RNAprotDB

All interfaces > All interologs > Interface groups > group1 > 2ZUE_A_B

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

2ZUE_A
2ZUE_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:29 [GLU] B:917A [A] 4.06 0.03
A:29 [GLU] B:918 [G] 4.3 B:955 [U] 0.03
A:31 [LYS] B:918 [G] 4.57 B:955 [U] 60.75
A:31 [LYS] B:919 [G] 2.7 B:956 [C] 60.75
A:32 [GLU] B:920 [A] 4.92 0.11
A:33 [THR] B:920 [A] 3.48 76.71
A:34 [PRO] B:920 [A] 3.25 56.52
A:34 [PRO] B:920A [C] 3.04 56.52
A:35 [ASP] B:920A [C] 4.49 29.01
A:38 [LEU] B:920 [A] 3.71 5.12
A:42 [GLY] B:920 [A] 4.75 79.46
A:44 [PRO] B:919 [G] 3.27 B:956 [C] 63.15
A:47 [PHE] B:919 [G] 2.89 B:956 [C] base/AA stacks 80.2
A:47 [PHE] B:956 [C] 3.6 B:919 [G] 80.2
A:48 [LYS] B:919 [G] 2.89 B:956 [C] 20.07
A:48 [LYS] B:956 [C] 3.44 B:919 [G] 20.07
A:48 [LYS] B:957 [A] 4.63 20.07
A:51 [LYS] B:955 [U] 4.71 B:918 [G] 77.23
A:51 [LYS] B:956 [C] 2.59 B:919 [G] 77.23
A:82 [VAL] B:920 [A] 3.83 44.2
A:83 [ASN] B:920 [A] 4.94 52.41
A:85 [TYR] B:919 [G] 3.08 B:956 [C] 85.63
A:85 [TYR] B:920 [A] 3.12 sugar:SC base/AA stacks 85.63
A:87 [ASN] B:920 [A] 2.82 base:SC, base:SC 99.0
A:299 [LYS] B:974 [C] 4.03 48.66
A:300 [TYR] B:974 [C] 3.41 69.83
A:301 [ARG] B:974 [C] 4.18 54.49
A:303 [ALA] B:974 [C] 4.13 87.81
A:317 [ASN] B:973 [G] 3.99 54.62
A:321 [VAL] B:974 [C] 3.51 83.05
A:323 [ARG] B:974 [C] 4.48 73.22
A:324 [ARG] B:974 [C] 2.97 94.37
A:325 [SER] B:974 [C] 2.65 base:SC 89.36
A:330 [THR] B:974 [C] 4.02 88.87
A:385 [ALA] B:970 [U] 4.77 B:903 [A] 63.5
A:386 [GLU] B:970 [U] 3.67 B:903 [A] 88.51
A:386 [GLU] B:971 [C] 3.4 B:902 [G] 88.51
A:388 [LYS] B:904 [C] 2.84 B:969 [G] sugar:SC 69.86
A:388 [LYS] B:905 [C] 3.38 B:968 [G] sugar:SC 69.86
A:389 [HIS] B:902 [G] 4.03 B:971 [C] 75.98
A:389 [HIS] B:903 [A] 4.79 B:970 [U] 75.98
A:389 [HIS] B:971 [C] 2.82 B:902 [G] base:SC 75.98
A:389 [HIS] B:972 [C] 3.05 B:901 [G] 75.98
A:416 [GLU] B:905 [C] 3.89 B:968 [G] 82.04
A:419 [GLU] B:969 [G] 4.96 B:904 [C] 58.27
A:424 [LYS] B:969 [G] 2.8 B:904 [C] 63.34
A:424 [LYS] B:970 [U] 2.69 B:903 [A] 63.34
A:448 [ALA] B:938 [A] 4.84 87.26
A:451 [LEU] B:938 [A] 3.24 61.97
A:452 [ILE] B:938 [A] 3.98 74.18
A:455 [LYS] B:936 [U] 4.95 82.09
A:455 [LYS] B:937 [A] 4.77 82.09
A:455 [LYS] B:938 [A] 2.86 82.09
A:456 [ASN] B:936 [U] 4.82 74.1
A:471 [VAL] B:938 [A] 4.17 85.74
A:483 [TYR] B:912 [C] 3.8 B:923 [G] sugar:SC 48.19
A:483 [TYR] B:913 [U] 3.59 B:922 [G] 48.19
A:483 [TYR] B:914 [A] 4.9 B:908 [U] 48.19
A:484 [SER] B:914 [A] 3.08 B:908 [U] 71.32
A:486 [ASP] B:905 [C] 2.96 B:968 [G] sugar:BB 49.89
A:486 [ASP] B:906 [G] 3.87 B:967 [C] 49.89
A:487 [LYS] B:906 [G] 3.48 B:967 [C] 86.23
A:487 [LYS] B:907 [G] 2.71 B:966 [C] 86.23
A:487 [LYS] B:908 [U] 3.65 B:914 [A] base:SC 86.23
A:487 [LYS] B:913 [U] 3.77 B:922 [G] 86.23
A:487 [LYS] B:914 [A] 3.33 B:908 [U] 86.23
A:488 [LYS] B:913 [U] 4.0 B:922 [G] 57.34
A:488 [LYS] B:969 [G] 4.17 B:904 [C] 57.34
A:494 [GLU] B:925 [C] 4.97 B:910 [G] 68.51
A:498 [ASN] B:925 [C] 4.04 B:910 [G] 67.24
A:499 [PHE] B:938 [A] 4.23 78.31
A:499 [PHE] B:939 [G] 4.75 B:931 [C] 78.31
A:500 [GLU] B:924 [G] 4.7 B:911 [C] 76.2
A:500 [GLU] B:925 [C] 3.97 B:910 [G] 76.2
A:500 [GLU] B:926 [G] 4.23 B:944 [A] 76.2
A:500 [GLU] B:938 [A] 4.02 76.2
A:500 [GLU] B:939 [G] 3.35 B:931 [C] 76.2
A:501 [GLY] B:924 [G] 2.96 B:911 [C] 91.95
A:501 [GLY] B:925 [C] 3.39 B:910 [G] 91.95
A:501 [GLY] B:939 [G] 3.67 B:931 [C] 91.95
A:502 [GLU] B:912 [C] 4.96 B:923 [G] 76.8
A:502 [GLU] B:913 [U] 4.98 B:922 [G] 76.8
A:502 [GLU] B:922 [G] 4.4 B:913 [U] 76.8
A:502 [GLU] B:923 [G] 3.04 B:912 [C] base:SC, sugar:SC 76.8
A:502 [GLU] B:924 [G] 3.31 B:911 [C] sugar:BB 76.8
A:505 [PRO] B:938 [A] 4.15 85.65
A:506 [TYR] B:938 [A] 4.43 93.17
A:506 [TYR] B:939 [G] 3.45 B:931 [C] 93.17
A:506 [TYR] B:940 [C] 2.48 B:930 [G] 93.17
A:509 [TYR] B:936 [U] 2.88 sugar:SC 98.92
A:509 [TYR] B:937 [A] 3.31 98.92
A:509 [TYR] B:938 [A] 2.57 98.92
A:509 [TYR] B:939 [G] 3.58 B:931 [C] 98.92
A:512 [ALA] B:936 [U] 3.31 89.06
A:513 [ARG] B:936 [U] 3.47 99.0
A:513 [ARG] B:937 [A] 2.68 99.0
A:513 [ARG] B:939 [G] 3.59 B:931 [C] sugar:SC 99.0
A:516 [SER] B:935 [C] 4.06 79.22
A:516 [SER] B:936 [U] 3.23 base:SC 79.22
A:517 [ILE] B:935 [C] 3.51 96.03
A:517 [ILE] B:936 [U] 4.24 96.03
A:520 [LYS] B:935 [C] 4.17 87.67
A:545 [ARG] B:941 [C] 4.08 B:929 [G] 0.54
A:562 [GLN] B:917 [C] 4.55 41.8
A:562 [GLN] B:917A [A] 4.75 41.8
A:566 [ASP] B:917 [C] 4.7 36.35
A:566 [ASP] B:917A [A] 4.57 36.35
A:568 [LYS] B:917 [C] 4.41 58.77
A:570 [HIS] B:914 [A] 4.83 B:908 [U] 74.34
A:570 [HIS] B:915 [G] 3.59 B:948 [C] 74.34
A:571 [LEU] B:915 [G] 4.37 B:948 [C] 0.14
A:574 [TRP] B:914 [A] 3.59 B:908 [U] 44.83
A:577 [ASN] B:923 [G] 4.0 B:912 [C] 41.04
A:581 [SER] B:940 [C] 4.48 B:930 [G] 39.74
A:584 [ASN] B:939 [G] 3.47 B:931 [C] 89.47
A:584 [ASN] B:940 [C] 3.69 B:930 [G] 89.47
A:585 [LYS] B:940 [C] 3.89 B:930 [G] 40.48
A:585 [LYS] B:941 [C] 3.14 B:929 [G] 40.48
A:586 [PHE] B:935 [C] 4.47 89.63
A:587 [TYR] B:935 [C] 2.69 base:BB 98.81
A:587 [TYR] B:936 [U] 3.1 98.81
A:587 [TYR] B:937 [A] 3.25 98.81
A:588 [MET] B:931 [C] 3.65 B:939 [G] 67.29
A:588 [MET] B:935 [C] 4.85 67.29
A:588 [MET] B:939 [G] 3.26 B:931 [C] 67.29
A:588 [MET] B:940 [C] 3.42 B:930 [G] 67.29
A:590 [HIS] B:935 [C] 2.8 base:BB 40.8
A:591 [PRO] B:935 [C] 4.01 74.09
A:592 [VAL] B:935 [C] 3.13 base:BB 93.63
A:593 [LEU] B:935 [C] 3.02 base:BB 74.55
A:594 [LYS] B:935 [C] 4.77 46.81
A:627 [GLU] B:936 [U] 4.26 69.54
A:628 [ARG] B:936 [U] 3.4 56.93
A:629 [MET] B:936 [U] 3.01 base:BB 95.43
A:629 [MET] B:938 [A] 3.42 base:BB 95.43

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group1 2ZUE_A_B A: Arginyl-tRNA synthetase, Pyrococcus horikoshii (genetically engineered) B: tRNA-arg, Pyrococcus horikoshii (synthetic) O59147 HUP domains & Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain tRNA ✘

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1F7U_A_B 2ZUE_A_B 0.58 0.85 3.03 0.21 HUP domains & Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain tRNA compare