5 group77 ECOD arch-name: a+b two layers RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 group78 ECOD arch-name: few secondary structure elements RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 group79 ECOD arch-name: extended segments RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 group80 ECOD arch-name: a+b two layers RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 group81 ECOD arch-name: few secondary structure elements RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 group82 ECOD arch-name: alpha arrays RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 group83 ECOD arch-name: beta barrels RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 group84 ECOD arch-name: a/b three-layered sandwiches RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 5 group85 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 5 group86 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 5 group87 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 5 group88 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 5 group89 ECOD arch-name: a/b three-layered sandwiches; alpha bundles; beta barrels RFAM family: tRNA RFAM clan: tRNA clan Ribosome? no Group size: 6 group90 ECOD arch-name: a+b three layers; a+b two layers; alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 6 group91 ECOD arch-name: beta barrels RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 6 group92 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 group93 ECOD arch-name: beta barrels RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 group94 ECOD arch-name: alpha arrays RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 group95 ECOD arch-name: alpha superhelices RFAM family: RFAM clan: Ribosome? no Group size: 6 group96 ECOD arch-name: alpha arrays RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 group97 ECOD arch-name: a+b complex topology RFAM family: tRNA RFAM clan: tRNA clan Ribosome? yes Group size: 6 group98 ECOD arch-name: few secondary structure elements RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 6 group99 ECOD arch-name: a+b two layers RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 6 group100 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 group101 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 group102 ECOD arch-name: mixed a+b and a/b RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 group103 ECOD arch-name: few secondary structure elements RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 group104 ECOD arch-name: alpha arrays RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 group105 ECOD arch-name: extended segments RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 7 group106 ECOD arch-name: a+b two layers RFAM family: Archaeal large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 7 group107 ECOD arch-name: a+b two layers; beta barrels RFAM family: RFAM clan: Ribosome? no Group size: 7 group108 ECOD arch-name: a+b two layers RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 7 group109 ECOD arch-name: mixed a+b and a/b RFAM family: RFAM clan: Ribosome? no Group size: 7 group110 ECOD arch-name: a+b two layers; a/b three-layered sandwiches RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 7 group111 ECOD arch-name: beta sandwiches RFAM family: RFAM clan: Ribosome? no Group size: 7 group112 ECOD arch-name: alpha arrays RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 7 group113 ECOD arch-name: beta barrels RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 8 group114 ECOD arch-name: alpha bundles RFAM family: tRNA RFAM clan: tRNA clan Ribosome? no Group size: 8 group115 ECOD arch-name: alpha bundles RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 8 group116 ECOD arch-name: a+b two layers RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 8 group117 ECOD arch-name: alpha bundles RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 8 group118 ECOD arch-name: beta barrels RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 8 group119 ECOD arch-name: a+b complex topology RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 8 group120 ECOD arch-name: few secondary structure elements RFAM family: Archaeal large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 9 group121 ECOD arch-name: a+b two layers RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 9 group122 ECOD arch-name: mixed a+b and a/b RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 9 group123 ECOD arch-name: mixed a+b and a/b RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 9 group124 ECOD arch-name: a+b two layers RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 9 group125 ECOD arch-name: a+b complex topology; a+b two layers; alpha complex topology; mixed a+b and a/b RFAM family: RFAM clan: Ribosome? no Group size: 9 group126 ECOD arch-name: a/b three-layered sandwiches RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 10 group127 ECOD arch-name: a/b three-layered sandwiches RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 10 group128 ECOD arch-name: a+b two layers RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 10 group129 ECOD arch-name: beta barrels RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 11 group130 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 11 group131 ECOD arch-name: beta barrels RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 12 group132 ECOD arch-name: beta barrels RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 12 group133 ECOD arch-name: a+b two layers RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 12 group134 ECOD arch-name: a+b two layers RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 12 group135 ECOD arch-name: a/b three-layered sandwiches RFAM family: RFAM clan: Ribosome? no Group size: 12 group136 ECOD arch-name: alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 13 group137 ECOD arch-name: a/b three-layered sandwiches RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 13 group138 ECOD arch-name: a+b complex topology RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 14 group139 ECOD arch-name: a+b three layers RFAM family: RFAM clan: Ribosome? yes Group size: 16 group140 ECOD arch-name: mixed a+b and a/b RFAM family: RFAM clan: Ribosome? no Group size: 19 group141 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 29 g1group1 ECOD arch-name: a+b two layers; a/b three-layered sandwiches RFAM family: tRNA RFAM clan: tRNA clan Ribosome? no Group size: 2 g2group2 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 2 g3group3 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? yes Group size: 2 g4group4 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? yes Group size: 2 g5group5 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 2 g6group6 ECOD arch-name: beta barrels RFAM family: RFAM clan: Ribosome? no Group size: 2 g7group7 ECOD arch-name: a/b three-layered sandwiches; alpha arrays RFAM family: tRNA RFAM clan: tRNA clan Ribosome? no Group size: 2 g8group8 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 2 g9group9 ECOD arch-name: beta barrels; few secondary structure elements RFAM family: RFAM clan: Ribosome? no Group size: 2 g10group10 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 2 g11group11 ECOD arch-name: ambiguous RFAM family: RFAM clan: Ribosome? no Group size: 2 g12group12 ECOD arch-name: alpha arrays; alpha bundles RFAM family: RFAM clan: Ribosome? no Group size: 2 g13group13 ECOD arch-name: beta barrels RFAM family: RFAM clan: Ribosome? no Group size: 2 g14group14 ECOD arch-name: beta barrels RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 2 g15group15 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? no Group size: 2 g16group16 ECOD arch-name: a+b two layers; alpha arrays RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 2 g17group17 ECOD arch-name: beta barrels RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 2 g18group18 ECOD arch-name: few secondary structure elements RFAM family: RFAM clan: Ribosome? no Group size: 2 g19group19 ECOD arch-name: few secondary structure elements RFAM family: RFAM clan: Ribosome? no Group size: 2 g20group20 ECOD arch-name: few secondary structure elements RFAM family: RFAM clan: Ribosome? no Group size: 2 g21group21 ECOD arch-name: extended segments RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 2 g22group22 ECOD arch-name: a+b complex topology RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 2 g23group23 ECOD arch-name: a+b two layers RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 2 g24group24 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? yes Group size: 2 g25group25 ECOD arch-name: alpha bundles RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 2 g26group26 ECOD arch-name: few secondary structure elements RFAM family: 5.8S ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 2 g27group27 ECOD arch-name: extended segments RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 2 g28group28 ECOD arch-name: beta sandwiches RFAM family: RFAM clan: Ribosome? no Group size: 2 g29group29 ECOD arch-name: beta complex topology RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? no Group size: 2 g30group30 ECOD arch-name: RFAM family: RFAM clan: Ribosome? no Group size: 2 g31group31 ECOD arch-name: extended segments RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 2 g32group32 ECOD arch-name: beta sandwiches RFAM family: RFAM clan: Ribosome? no Group size: 3 g33group33 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 3 g34group34 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 3 g35group35 ECOD arch-name: alpha arrays RFAM family: Bacterial small signal recognition particle RNA RFAM clan: SRP clan Ribosome? no Group size: 3 g36group36 ECOD arch-name: alpha arrays RFAM family: Archaeal large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 g37group37 ECOD arch-name: alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 3 g38group38 ECOD arch-name: a+b two layers; alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 3 g39group39 ECOD arch-name: few secondary structure elements RFAM family: RFAM clan: Ribosome? yes Group size: 3 g40group40 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 3 g41group41 ECOD arch-name: a+b three layers; alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 3 g42group42 ECOD arch-name: a+b two layers RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 g43group43 ECOD arch-name: few secondary structure elements RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 g44group44 ECOD arch-name: a+b two layers RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 g45group45 ECOD arch-name: beta barrels RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 3 g46group46 ECOD arch-name: beta duplicates or obligate multimers RFAM family: RFAM clan: Ribosome? no Group size: 3 g47group47 ECOD arch-name: alpha complex topology; beta barrels; mixed a+b and a/b RFAM family: RFAM clan: Ribosome? no Group size: 3 g48group48 ECOD arch-name: beta barrels RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 g49group49 ECOD arch-name: beta barrels RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 g50group50 ECOD arch-name: beta barrels RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 g51group51 ECOD arch-name: beta barrels RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 g52group52 ECOD arch-name: few secondary structure elements RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 g53group53 ECOD arch-name: alpha arrays RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 g54group54 ECOD arch-name: a+b two layers RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 3 g55group55 ECOD arch-name: few secondary structure elements RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 4 g56group56 ECOD arch-name: beta barrels RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 4 g57group57 ECOD arch-name: a+b two layers RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 4 g58group58 ECOD arch-name: a/b three-layered sandwiches RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 4 g59group59 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 4 g60group60 ECOD arch-name: alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 4 g61group61 ECOD arch-name: beta barrels RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 4 g62group62 ECOD arch-name: beta barrels RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 4 g63group63 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 4 g64group64 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 4 g65group65 ECOD arch-name: a+b complex topology RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 4 g66group66 ECOD arch-name: alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 4 g67group67 ECOD arch-name: a+b three layers RFAM family: RFAM clan: Ribosome? no Group size: 4 g68group68 ECOD arch-name: few secondary structure elements RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 4 g69group69 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 5 g70group70 ECOD arch-name: few secondary structure elements RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 g71group71 ECOD arch-name: a/b three-layered sandwiches RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 g72group72 ECOD arch-name: beta barrels RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 g73group73 ECOD arch-name: few secondary structure elements RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 5 g74group74 ECOD arch-name: a/b three-layered sandwiches RFAM family: RFAM clan: Ribosome? no Group size: 5 g75group75 ECOD arch-name: alpha bundles RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 5 g76group76 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 5 g77group77 ECOD arch-name: a+b two layers RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 g78group78 ECOD arch-name: few secondary structure elements RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 g79group79 ECOD arch-name: extended segments RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 g80group80 ECOD arch-name: a+b two layers RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 g81group81 ECOD arch-name: few secondary structure elements RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 g82group82 ECOD arch-name: alpha arrays RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 g83group83 ECOD arch-name: beta barrels RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 5 g84group84 ECOD arch-name: a/b three-layered sandwiches RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 5 g85group85 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 5 g86group86 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 5 g87group87 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 5 g88group88 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 5 g89group89 ECOD arch-name: a/b three-layered sandwiches; alpha bundles; beta barrels RFAM family: tRNA RFAM clan: tRNA clan Ribosome? no Group size: 6 g90group90 ECOD arch-name: a+b three layers; a+b two layers; alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 6 g91group91 ECOD arch-name: beta barrels RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 6 g92group92 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 g93group93 ECOD arch-name: beta barrels RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 g94group94 ECOD arch-name: alpha arrays RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 g95group95 ECOD arch-name: alpha superhelices RFAM family: RFAM clan: Ribosome? no Group size: 6 g96group96 ECOD arch-name: alpha arrays RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 g97group97 ECOD arch-name: a+b complex topology RFAM family: tRNA RFAM clan: tRNA clan Ribosome? yes Group size: 6 g98group98 ECOD arch-name: few secondary structure elements RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 6 g99group99 ECOD arch-name: a+b two layers RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 6 g100group100 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 g101group101 ECOD arch-name: a+b two layers RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 g102group102 ECOD arch-name: mixed a+b and a/b RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 g103group103 ECOD arch-name: few secondary structure elements RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 g104group104 ECOD arch-name: alpha arrays RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 6 g105group105 ECOD arch-name: extended segments RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 7 g106group106 ECOD arch-name: a+b two layers RFAM family: Archaeal large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 7 g107group107 ECOD arch-name: a+b two layers; beta barrels RFAM family: RFAM clan: Ribosome? no Group size: 7 g108group108 ECOD arch-name: a+b two layers RFAM family: Eukaryotic large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 7 g109group109 ECOD arch-name: mixed a+b and a/b RFAM family: RFAM clan: Ribosome? no Group size: 7 g110group110 ECOD arch-name: a+b two layers; a/b three-layered sandwiches RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 7 g111group111 ECOD arch-name: beta sandwiches RFAM family: RFAM clan: Ribosome? no Group size: 7 g112group112 ECOD arch-name: alpha arrays RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 7 g113group113 ECOD arch-name: beta barrels RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 8 g114group114 ECOD arch-name: alpha bundles RFAM family: tRNA RFAM clan: tRNA clan Ribosome? no Group size: 8 g115group115 ECOD arch-name: alpha bundles RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 8 g116group116 ECOD arch-name: a+b two layers RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 8 g117group117 ECOD arch-name: alpha bundles RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 8 g118group118 ECOD arch-name: beta barrels RFAM family: Bacterial small subunit ribosomal RNA RFAM clan: SSU clan Ribosome? yes Group size: 8 g119group119 ECOD arch-name: a+b complex topology RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 8 g120group120 ECOD arch-name: few secondary structure elements RFAM family: Archaeal large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 9 g121group121 ECOD arch-name: a+b two layers RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 9 g122group122 ECOD arch-name: mixed a+b and a/b RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 9 g123group123 ECOD arch-name: mixed a+b and a/b RFAM family: 5S ribosomal RNA RFAM clan: 5S rRNA clan Ribosome? yes Group size: 9 g124group124 ECOD arch-name: a+b two layers RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 9 g125group125 ECOD arch-name: a+b complex topology; a+b two layers; alpha complex topology; mixed a+b and a/b RFAM family: RFAM clan: Ribosome? no Group size: 9 g126group126 ECOD arch-name: a/b three-layered sandwiches RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 10 g127group127 ECOD arch-name: a/b three-layered sandwiches RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 10 g128group128 ECOD arch-name: a+b two layers RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 10 g129group129 ECOD arch-name: beta barrels RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 11 g130group130 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 11 g131group131 ECOD arch-name: beta barrels RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 12 g132group132 ECOD arch-name: beta barrels RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 12 g133group133 ECOD arch-name: a+b two layers RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 12 g134group134 ECOD arch-name: a+b two layers RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 12 g135group135 ECOD arch-name: a/b three-layered sandwiches RFAM family: RFAM clan: Ribosome? no Group size: 12 g136group136 ECOD arch-name: alpha arrays RFAM family: RFAM clan: Ribosome? no Group size: 13 g137group137 ECOD arch-name: a/b three-layered sandwiches RFAM family: RFAM clan: LSU clan Ribosome? yes Group size: 13 g138group138 ECOD arch-name: a+b complex topology RFAM family: Bacterial large subunit ribosomal RNA RFAM clan: LSU clan Ribosome? yes Group size: 14 g139group139 ECOD arch-name: a+b three layers RFAM family: RFAM clan: Ribosome? yes Group size: 16 g140group140 ECOD arch-name: mixed a+b and a/b RFAM family: RFAM clan: Ribosome? no Group size: 19 g141group141 ECOD arch-name: a+b two layers RFAM family: RFAM clan: Ribosome? no Group size: 29 ECOD arch-names: a+b complex topology a+b three layers a+b two layers a/b three-layered sandwiches alpha arrays alpha bundles alpha complex topology alpha superhelices beta barrels beta complex topology beta duplicates or obligate multimers beta sandwiches extended segments few secondary structure elements mixed a+b and a/b ambiguous none

Nodes are interolog groups and their label is their group number.

Node size represents the number of interfaces in each group

Node colour represents the structural family of the protein domain implicated in the interaction with its RNA partner.

Total number of groups: 141

Interolog group ID Group size
 		Representative ECOD label(s)
 		Representative RFAM label(s)
 		Is ribosome?
group1 2 HUP domains & Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain tRNA ✘
group2 2 Microbial ribonucleases ✘
group3 2 Eukaryotic type KH-domain (KH-domain type I) ✔
group4 2 Prokaryotic type KH domain (KH-domain type II) ✔
group5 2 RNA bacteriophage capsid protein ✘
group6 2 ✘
group7 2 P-loop containing nucleoside triphosphate hydrolases & tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA ✘
group8 2 Prokaryotic type KH domain (KH-domain type II) ✘
group9 2 Nucleic acid-binding proteins & CCHC-type 1 zinc finger ✘
group10 2 CRISPR-associated protein Cas7/Csa2-related ✘
group11 2 ✘
group12 2 tri-helical & winged & Helical bundle in ROQ domain ✘
group13 2 SH3 ✘
group14 2 SH3 Bacterial small subunit ribosomal RNA ✔
group15 2 Ribosome binding protein Y (YfiA homologue) Bacterial small subunit ribosomal RNA ✘
group16 2 Ribosomal protein L11, C-terminal domain & Ribosomal protein L11/L12e N-terminal domain Bacterial large subunit ribosomal RNA ✔
group17 2 Ribosomal protein L25-like Bacterial large subunit ribosomal RNA ✔
group18 2 CCCH zinc finger ✘
group19 2 CCCH zinc finger ✘
group20 2 CCCH zinc finger ✘
group21 2 RPL13 Eukaryotic large subunit ribosomal RNA ✔
group22 2 Ribosomal protein L10e 5S ribosomal RNA ✔
group23 2 RplX-like 5S ribosomal RNA ✔
group24 2 Ribosomal protein L22e ✔
group25 2 Ribosomal protein L29 (L29p) Eukaryotic large subunit ribosomal RNA ✔
group26 2 Rubredoxin-related 5.8S ribosomal RNA ✔
group27 2 30S ribosomal protein S21 Bacterial small subunit ribosomal RNA ✔
group28 2 Immunoglobulin/Fibronectin type III/E set domains/PapD-like ✘
group29 2 Obg GTP-binding protein N-terminal domain Bacterial large subunit ribosomal RNA ✘
group30 2 ✘
group31 2 Mitoribosomal protein mL52 Bacterial large subunit ribosomal RNA ✔
group32 3 Trp RNA-binding attenuation protein (TRAP) ✘
group33 3 dsRNA-binding domain-like ✘
group34 3 Eukaryotic type KH-domain (KH-domain type I) ✘
group35 3 Putative DNA-binding domain Bacterial small signal recognition particle RNA ✘
group36 3 Ribosomal protein L11, C-terminal domain Archaeal large subunit ribosomal RNA ✔
group37 3 winged ✘
group38 3 RNase III catalytic domain-like & dsRNA-binding domain-like ✘
group39 3 Nucleolar RNA-binding protein Nop10-like ✔
group40 3 CRISPR transcript (pre-crRNA) processing endoribonuclease-related ✘
group41 3 PAP/OAS1 substrate-binding domain & Nucleotidyltransferase ✘
group42 3 RplX-like Eukaryotic large subunit ribosomal RNA ✔
group43 3 Ribosomal protein L28 Bacterial large subunit ribosomal RNA ✔
group44 3 L9 N-domain-like Bacterial large subunit ribosomal RNA ✔
group45 3 Ribosomal protein L14-related Bacterial small subunit ribosomal RNA ✔
group46 3 6-bladed ✘
group47 3 CRISPR-associated endonuclease Cpf1 first helical domain & CRISPR-associated endonuclease Cpf1 second helical domain & Small protein B (SmpB) & Ribonuclease H-like ✘
group48 3 SH3 Eukaryotic large subunit ribosomal RNA ✔
group49 3 SH3 Eukaryotic large subunit ribosomal RNA ✔
group50 3 SH3 Eukaryotic large subunit ribosomal RNA ✔
Records per page: 10 | 20 | 50 | 100

 
x Clear Filters