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All interfaces > All interologs > Interface groups > group100 > 6S0X_c_a

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S0X_c
6S0X_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
c:2 [GLY] a:1070 [U] 4.87 a:1208 [A] 91.48
c:2 [GLY] a:1071 [U] 4.85 a:1207 [A] 91.48
c:2 [GLY] a:1203 [G] 4.41 a:1074 [C] 91.48
c:2 [GLY] a:1204 [U] 2.81 a:1073 [U] 91.48
c:3 [GLN] a:1070 [U] 4.6 a:1208 [A] 87.52
c:3 [GLN] a:1071 [U] 2.86 a:1207 [A] base:SC 87.52
c:3 [GLN] a:1072 [G] 3.66 a:1205 [C] 87.52
c:3 [GLN] a:1073 [U] 3.84 a:1204 [U] 87.52
c:3 [GLN] a:1204 [U] 3.13 a:1073 [U] 87.52
c:3 [GLN] a:1205 [C] 3.16 a:1072 [G] 87.52
c:3 [GLN] a:1207 [A] 3.3 a:1071 [U] base:SC 87.52
c:4 [LYS] a:1070 [U] 4.54 a:1208 [A] 98.34
c:4 [LYS] a:1071 [U] 2.94 a:1207 [A] 98.34
c:4 [LYS] a:1200 [G] 3.99 98.34
c:4 [LYS] a:1201 [A] 3.3 a:1077 [C] 98.34
c:4 [LYS] a:1202 [C] 4.69 98.34
c:4 [LYS] a:1203 [G] 3.64 a:1074 [C] 98.34
c:5 [ILE] a:1071 [U] 3.33 a:1207 [A] 84.06
c:5 [ILE] a:1200 [G] 4.82 84.06
c:6 [ASN] a:1070 [U] 2.89 a:1208 [A] 86.83
c:6 [ASN] a:1071 [U] 4.82 a:1207 [A] 86.83
c:10 [LEU] a:1198 [A] 4.6 57.1
c:10 [LEU] a:1199 [U] 3.4 57.1
c:14 [ILE] a:1124 [C] 4.62 a:1197 [G] 49.18
c:153 [SER] a:1069 [G] 4.07 a:1209 [U] 89.49
c:155 [ARG] a:1066 [A] 2.39 a:1210 [C] 98.65
c:155 [ARG] a:1067 [U] 4.87 a:1214 [A] 98.65
c:158 [GLY] a:540 [A] 2.99 88.16
c:159 [ALA] a:540 [A] 3.32 68.47
c:160 [ASP] a:540 [A] 3.35 74.72
c:160 [ASP] a:1066 [A] 3.56 a:1210 [C] sugar:SC 74.72
c:160 [ASP] a:1067 [U] 3.69 a:1214 [A] 74.72
c:161 [ILE] a:1067 [U] 4.41 a:1214 [A] 83.48
c:170 [GLY] a:1116 [A] 4.4 a:1081 [U] 98.31
c:170 [GLY] a:1117 [G] 2.83 a:1080 [C] sugar:BB 98.31
c:171 [THR] a:1116 [A] 2.96 a:1081 [U] 58.54
c:171 [THR] a:1117 [G] 2.48 a:1080 [C] 58.54
c:171 [THR] a:1118 [C] 3.91 a:1079 [G] 58.54
c:172 [VAL] a:1117 [G] 3.83 a:1080 [C] sugar:BB 80.74
c:172 [VAL] a:1118 [C] 3.24 a:1079 [G] 80.74
c:172 [VAL] a:1119 [G] 3.86 80.74
c:173 [PRO] a:1118 [C] 3.82 a:1079 [G] 89.01
c:173 [PRO] a:1119 [G] 3.15 89.01
c:174 [LEU] a:1118 [C] 3.37 a:1079 [G] 82.18
c:174 [LEU] a:1119 [G] 2.63 82.18
c:174 [LEU] a:1202 [C] 4.42 82.18
c:175 [HIS] a:1118 [C] 4.96 a:1079 [G] 79.62
c:175 [HIS] a:1119 [G] 2.68 79.62
c:175 [HIS] a:1199 [U] 3.1 79.62
c:175 [HIS] a:1200 [G] 3.09 79.62
c:175 [HIS] a:1201 [A] 4.6 a:1077 [C] 79.62
c:175 [HIS] a:1202 [C] 4.46 79.62
c:176 [THR] a:1119 [G] 4.46 87.92
c:176 [THR] a:1123 [C] 4.84 87.92
c:177 [LEU] a:1123 [C] 3.39 65.23
c:177 [LEU] a:1124 [C] 3.3 a:1197 [G] 65.23
c:177 [LEU] a:1199 [U] 3.27 65.23
c:178 [ARG] a:1122 [A] 3.25 base:SC 70.47
c:178 [ARG] a:1123 [C] 2.78 base:SC, base:SC 70.47
c:183 [TYR] a:1070 [U] 4.64 a:1208 [A] 78.36
c:185 [HIS] a:1068 [G] 2.39 a:1213 [C] sugar:SC 1.22
c:186 [ALA] a:1068 [G] 4.85 a:1213 [C] 33.81
c:187 [GLU] a:1214 [A] 4.15 a:1067 [U] 1.67
c:187 [GLU] a:1215 [U] 4.18 1.67
c:189 [ASP] a:1216 [G] 3.84 40.26
c:191 [THR] a:1216 [G] 3.57 43.43
c:192 [TYR] a:1066 [A] 2.92 a:1210 [C] base:BB 50.38
c:192 [TYR] a:1216 [G] 4.04 50.38
c:193 [GLY] a:1066 [A] 4.25 a:1210 [C] 97.96
c:193 [GLY] a:1067 [U] 4.68 a:1214 [A] 97.96
c:193 [GLY] a:1216 [G] 4.67 97.96
c:194 [LYS] a:1066 [A] 3.56 a:1210 [C] 57.12
c:194 [LYS] a:1067 [U] 3.1 a:1214 [A] base:SC 57.12
c:194 [LYS] a:1068 [G] 3.43 a:1213 [C] 57.12
c:194 [LYS] a:1214 [A] 4.35 a:1067 [U] 57.12
c:194 [LYS] a:1215 [U] 4.56 57.12
c:194 [LYS] a:1216 [G] 3.41 57.12
c:196 [GLY] a:1068 [G] 4.2 a:1213 [C] 98.5
c:196 [GLY] a:1069 [G] 4.01 a:1209 [U] 98.5
c:198 [LYS] a:1068 [G] 4.72 a:1213 [C] 97.72
c:198 [LYS] a:1069 [G] 2.85 a:1209 [U] 97.72
c:198 [LYS] a:1070 [U] 4.78 a:1208 [A] 97.72

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group100 6S0X_c_a c: 30s ribosomal protein s3, Staphylococcus aureus (natural) a: 16s ribosomal RNA, Staphylococcus aureus (natural) A0A077UU26 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1c_1a 6S0X_c_a 0.52 0.95 3.84 0.64 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare
6S0X_c_a 7K00_C_A 0.54 0.96 3.49 0.7 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare
6S0X_c_a 7O7Y_Ac_A2 0.47 0.89 2.86 0.15 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) compare
6S0X_c_a 7O7Z_Ac_A2 0.48 0.89 2.84 0.15 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) compare
6S0X_c_a 7RYG_c_a 0.55 0.96 3.4 0.67 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare