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All interfaces > All interologs > Interface groups > group100 > 4Y4O_1c_1a

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Contacts -

4Y4O_1c
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1c:2 [GLY] 1a:1060 [C] 3.21 1a:1197 [G] 92.95
1c:2 [GLY] 1a:1061 [G] 3.14 1a:1195 [C] base:BB 92.95
1c:2 [GLY] 1a:1062 [U] 3.3 1a:1194 [U] 92.95
1c:2 [GLY] 1a:1194 [U] 4.37 1a:1062 [U] 92.95
1c:2 [GLY] 1a:1197 [G] 4.66 1a:1060 [C] 92.95
1c:3 [ASN] 1a:1060 [C] 3.61 1a:1197 [G] 78.9
1c:3 [ASN] 1a:1061 [G] 4.38 1a:1195 [C] 78.9
1c:3 [ASN] 1a:1062 [U] 3.76 1a:1194 [U] 78.9
1c:3 [ASN] 1a:1063 [C] 4.6 1a:1193 [G] 78.9
1c:3 [ASN] 1a:1064 [G] 4.68 1a:1192 [C] 78.9
1c:3 [ASN] 1a:1190 [G] 3.15 sugar:SC 78.9
1c:3 [ASN] 1a:1191 [A] 2.85 1a:1066 [C] 78.9
1c:3 [ASN] 1a:1193 [G] 3.59 1a:1063 [C] base:SC 78.9
1c:4 [LYS] 1a:1060 [C] 3.82 1a:1197 [G] 98.07
1c:4 [LYS] 1a:1190 [G] 3.25 98.07
1c:4 [LYS] 1a:1191 [A] 2.97 1a:1066 [C] 98.07
1c:4 [LYS] 1a:1192 [C] 2.61 1a:1064 [G] 98.07
1c:5 [ILE] 1a:1060 [C] 4.93 1a:1197 [G] 73.9
1c:5 [ILE] 1a:1189 [C] 3.27 73.9
1c:5 [ILE] 1a:1190 [G] 2.45 73.9
1c:10 [PHE] 1a:1188 [A] 4.1 64.07
1c:10 [PHE] 1a:1189 [C] 3.54 64.07
1c:14 [ILE] 1a:1113 [C] 4.13 1a:1187 [G] 56.1
1c:26 [LYS] 1a:1255 [G] 3.33 1a:1282 [C] 54.35
1c:26 [LYS] 1a:1256 [A] 2.76 54.35
1c:26 [LYS] 1a:1279 [A] 3.95 54.35
1c:27 [LYS] 1a:1256 [A] 3.05 62.52
1c:27 [LYS] 1a:1257 [U] 3.56 62.52
1c:150 [LYS] 1a:1107 [C] 4.92 1a:1068 [G] 86.57
1c:154 [SER] 1a:1056 [U] 4.89 1a:1204 [A] 79.2
1c:154 [SER] 1a:1057 [G] 3.16 1a:1203 [C] 79.2
1c:154 [SER] 1a:1058 [G] 3.82 1a:1199 [U] 79.2
1c:155 [GLY] 1a:1056 [U] 3.64 1a:1204 [A] 99.0
1c:155 [GLY] 1a:1057 [G] 3.5 1a:1203 [C] 99.0
1c:156 [ARG] 1a:532 [A] 3.03 base:SC 96.49
1c:156 [ARG] 1a:1055 [A] 3.25 1a:1200 [C] base:SC 96.49
1c:156 [ARG] 1a:1056 [U] 4.46 1a:1204 [A] 96.49
1c:156 [ARG] 1a:1206 [G] 4.9 1a:1052 [U] 96.49
1c:160 [ALA] 1a:1055 [A] 4.32 1a:1200 [C] 73.46
1c:161 [GLU] 1a:532 [A] 4.48 69.72
1c:161 [GLU] 1a:1055 [A] 2.37 1a:1200 [C] sugar:BB 69.72
1c:161 [GLU] 1a:1056 [U] 3.18 1a:1204 [A] 69.72
1c:162 [GLN] 1a:1055 [A] 4.49 1a:1200 [C] 86.6
1c:162 [GLN] 1a:1056 [U] 3.29 1a:1204 [A] 86.6
1c:162 [GLN] 1a:1196 [U] 3.07 base:SC 86.6
1c:163 [ALA] 1a:1055 [A] 4.51 1a:1200 [C] 93.49
1c:163 [ALA] 1a:1056 [U] 2.42 1a:1204 [A] 93.49
1c:163 [ALA] 1a:1057 [G] 4.26 1a:1203 [C] 93.49
1c:164 [ARG] 1a:1057 [G] 4.57 1a:1203 [C] 92.73
1c:165 [THR] 1a:1057 [G] 4.83 1a:1203 [C] 60.03
1c:167 [TRP] 1a:1192 [C] 4.0 1a:1064 [G] 35.97
1c:167 [TRP] 1a:1193 [G] 2.79 1a:1063 [C] 35.97
1c:171 [GLY] 1a:1106 [G] 3.5 1a:1069 [C] 98.1
1c:171 [GLY] 1a:1107 [C] 4.79 1a:1068 [G] 98.1
1c:172 [ARG] 1a:1106 [G] 3.4 1a:1069 [C] 49.46
1c:172 [ARG] 1a:1107 [C] 3.4 1a:1068 [G] 49.46
1c:173 [VAL] 1a:1106 [G] 4.1 1a:1069 [C] 74.19
1c:173 [VAL] 1a:1107 [C] 2.69 1a:1068 [G] 74.19
1c:173 [VAL] 1a:1108 [G] 3.82 74.19
1c:174 [PRO] 1a:1107 [C] 3.36 1a:1068 [G] 82.65
1c:174 [PRO] 1a:1108 [G] 3.88 82.65
1c:175 [LEU] 1a:1107 [C] 4.93 1a:1068 [G] 76.1
1c:175 [LEU] 1a:1108 [G] 3.15 76.1
1c:176 [HIS] 1a:1065 [U] 3.88 70.94
1c:176 [HIS] 1a:1108 [G] 3.55 70.94
1c:176 [HIS] 1a:1109 [C] 2.82 70.94
1c:176 [HIS] 1a:1111 [A] 3.03 70.94
1c:176 [HIS] 1a:1112 [C] 3.19 base:BB 70.94
1c:176 [HIS] 1a:1189 [C] 3.49 70.94
1c:176 [HIS] 1a:1190 [G] 3.36 70.94
1c:177 [THR] 1a:1110 [A] 4.06 92.79
1c:177 [THR] 1a:1111 [A] 2.69 base:SC 92.79
1c:177 [THR] 1a:1112 [C] 3.23 92.79
1c:178 [LEU] 1a:1112 [C] 2.77 base:BB 67.19
1c:178 [LEU] 1a:1113 [C] 4.01 1a:1187 [G] 67.19
1c:178 [LEU] 1a:1188 [A] 4.22 67.19
1c:179 [ARG] 1a:1111 [A] 4.19 74.34
1c:179 [ARG] 1a:1112 [C] 2.68 base:BB 74.34
1c:180 [ALA] 1a:1112 [C] 4.7 77.95
1c:184 [TYR] 1a:1059 [C] 4.1 1a:1198 [G] 71.01
1c:186 [PHE] 1a:1057 [G] 3.68 1a:1203 [C] 0.9
1c:186 [PHE] 1a:1058 [G] 3.76 1a:1199 [U] 0.9
1c:188 [LEU] 1a:1057 [G] 3.32 1a:1203 [C] 19.16
1c:188 [LEU] 1a:1204 [A] 3.75 1a:1056 [U] 19.16
1c:190 [ARG] 1a:1204 [A] 4.22 1a:1056 [U] 16.85
1c:190 [ARG] 1a:1205 [U] 3.9 16.85
1c:191 [THR] 1a:1206 [G] 3.95 1a:1052 [U] 91.83
1c:192 [THR] 1a:421 [U] 3.69 55.17
1c:192 [THR] 1a:1206 [G] 2.81 1a:1052 [U] sugar:BB 55.17
1c:192 [THR] 1a:1207 [2MG] 4.22 1a:1051 [C] 55.17
1c:193 [TYR] 1a:532 [A] 3.93 54.56
1c:193 [TYR] 1a:1055 [A] 3.53 1a:1200 [C] 54.56
1c:193 [TYR] 1a:1206 [G] 3.44 1a:1052 [U] 54.56
1c:194 [GLY] 1a:1055 [A] 4.15 1a:1200 [C] 98.35
1c:194 [GLY] 1a:1205 [U] 3.95 98.35
1c:194 [GLY] 1a:1206 [G] 3.19 1a:1052 [U] 98.35
1c:195 [VAL] 1a:1055 [A] 4.95 1a:1200 [C] 55.71
1c:195 [VAL] 1a:1056 [U] 2.89 1a:1204 [A] sugar:BB 55.71
1c:195 [VAL] 1a:1057 [G] 3.51 1a:1203 [C] 55.71
1c:195 [VAL] 1a:1205 [U] 3.27 55.71
1c:195 [VAL] 1a:1206 [G] 4.95 1a:1052 [U] 55.71
1c:196 [LEU] 1a:1057 [G] 4.09 1a:1203 [C] 80.79
1c:197 [GLY] 1a:1057 [G] 3.26 1a:1203 [C] 97.66
1c:197 [GLY] 1a:1058 [G] 3.93 1a:1199 [U] 97.66
1c:198 [VAL] 1a:1058 [G] 4.74 1a:1199 [U] 81.52
1c:199 [LYS] 1a:1058 [G] 3.23 1a:1199 [U] 86.03
1c:199 [LYS] 1a:1059 [C] 2.82 1a:1198 [G] 86.03

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group100 4Y4O_1c_1a 1c: 30s ribosomal protein s3, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) P80372 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1c_1a 7RYG_c_a 0.47 0.91 5.12 0.26 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare
4Y4O_1c_1a 7O7Y_Ac_A2 0.75 0.92 2.16 0.21 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) compare
4Y4O_1c_1a 7O7Z_Ac_A2 0.76 0.92 2.2 0.21 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) compare
4Y4O_1c_1a 6S0X_c_a 0.52 0.95 3.84 0.64 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare
4Y4O_1c_1a 7K00_C_A 0.83 0.98 0.9 0.76 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare