Table of all interfaces in this database
Total number of entries: 765
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group141 | 6XH2_A_D | A: Tar-binding protein 6.6, Homo sapiens (genetically engineered) D: Trans-activation response element, Human immunodeficiency virus 1 (synthetic) | P09012 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 1DRZ_A_B | A: Protein (u1 small ribonucleoprotein a), Homo sapiens (genetically engineered) B: RNA (hepatitis delta virus genomic ribozyme), Hepatitis delta virus (genetically engineered) | P09012 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 5WWE_A_B | A: Heterogeneous nuclear ribonucleoproteins a2/b1, Homo sapiens (genetically engineered) B: Synthetic construct (synthetic) | P22626 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 5HO4_A_B | A: Heterogeneous nuclear ribonucleoproteins a2/b1, Homo sapiens (synthetic) B: Synthetic construct (synthetic) | P22626 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 6F4G_B_C | B: U1 small nuclear ribonucleoprotein a, Drosophila melanogaster (genetically engineered) C: U2-sl4, Drosophila melanogaster (synthetic) | P43332 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 4ED5_A_D | A: Elav-like protein 1, Homo sapiens (genetically engineered) D: N/A | Q15717 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 1G2E_A_B | A: Paraneoplastic encephalomyelitis antigen hud, Homo sapiens (genetically engineered) B: N/A | P26378 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 7DCO_p_H | p: Bj4_g0027490.mRNA.1.cds.1, Saccharomyces cerevisiae (natural) H: U2 snRNA, Saccharomyces cerevisiae (natural) | A0A6A5Q318 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 1URN_A_P | A: Protein (u1a), Homo sapiens (genetically engineered) P: N/A | P09012 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 4PR6_A_B | A: U1 small nuclear ribonucleoprotein a, Homo sapiens (genetically engineered) B: Hdv ribozyme self-cleaved | P09012 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 6XH3_A_D | A: Tar binding protein tbp 6.3, Homo sapiens (genetically engineered) D: Trans-activation response element, Human immunodeficiency virus 1 (synthetic) | P09012 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 3MXH_P_R | P: U1 small nuclear ribonucleoprotein a, Homo sapiens (genetically engineered) R: C-di-gmp riboswitch | P09012 | RNA-binding domain, RBD | Cyclic di-GMP-I riboswitch | ✘ |
|
| group141 | 1A9N_B_Q | B: Spliceosomal u2b'', Homo sapiens (genetically engineered) Q: Homo sapiens (genetically engineered) | P08579 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 7DCO_4_G | 4: Hsh49 isoform 1, Saccharomyces cerevisiae (natural) G: Pre-mRNA, Saccharomyces cerevisiae (natural) | RNA-binding domain, RBD | ✘ |
|
||
| group141 | 5WWF_A_B | A: Heterogeneous nuclear ribonucleoproteins a2/b1, Homo sapiens (genetically engineered) B: RNA, Synthetic construct (synthetic) | P22626 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 7DCO_R_G | R: Pre-mRNA-splicing factor cwc2, Saccharomyces cerevisiae (natural) G: Pre-mRNA, Saccharomyces cerevisiae (natural) | A0A6A5Q155 | ✘ |
|
||
| group141 | 7DCO_X_G | X: Sx2_g0027210.mRNA.1.cds.1, Saccharomyces cerevisiae (natural) G: Pre-mRNA, Saccharomyces cerevisiae (natural) | RNA-binding domain, RBD | ✘ |
|
||
| group141 | 6DCL_A_C | A: Heterogeneous nuclear ribonucleoprotein a1, Homo sapiens (genetically engineered) C: Homo sapiens (synthetic) | P09651 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 6SQN_A_X | A: U1 small nuclear ribonucleoprotein a, Homo sapiens (genetically engineered) X: RNA hairpin, Homo sapiens (genetically engineered) | P09012 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 6CMN_A_D | A: Tar-binding protein 6.7, Oryctolagus cuniculus (genetically engineered) D: Trans-activation response RNA element, Human immunodeficiency virus 1 (synthetic) | G1TM83 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 5TF6_A_B | A: U4/u6 snRNA-associated-splicing factor prp24, Saccharomyces cerevisiae (genetically engineered) B: U6 snRNA, Saccharomyces cerevisiae (synthetic) | P49960 | RNA-binding domain, RBD | U6 spliceosomal RNA | ✘ |
|
| group141 | 1M5O_C_B | C: U1 small nuclear ribonucleoprotein a, Homo sapiens (genetically engineered) B: RNA hairpin ribozyme | P09012 | RNA-binding domain, RBD | Hairpin ribozyme 1 from viruses-like metatranscriptomes | ✘ |
|
| group141 | 6DCL_A_D | A: Heterogeneous nuclear ribonucleoprotein a1, Homo sapiens (genetically engineered) D: Homo sapiens (synthetic) | P09651 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 4N0T_A_B | A: U4/u6 snRNA-associated-splicing factor prp24, Saccharomyces cerevisiae (genetically engineered) B: U6 snRNA | P49960 | RNA-binding domain, RBD | U6 spliceosomal RNA | ✘ |
|
| group141 | 4PKD_B_V | B: U1 small nuclear ribonucleoprotein a,u1 small nuclear ribonucleoprotein 70 kda, Sus scrofa (genetically engineered) V: U1 snRNA stem-loops 1 and 2 (55-mer), Homo sapiens (synthetic) | Q06AA4 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 2NZ4_A_P | A: U1 small nuclear ribonucleoprotein a, Homo sapiens (genetically engineered) P: Glms ribozyme | P09012 | RNA-binding domain, RBD | glmS glucosamine-6-phosphate activated ribozyme | ✘ |
|
| group141 | 1SJ3_P_R | P: Small nuclear ribonucleoprotein a, Homo sapiens (genetically engineered) R: Precursor form of the hepatitis delta virus ribozyme, Hepatitis delta virus (genetically engineered) | P09012 | RNA-binding domain, RBD | ✘ |
|
|
| group141 | 5DDP_D_A | D: U1 small nuclear ribonucleoprotein a, Homo sapiens (genetically engineered) A: RNA (61-mer), Synechococcus elongatus (natural) | P09012 | RNA-binding domain, RBD | Glutamine riboswitch | ✘ |
|
| group141 | 6F4H_A_B | A: U1 small nuclear ribonucleoprotein a, Drosophila melanogaster (genetically engineered) B: U1-sl2, Drosophila melanogaster (synthetic) | P43332 | RNA-binding domain, RBD | ✘ |
|
|
| group32 | 1C9S_L_W | L: Trp RNA-binding attenuation protein, Geobacillus stearothermophilus (genetically engineered) W: Single stranded RNA (55-mer) | Q9X6J6 | Trp RNA-binding attenuation protein (TRAP) | ✘ |
|
|
| group32 | 1GTF_L_W | L: Trp RNA-binding attenuation protein (trap), Bacillus stearothermophilus (genetically engineered) W: (gaguu)10gag 53-nucleotide RNA, Synthetic construct (synthetic) | Q9X6J6 | Trp RNA-binding attenuation protein (TRAP) | ✘ |
|
|
| group32 | 1GTN_L_W | L: Trp RNA-binding attenuation protein, Bacillus stearothermophilus (genetically engineered) W: (gagcc)11g 56-nucleotide RNA | Q9X6J6 | Trp RNA-binding attenuation protein (TRAP) | ✘ |
|
|
| group113 | 7RYG_U_B | U: 50s ribosomal protein l25, Acinetobacter baumannii (strain ab0057) (natural) B: 5s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) | B7I7B6 | Ribosomal protein L25-like | 5S ribosomal RNA | ✔ |
|
| group113 | 1DFU_P_M,N | P: Ribosomal protein l25, Escherichia coli (genetically engineered) M: 5s rRNA N: 5s rRNA | P68919 | Ribosomal protein L25-like | ✔ |
|
|
| group113 | 6S0Z_T_B | T: 50s ribosomal protein l25, Staphylococcus aureus (natural) B: 5s ribosomal RNA, Staphylococcus aureus (natural) | A0A133Q8Z9 | Ribosomal protein L25-like | 5S ribosomal RNA | ✔ |
|
| group113 | 6YSI_R_5 | R: 50s ribosomal protein l25, Acinetobacter baumannii atcc 19606 = cip 70.34 = jcm 6841 (natural) 5: 5s ribosomal RNA, Acinetobacter baumannii atcc 19606 = cip 70.34 = jcm 6841 (natural) | D0C9L7 | Ribosomal protein L25-like | 5S ribosomal RNA | ✔ |
|
| group113 | 1FEU_A_B,C | A: 50s ribosomal protein l25, Thermus thermophilus (genetically engineered) B: 19 nt fragment of 5s rRNA C: 21 nt fragment of 5s rRNA | P56930 | Ribosomal protein L25-like & Ribosomal protein TL5/L25 C-terminal domain-related | ✔ |
|
|
| group113 | 4Y4O_1Z_1B | 1Z: 50s ribosomal protein l25, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1B: 5s ribosomal RNA, Thermus thermophilus hb8 (natural) | Q5SHZ1 | Ribosomal protein L25-like | 5S ribosomal RNA | ✔ |
|
| group113 | 4YBB_DW_DB | DW: 50s ribosomal protein l25, Escherichia coli (strain k12) (natural) DB: 5s rRNA, Escherichia coli k-12 (natural) | P68919 | Ribosomal protein L25-like | 5S ribosomal RNA | ✔ |
|
| group113 | 7ASM_T_B | T: 50s ribosomal protein l25, Staphylococcus aureus (natural) B: 5s rRNA, Staphylococcus aureus (genetically engineered) | Q2FJE0 | Ribosomal protein L25-like | 5S ribosomal RNA | ✔ |
|
| group33 | 1YZ9_A_C,D | A: Ribonuclease iii, Aquifex aeolicus (genetically engineered) C: N/A D: N/A | O67082 | RNase III catalytic domain-like & dsRNA-binding domain-like | ✘ |
|
|
| group33 | 1YYK_A_C,D | A: Ribonuclease iii, Aquifex aeolicus (genetically engineered) C: N/A D: N/A | O67082 | dsRNA-binding domain-like | ✘ |
|
|
| group34 | 4WAN_C_D | C: Branchpoint-bridging protein, Saccharomyces cerevisiae (genetically engineered) D: N/A | Q12186 | Eukaryotic type KH-domain (KH-domain type I) | ✘ |
|
|
| group34 | 4WAN_E_F | E: Branchpoint-bridging protein, Saccharomyces cerevisiae (genetically engineered) F: N/A | Q12186 | Eukaryotic type KH-domain (KH-domain type I) | ✘ |
|
|
| group34 | 1EC6_A_D | A: RNA-binding protein nova-2, Homo sapiens (genetically engineered) D: 20-mer RNA hairpin | Q9UNW9 | Eukaryotic type KH-domain (KH-domain type I) | ✘ |
|
|
| group1 | 1F7U_A_B | A: Arginyl-tRNA synthetase, Saccharomyces cerevisiae (genetically engineered) B: tRNA(arg) | Q05506 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & HUP domains & Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain | tRNA | ✘ |
|
| group1 | 2ZUE_A_B | A: Arginyl-tRNA synthetase, Pyrococcus horikoshii (genetically engineered) B: tRNA-arg, Pyrococcus horikoshii (synthetic) | O59147 | HUP domains & Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain | tRNA | ✘ |
|
| group114 | 1FFY_A_T | A: Isoleucyl-tRNA synthetase, Staphylococcus aureus (genetically engineered) T: Isoleucyl-tRNA | P41972 | acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & HUP domains & A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & Rubredoxin-related & Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | tRNA | ✘ |
|
| group114 | 3ZJT_A_B | A: Leucyl-tRNA synthetase, Escherichia coli (genetically engineered) B: tRNAleu5 uaa isoacceptor, Escherichia coli k-12 (synthetic) | P07813 | acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | tRNA | ✘ |
|
| group114 | 4CQN_A_B | A: Leucine--tRNA ligase, Escherichia coli k-12 (genetically engineered) B: Escherichia coli tRNA-leu uaa isoacceptor, Escherichia coli (synthetic) | P07813 | acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & HUP domains & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | tRNA | ✘ |
|
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