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All interfaces > All interologs > Interface groups > group100 > 4Y4O_1c_1a vs 7RYG_c_a

Interface analysis


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Licorice
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RNA

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Licorice
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Common contacts -

4Y4O_1c
4Y4O_1a
7RYG_c
7RYG_a
Conserved?
1c:195 [VAL] 1a:1057 [G] c:196 [ILE] a:1054 [G] ✔
1c:5 [ILE] 1a:1189 [C] c:5 [VAL] a:1186 [C] ✔
1c:5 [ILE] 1a:1190 [G] c:5 [VAL] a:1187 [G] ✔
1c:14 [ILE] 1a:1113 [C] c:14 [VAL] a:1110 [C] ✔
1c:172 [ARG] 1a:1106 [G] c:172 [ARG] a:1103 [G] ✔
1c:172 [ARG] 1a:1107 [C] c:172 [ARG] a:1104 [C] ✔
1c:155 [GLY] 1a:1057 [G] c:154 [SER] a:1054 [G] ✔
1c:178 [LEU] 1a:1112 [C] c:178 [LEU] a:1109 [C] ✔
1c:178 [LEU] 1a:1113 [C] c:178 [LEU] a:1110 [C] ✔
1c:178 [LEU] 1a:1188 [A] c:178 [LEU] a:1185 [A] ✔
1c:179 [ARG] 1a:1111 [A] c:179 [ARG] a:1108 [A] ✔
1c:179 [ARG] 1a:1112 [C] c:179 [ARG] a:1109 [C] ✔
1c:192 [THR] 1a:1207 [2MG] c:191 [THR] a:1203 [G] ✔
1c:197 [GLY] 1a:1058 [G] c:198 [VAL] a:1055 [G] ✔
1c:162 [GLN] 1a:1055 [A] c:162 [ILE] a:1052 [A] ✔
1c:162 [GLN] 1a:1056 [U] c:162 [ILE] a:1053 [U] ✔
1c:162 [GLN] 1a:1196 [U] c:162 [ILE] a:1193 [A] ✔
1c:3 [ASN] 1a:1060 [C] c:3 [GLN] a:1057 [U] ✔
1c:3 [ASN] 1a:1061 [G] c:3 [GLN] a:1058 [G] ✔
1c:3 [ASN] 1a:1062 [U] c:3 [GLN] a:1059 [U] ✔
1c:3 [ASN] 1a:1190 [G] c:3 [GLN] a:1187 [G] ✔
1c:3 [ASN] 1a:1191 [A] c:3 [GLN] a:1188 [A] ✔
1c:198 [VAL] 1a:1058 [G] c:199 [LYS] a:1055 [G] ✔
1c:4 [LYS] 1a:1190 [G] c:4 [LYS] a:1187 [G] ✔
1c:4 [LYS] 1a:1191 [A] c:4 [LYS] a:1188 [A] ✔
1c:4 [LYS] 1a:1192 [C] c:4 [LYS] a:1189 [C] ✔
1c:196 [LEU] 1a:1057 [G] c:197 [GLY] a:1054 [G] ✔
1c:2 [GLY] 1a:1062 [U] c:2 [GLY] a:1059 [U] ✔
1c:194 [GLY] 1a:1055 [A] c:193 [TYR] a:1052 [A] ✔
1c:174 [PRO] 1a:1107 [C] c:174 [PRO] a:1104 [C] ✔
1c:174 [PRO] 1a:1108 [G] c:174 [PRO] a:1105 [G] ✔
1c:176 [HIS] 1a:1108 [G] c:176 [HIS] a:1105 [G] ✔
1c:176 [HIS] 1a:1109 [C] c:176 [HIS] a:1106 [C] ✔
1c:176 [HIS] 1a:1111 [A] c:176 [HIS] a:1108 [A] ✔
1c:176 [HIS] 1a:1112 [C] c:176 [HIS] a:1109 [C] ✔
1c:176 [HIS] 1a:1189 [C] c:176 [HIS] a:1186 [C] ✔
1c:176 [HIS] 1a:1190 [G] c:176 [HIS] a:1187 [G] ✔
1c:175 [LEU] 1a:1108 [G] c:175 [LEU] a:1105 [G] ✔
