DeNovoGenesDB

S. cerevisiae

The Rules Panel enables users to set the desired criteria for identifying de novo emerged genes, while the Output Panel facilitates filtering and analysis of the resulting list.


The default table displayed was generated with the default parameters of the DENSE workflow:

However, you can try out your own combination of some of these settings using the Rules box below.

CDS Gene Phylostratum Protein size Is denovo? Is orphan?
gene-Q0080 cellular organisms 48
gene-Q0130 cellular organisms 76
rna-NM_001178148.1 TFC3 Ascomycota 1160
rna-NM_001178149.1 VPS8 cellular organisms 1274
rna-NM_001178150.1 EFB1 cellular organisms 206
rna-NM_001178151.1 SSA1 cellular organisms 642
rna-NM_001178152.1 ERP2 cellular organisms 215
rna-NM_001178153.1 FUN14 Saccharomycetales 198
rna-NM_001178154.1 SPO7 cellular organisms 259
rna-NM_001178155.2 MDM10 Eukaryota 493
rna-NM_001178156.1 SWC3 Saccharomycetales 625
rna-NM_001178157.1 CYS3 cellular organisms 394
rna-NM_001178158.2 DEP1 Eukaryota 405
rna-NM_001178159.1 SYN8 Saccharomycetales 255
rna-NM_001178160.1 NTG1 cellular organisms 399

Total number of records: 5999

Records per page: 10 | 20 | 50 | 100

Rules


Hit in NCR*
Hit in NCR* and valid synteny
Hit in NCR* in outgroup
Hit in NCR* in outgroup and valid synteny
*NCR: Non-Coding Regions

Output

x Clear all fields

logo_download Export the current table


Phylogeny

__ S. cerevisiae __| __| |__ S. paradoxus | | __| |_____ S. mikatae | | __| |________ S. kudriavzevii | | _| |___________ S. arboricola | |______________ S. bayanus
: Switching between rules will not affect the number of records in the table. It will, however, affect the definition of the "Is denovo?" column.
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