RNAprotDB

All interfaces > All interologs > Interface groups > group10 > 6S8B_D_U,V

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6S8B_D
6S8B_U,V
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
D:19 [HIS] V:73 [G] 3.98 U:21 [C] 98.59
D:20 [VAL] V:73 [G] 4.01 U:21 [C] 83.07
D:21 [GLY] V:72 [U] 3.19 U:22 [A] 98.21
D:21 [GLY] V:73 [G] 3.14 U:21 [C] 98.21
D:22 [SER] V:72 [U] 3.61 U:22 [A] 73.83
D:23 [GLY] V:72 [U] 3.55 U:22 [A] 98.77
D:31 [ALA] U:18 [C] 4.0 V:76 [G] 97.69
D:32 [LEU] U:18 [C] 4.1 V:76 [G] 94.61
D:32 [LEU] V:76 [G] 4.73 U:18 [C] 94.61
D:35 [GLN] V:72 [U] 4.08 U:22 [A] 96.82
D:45 [TYR] V:72 [U] 4.58 U:22 [A] 72.18
D:47 [SER] V:71 [C] 3.54 97.98
D:47 [SER] V:72 [U] 3.18 U:22 [A] 97.98
D:48 [SER] V:71 [C] 3.42 94.49
D:48 [SER] V:72 [U] 2.75 U:22 [A] 94.49
D:50 [LYS] V:69 [C] 4.07 U:25 [G] 98.71
D:50 [LYS] V:70 [C] 2.52 U:24 [G] 98.71
D:51 [GLY] V:71 [C] 3.32 98.77
D:52 [ALA] V:71 [C] 3.61 88.64
D:54 [LYS] V:69 [C] 3.38 U:25 [G] 91.32
D:54 [LYS] V:70 [C] 2.73 U:24 [G] 91.32
D:55 [SER] V:71 [C] 3.13 87.56
D:72 [LEU] V:69 [C] 3.97 U:25 [G] 85.22
D:72 [LEU] V:70 [C] 3.23 U:24 [G] 85.22
D:73 [GLY] V:69 [C] 3.99 U:25 [G] 98.77
D:73 [GLY] V:70 [C] 4.84 U:24 [G] 98.77
D:74 [GLU] V:69 [C] 2.52 U:25 [G] sugar:BB 74.12
D:75 [ASP] V:69 [C] 3.58 U:25 [G] 73.15
D:75 [ASP] V:70 [C] 4.06 U:24 [G] 73.15
D:77 [ASN] U:26 [U] 4.83 V:68 [A] 39.54
D:78 [PRO] V:68 [A] 3.41 U:26 [U] 35.48
D:78 [PRO] V:69 [C] 3.36 U:25 [G] 35.48
D:80 [GLU] V:68 [A] 3.34 U:26 [U] 50.47
D:80 [GLU] V:69 [C] 4.56 U:25 [G] 50.47
D:81 [ALA] V:68 [A] 3.28 U:26 [U] 73.56
D:81 [ALA] V:69 [C] 3.78 U:25 [G] 73.56
D:82 [SER] V:68 [A] 3.82 U:26 [U] 91.79
D:82 [SER] V:69 [C] 2.47 U:25 [G] 91.79
D:82 [SER] V:70 [C] 4.46 U:24 [G] 91.79
D:210 [ARG] U:16 [C] 4.97 V:78 [G] 85.4
D:210 [ARG] U:17 [C] 2.56 base:SC, base:SC 85.4
D:210 [ARG] V:78 [G] 2.59 U:16 [C] base:SC 85.4
D:211 [ARG] V:76 [G] 3.98 U:18 [C] 98.85
D:211 [ARG] V:78 [G] 3.3 U:16 [C] 98.85
D:212 [ILE] V:76 [G] 2.86 U:18 [C] sugar:BB 85.82
D:212 [ILE] V:77 [G] 3.18 85.82
D:212 [ILE] V:78 [G] 3.17 U:16 [C] 85.82
D:212 [ILE] V:79 [A] 3.68 U:15 [U] 85.82
D:213 [ARG] U:19 [U] 4.79 V:75 [A] 85.39
D:213 [ARG] V:75 [A] 3.73 U:19 [U] base:SC 85.39
D:213 [ARG] V:76 [G] 3.22 U:18 [C] 85.39
D:213 [ARG] V:77 [G] 3.64 85.39
D:214 [ILE] V:76 [G] 4.45 U:18 [C] 82.7
D:214 [ILE] V:77 [G] 2.73 82.7
D:214 [ILE] V:79 [A] 3.42 U:15 [U] 82.7
D:216 [ARG] V:76 [G] 3.46 U:18 [C] 59.29
D:216 [ARG] V:77 [G] 2.57 59.29
D:219 [LYS] V:79 [A] 4.2 U:15 [U] 95.36
D:219 [LYS] V:80 [A] 3.76 U:14 [U] 95.36
D:220 [VAL] V:79 [A] 4.59 U:15 [U] 85.84
D:220 [VAL] V:80 [A] 3.58 U:14 [U] 85.84
D:221 [VAL] U:15 [U] 4.46 V:79 [A] 96.44
D:221 [VAL] U:16 [C] 3.74 V:78 [G] 96.44
D:221 [VAL] V:78 [G] 4.03 U:16 [C] 96.44
D:221 [VAL] V:79 [A] 4.16 U:15 [U] 96.44
D:222 [GLU] U:16 [C] 3.32 V:78 [G] sugar:BB 44.72
D:223 [THR] U:16 [C] 3.97 V:78 [G] 5.61
D:223 [THR] U:17 [C] 4.84 5.61
D:224 [GLY] U:16 [C] 3.02 V:78 [G] sugar:BB 83.55
D:224 [GLY] U:17 [C] 3.32 83.55
D:224 [GLY] U:18 [C] 2.6 V:76 [G] sugar:BB 83.55
D:225 [GLY] U:16 [C] 3.55 V:78 [G] 65.16
D:225 [GLY] U:17 [C] 4.88 65.16
D:225 [GLY] U:18 [C] 4.12 V:76 [G] 65.16
D:225 [GLY] V:76 [G] 4.35 U:18 [C] 65.16
D:226 [LEU] U:16 [C] 3.63 V:78 [G] 95.42
D:226 [LEU] U:17 [C] 3.2 95.42
D:226 [LEU] U:18 [C] 3.74 V:76 [G] 95.42
D:226 [LEU] V:78 [G] 3.79 U:16 [C] 95.42
D:227 [TRP] U:18 [C] 3.59 V:76 [G] base/AA stacks 96.21
D:227 [TRP] V:76 [G] 3.23 U:18 [C] base/AA stacks 96.21
D:266 [LEU] V:71 [C] 4.91 78.05
D:267 [GLY] V:71 [C] 4.04 98.8
D:267 [GLY] V:73 [G] 3.52 U:21 [C] 98.8
D:267 [GLY] V:74 [G] 4.83 U:20 [C] 98.8
D:268 [GLY] V:73 [G] 3.37 U:21 [C] 98.27
D:268 [GLY] V:74 [G] 3.25 U:20 [C] 98.27
D:269 [LYS] V:73 [G] 4.63 U:21 [C] 86.62
D:269 [LYS] V:74 [G] 2.88 U:20 [C] 86.62
D:270 [GLU] V:74 [G] 3.57 U:20 [C] 97.31
D:271 [THR] V:75 [A] 3.45 U:19 [U] 95.63
D:271 [THR] V:76 [G] 4.69 U:18 [C] 95.63

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group10 6S8B_D_U,V D: Crispr-associated ramp protein, cmr4 family, Sulfolobus islandicus (strain rey15a) (natural) U: Cognate target RNA (46-mer), Sulfolobus islandicus rey15a (natural) V: crRNA, Sulfolobus islandicus rey15a (natural) F0NDX6 CRISPR-associated protein Cas7/Csa2-related ✘

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3X1L_C_I 6S8B_D_U,V 0.92 0.72 0.88 0.36 CRISPR-associated protein Cas7/Csa2-related compare