1c:163 [ALA] 1a:1057 [G] c:164 [ARG] a:1054 [G] ✔
1c:177 [THR] 1a:1110 [A] c:177 [THR] a:1107 [A] ✔
1c:177 [THR] 1a:1111 [A] c:177 [THR] a:1108 [A] ✔
1c:177 [THR] 1a:1112 [C] c:177 [THR] a:1109 [C] ✔
1c:173 [VAL] 1a:1107 [C] c:173 [VAL] a:1104 [C] ✔
1c:173 [VAL] 1a:1108 [G] c:173 [VAL] a:1105 [G] ✔
1c:156 [ARG] 1a:1056 [U] c:155 [GLY] a:1053 [U] ✔
1c:161 [GLU] 1a:1055 [A] c:160 [ALA] a:1052 [A] ✔
1c:10 [PHE] 1a:1188 [A] c:10 [ILE] a:1185 [A] ✔
1c:10 [PHE] 1a:1189 [C] c:10 [ILE] a:1186 [C] ✔
1c:195 [VAL] 1a:1055 [A] c:196 [ILE] a:1052 [A] ❌ 7RYG_c_a
1c:195 [VAL] 1a:1056 [U] c:196 [ILE] a:1053 [U] ❌ 7RYG_c_a
1c:195 [VAL] 1a:1205 [U] c:196 [ILE] a:1202 [U] ❌ 7RYG_c_a
1c:5 [ILE] 1a:1060 [C] c:5 [VAL] a:1057 [U] ❌ 7RYG_c_a
1c:155 [GLY] 1a:1056 [U] c:154 [SER] a:1053 [U] ❌ 7RYG_c_a
1c:193 [TYR] 1a:532 [A] c:192 [THR] a:529 [A] ❌ 7RYG_c_a
1c:193 [TYR] 1a:1055 [A] c:192 [THR] a:1052 [A] ❌ 7RYG_c_a
1c:197 [GLY] 1a:1057 [G] c:198 [VAL] a:1054 [G] ❌ 7RYG_c_a
1c:160 [ALA] 1a:1055 [A] c:159 [GLY] a:1052 [A] ❌ 7RYG_c_a
1c:3 [ASN] 1a:1193 [G] c:3 [GLN] a:1190 [G] ❌ 7RYG_c_a
1c:4 [LYS] 1a:1060 [C] c:4 [LYS] a:1057 [U] ❌ 7RYG_c_a
1c:2 [GLY] 1a:1060 [C] c:2 [GLY] a:1057 [U] ❌ 7RYG_c_a
1c:2 [GLY] 1a:1061 [G] c:2 [GLY] a:1058 [G] ❌ 7RYG_c_a
1c:194 [GLY] 1a:1205 [U] c:193 [TYR] a:1202 [U] ❌ 7RYG_c_a
1c:175 [LEU] 1a:1107 [C] c:175 [LEU] a:1104 [C] ❌ 7RYG_c_a
1c:163 [ALA] 1a:1055 [A] c:164 [ARG] a:1052 [A] ❌ 7RYG_c_a
1c:163 [ALA] 1a:1056 [U] c:164 [ARG] a:1053 [U] ❌ 7RYG_c_a
1c:173 [VAL] 1a:1106 [G] c:173 [VAL] a:1103 [G] ❌ 7RYG_c_a
1c:156 [ARG] 1a:532 [A] c:155 [GLY] a:529 [A] ❌ 7RYG_c_a
1c:156 [ARG] 1a:1055 [A] c:155 [GLY] a:1052 [A] ❌ 7RYG_c_a
1c:161 [GLU] 1a:532 [A] c:160 [ALA] a:529 [A] ❌ 7RYG_c_a
1c:161 [GLU] 1a:1056 [U] c:160 [ALA] a:1053 [U] ❌ 7RYG_c_a
1c:155 [GLY] 1a:1058 [G] c:154 [SER] a:1055 [G] ❌ 4Y4O_1c_1a
1c:156 [ARG] 1a:1057 [G] c:155 [GLY] a:1054 [G] ❌ 4Y4O_1c_1a
1c:160 [ALA] 1a:532 [A] c:159 [GLY] a:529 [A] ❌ 4Y4O_1c_1a
1c:176 [HIS] 1a:1191 [A] c:176 [HIS] a:1188 [A] ❌ 4Y4O_1c_1a
1c:191 [THR] 1a:1205 [U] c:190 [GLU] a:1202 [U] ❌ 4Y4O_1c_1a
1c:191 [THR] 1a:1204 [A] c:190 [GLU] a:1201 [A] ❌ 4Y4O_1c_1a
1c:193 [TYR] 1a:1207 [2MG] c:192 [THR] a:1203 [G] ❌ 4Y4O_1c_1a
1c:194 [GLY] 1a:1207 [2MG] c:193 [TYR] a:1203 [G] ❌ 4Y4O_1c_1a
1c:194 [GLY] 1a:532 [A] c:193 [TYR] a:529 [A] ❌ 4Y4O_1c_1a
1c:196 [LEU] 1a:1058 [G] c:197 [GLY] a:1055 [G] ❌ 4Y4O_1c_1a
1c:198 [VAL] 1a:1059 [C] c:199 [LYS] a:1056 [C] ❌ 4Y4O_1c_1a
1c:2 [GLY] 1a:1191 [A] c:2 [GLY] a:1188 [A] ❌ 4Y4O_1c_1a
1c:2 [GLY] 1a:1193 [G] c:2 [GLY] a:1190 [G] ❌ 4Y4O_1c_1a
1c:2 [GLY] 1a:1190 [G] c:2 [GLY] a:1187 [G] ❌ 4Y4O_1c_1a
1c:27 [LYS] 1a:1257 [U] c:28 [GLN] a:1254 [U] ❌ 7RYG_c:28, 7RYG_a:1254 no longer at interface
1c:26 [LYS] 1a:1279 [A] c:26 [PRO] a:1276 [A] ❌ 7RYG_c:26, 7RYG_a:1276 no longer at interface
1c:192 [THR] 1a:421 [U] c:191 [THR] a:417 [U] ❌ 7RYG_a:417 no longer at interface
1c:3 [ASN] 1a:1063 [C] c:3 [GLN] a:1060 [C] ❌ 7RYG_a:1060 no longer at interface
1c:3 [ASN] 1a:1064 [G] c:3 [GLN] a:1061 [G] ❌ 7RYG_a:1061 no longer at interface
1c:2 [GLY] 1a:1194 [U] c:2 [GLY] a:1191 [U] ❌ 7RYG_a:1191 no longer at interface
1c:2 [GLY] 1a:1197 [G] c:2 [GLY] a:1194 [A] ❌ 7RYG_a:1194 no longer at interface
1c:176 [HIS] 1a:1065 [U] c:176 [HIS] a:1062 [U] ❌ 7RYG_a:1062 no longer at interface
1c:184 [TYR] 1a:1059 [C] c:183 [ASP] a:1056 [C] ❌ 7RYG_c:183 no longer at interface
1c:164 [ARG] 1a:1057 [G] c:165 [THR] a:1054 [G] ❌ 7RYG_c:165 no longer at interface
1c:150 [LYS] 1a:1107 [C] c:149 [ILE] a:1104 [C] ❌ 7RYG_c:149 no longer at interface
1c:27 [LYS] 1a:1256 [A] c:28 [GLN] a:1253 [U] ❌ 7RYG_c:28 no longer at interface
1c:26 [LYS] 1a:1255 [G] c:26 [PRO] a:1252 [G] ❌ 7RYG_c:26 no longer at interface
1c:26 [LYS] 1a:1256 [A] c:26 [PRO] a:1253 [U] ❌ 7RYG_c:26 no longer at interface
1c:186 [PHE] 1a:1057 [G] c:185 [ALA] a:1054 [G] ❌ 7RYG_c:185 no longer at interface
1c:186 [PHE] 1a:1058 [G] c:185 [ALA] a:1055 [G] ❌ 7RYG_c:185 no longer at interface
1c:165 [THR] 1a:1057 [G] c:166 [GLU] a:1054 [G] ❌ 7RYG_c:166 no longer at interface
1c:199 [LYS] 1a:1058 [G] c:200 [VAL] a:1055 [G] ❌ 7RYG_c:200 no longer at interface
1c:199 [LYS] 1a:1059 [C] c:200 [VAL] a:1056 [C] ❌ 7RYG_c:200 no longer at interface
1c:167 [TRP] 1a:1192 [C] c:168 [TYR] a:1189 [C] ❌ 7RYG_c:168 no longer at interface
1c:167 [TRP] 1a:1193 [G] c:168 [TYR] a:1190 [G] ❌ 7RYG_c:168 no longer at interface
1c:154 [SER] 1a:1056 [U] c:153 [VAL] a:1053 [U] ❌ 7RYG_c:153 no longer at interface
1c:154 [SER] 1a:1057 [G] c:153 [VAL] a:1054 [G] ❌ 7RYG_c:153 no longer at interface
1c:154 [SER] 1a:1058 [G] c:153 [VAL] a:1055 [G] ❌ 7RYG_c:153 no longer at interface
1c:190 [ARG] 1a:1204 [A] c:189 [ALA] a:1201 [A] ❌ 7RYG_c:189 no longer at interface
1c:190 [ARG] 1a:1205 [U] c:189 [ALA] a:1202 [U] ❌ 7RYG_c:189 no longer at interface
1c:188 [LEU] 1a:1057 [G] c:187 [MET] a:1054 [G] ❌ 7RYG_c:187 no longer at interface
1c:188 [LEU] 1a:1204 [A] c:187 [MET] a:1201 [A] ❌ 7RYG_c:187 no longer at interface
1c:126 [ARG] 1a:532 [A] c:127 [ARG] a:529 [A] ❌ 4Y4O_1c:126 no longer at interface
1c:157 [ILE] 1a:1055 [A] c:156 [ARG] a:1052 [A] ❌ 4Y4O_1c:157 no longer at interface
1c:157 [ILE] 1a:1056 [U] c:156 [ARG] a:1053 [U] ❌ 4Y4O_1c:157 no longer at interface
1c:159 [GLY] 1a:532 [A] c:158 [GLY] a:529 [A] ❌ 4Y4O_1c:159 no longer at interface
1c:166 [GLU] 1a:1192 [C] c:167 [TRP] a:1189 [C] ❌ 4Y4O_1c:166 no longer at interface
1c:166 [GLU] 1a:1193 [G] c:167 [TRP] a:1190 [G] ❌ 4Y4O_1c:166 no longer at interface
1c:168 [ALA] 1a:1107 [C] c:169 [ARG] a:1104 [C] ❌ 4Y4O_1c:168 no longer at interface
1c:170 [GLN] 1a:1106 [G] c:171 [GLY] a:1103 [G] ❌ 4Y4O_1c:170 no longer at interface
1c:185 [GLY] 1a:1059 [C] c:184 [TYR] a:1056 [C] ❌ 4Y4O_1c:185 no longer at interface
1c:187 [ALA] 1a:1058 [G] c:186 [THR] a:1055 [G] ❌ 4Y4O_1c:187 no longer at interface
1c:189 [ALA] 1a:1205 [U] c:188 [ARG] a:1202 [U] ❌ 4Y4O_1c:189 no longer at interface
1c:189 [ALA] 1a:1057 [G] c:188 [ARG] a:1054 [G] ❌ 4Y4O_1c:189 no longer at interface
1c:189 [ALA] 1a:1204 [A] c:188 [ARG] a:1201 [A] ❌ 4Y4O_1c:189 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA 0.91 5.12 0.26 0.98 0.91 0.67 0.97 0.47 0.42 0.17 0.53


Other pairs involving 4Y4O_1c_1a or 7RYG_c_a

Total number of entries: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0X_c_a 7RYG_c_a 0.55 0.96 3.4 0.67 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare
4Y4O_1c_1a 6S0X_c_a 0.52 0.95 3.84 0.64 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare
4Y4O_1c_1a 7K00_C_A 0.83 0.98 0.9 0.76 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare
4Y4O_1c_1a 7O7Y_Ac_A2 0.75 0.92 2.16 0.21 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) compare
4Y4O_1c_1a 7RYG_c_a 0.47 0.91 5.12 0.26 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare
4Y4O_1c_1a 7O7Z_Ac_A2 0.76 0.92 2.2 0.21 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) compare
7K00_C_A 7RYG_c_a 0.70 0.93 4.95 0.51 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare