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All interfaces > All interologs > Interface groups > group100 > 7K00_C_A

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Licorice
Surface

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7K00_C
7K00_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
C:2 [GLY] A:1062 [U] 3.22 A:1194 [U] 90.74
C:2 [GLY] A:1063 [C] 4.44 A:1193 [G] 90.74
C:2 [GLY] A:1064 [G] 4.89 A:1190 [G] 90.74
C:2 [GLY] A:1190 [G] 3.75 A:1064 [G] 90.74
C:2 [GLY] A:1191 [A] 3.16 A:1066 [C] 90.74
C:2 [GLY] A:1193 [G] 2.62 A:1063 [C] base:BB 90.74
C:2 [GLY] A:1194 [U] 4.55 A:1062 [U] 90.74
C:3 [GLN] A:1060 [U] 3.27 A:1197 [A] base/AA stacks 82.74
C:3 [GLN] A:1061 [G] 2.93 A:1195 [C] base:SC 82.74
C:3 [GLN] A:1062 [U] 3.66 A:1194 [U] 82.74
C:3 [GLN] A:1190 [G] 3.1 A:1064 [G] sugar:BB 82.74
C:3 [GLN] A:1191 [A] 3.73 A:1066 [C] 82.74
C:4 [LYS] A:1060 [U] 4.58 A:1197 [A] 98.97
C:4 [LYS] A:1190 [G] 3.22 A:1064 [G] 98.97
C:4 [LYS] A:1191 [A] 2.51 A:1066 [C] 98.97
C:4 [LYS] A:1192 [C] 2.64 98.97
C:5 [VAL] A:1189 [U] 3.32 79.81
C:5 [VAL] A:1190 [G] 2.77 A:1064 [G] 79.81
C:10 [ILE] A:1188 [A] 3.61 54.73
C:10 [ILE] A:1189 [U] 4.21 54.73
C:14 [ILE] A:1113 [C] 3.72 A:1187 [G] 49.47
C:25 [ASN] A:1278 [G] 4.72 55.31
C:26 [THR] A:1255 [G] 4.46 A:1282 [C] 46.78
C:127 [ARG] A:421 [U] 3.32 base/AA stacks 85.06
C:150 [LYS] A:1192 [C] 4.67 87.31
C:154 [SER] A:1057 [G] 3.27 A:1203 [C] 84.27
C:154 [SER] A:1058 [G] 3.09 A:1199 [U] 84.27
C:155 [GLY] A:1056 [U] 3.55 A:1204 [A] 99.0
C:155 [GLY] A:1057 [G] 3.46 A:1203 [C] 99.0
C:156 [ARG] A:532 [A] 3.35 98.1
C:156 [ARG] A:1055 [A] 3.21 A:1200 [C] base:SC 98.1
C:156 [ARG] A:1056 [U] 4.29 A:1204 [A] 98.1
C:156 [ARG] A:1206 [G] 4.78 A:1052 [U] 98.1
C:160 [ALA] A:1055 [A] 4.43 A:1200 [C] 67.43
C:161 [GLU] A:532 [A] 3.44 68.62
C:161 [GLU] A:534 [U] 4.88 68.62
C:161 [GLU] A:1055 [A] 2.46 A:1200 [C] sugar:BB 68.62
C:161 [GLU] A:1056 [U] 3.69 A:1204 [A] 68.62
C:162 [ILE] A:1055 [A] 4.45 A:1200 [C] 82.79
C:162 [ILE] A:1056 [U] 3.54 A:1204 [A] 82.79
C:162 [ILE] A:1196 [A] 4.07 82.79
C:163 [ALA] A:1055 [A] 4.46 A:1200 [C] 95.11
C:163 [ALA] A:1056 [U] 2.85 A:1204 [A] 95.11
C:163 [ALA] A:1057 [G] 4.15 A:1203 [C] 95.11
C:164 [ARG] A:1057 [G] 4.72 A:1203 [C] 89.3
C:165 [THR] A:1057 [G] 4.83 A:1203 [C] 62.09
C:167 [TRP] A:1192 [C] 3.74 37.02
C:167 [TRP] A:1193 [G] 2.88 A:1063 [C] 37.02
C:169 [ARG] A:1106 [G] 3.33 A:1069 [C] 43.95
C:169 [ARG] A:1107 [C] 3.31 A:1068 [G] 43.95
C:171 [GLY] A:1106 [G] 3.81 A:1069 [C] 96.83
C:171 [GLY] A:1107 [C] 4.95 A:1068 [G] 96.83
C:172 [ARG] A:1106 [G] 3.37 A:1069 [C] 51.36
C:172 [ARG] A:1107 [C] 3.44 A:1068 [G] 51.36
C:173 [VAL] A:1106 [G] 4.13 A:1069 [C] 73.25
C:173 [VAL] A:1107 [C] 2.93 A:1068 [G] 73.25
C:173 [VAL] A:1108 [G] 4.12 73.25
C:174 [PRO] A:1107 [C] 3.28 A:1068 [G] 86.55
C:174 [PRO] A:1108 [G] 3.97 86.55
C:175 [LEU] A:1107 [C] 4.68 A:1068 [G] 74.04
C:175 [LEU] A:1108 [G] 3.11 74.04
C:176 [HIS] A:1065 [U] 4.01 71.66
C:176 [HIS] A:1108 [G] 3.06 71.66
C:176 [HIS] A:1109 [C] 3.13 71.66
C:176 [HIS] A:1111 [A] 3.04 71.66
C:176 [HIS] A:1112 [C] 2.84 base:BB 71.66
C:176 [HIS] A:1189 [U] 3.77 71.66
C:176 [HIS] A:1190 [G] 3.16 A:1064 [G] 71.66
C:176 [HIS] A:1191 [A] 4.64 A:1066 [C] 71.66
C:177 [THR] A:1110 [A] 4.35 87.94
C:177 [THR] A:1111 [A] 2.81 base:SC 87.94
C:177 [THR] A:1112 [C] 3.55 87.94
C:178 [LEU] A:1112 [C] 2.84 base:BB 65.91
C:178 [LEU] A:1113 [C] 3.8 A:1187 [G] 65.91
C:178 [LEU] A:1188 [A] 4.27 65.91
C:179 [ARG] A:1111 [A] 4.7 71.79
C:179 [ARG] A:1112 [C] 2.95 base:BB 71.79
C:180 [ALA] A:1112 [C] 4.87 68.69
C:184 [TYR] A:1059 [C] 4.49 A:1198 [G] 75.16
C:188 [GLU] A:1057 [G] 2.55 A:1203 [C] sugar:SC 23.83
C:188 [GLU] A:1058 [G] 4.05 A:1199 [U] 23.83
C:188 [GLU] A:1204 [A] 3.79 A:1056 [U] sugar:SC 23.83
C:190 [HIS] A:1204 [A] 3.81 A:1056 [U] 3.78
C:190 [HIS] A:1205 [U] 3.87 3.78
C:191 [THR] A:1206 [G] 4.09 A:1052 [U] 96.28
C:192 [THR] A:421 [U] 3.67 35.88
C:192 [THR] A:532 [A] 4.91 35.88
C:192 [THR] A:1206 [G] 2.81 A:1052 [U] sugar:BB 35.88
C:192 [THR] A:1207 [2MG] 4.96 A:1051 [C] 35.88
C:193 [TYR] A:532 [A] 4.11 59.46
C:193 [TYR] A:1055 [A] 3.48 A:1200 [C] 59.46
C:193 [TYR] A:1206 [G] 3.65 A:1052 [U] 59.46
C:194 [GLY] A:1055 [A] 4.21 A:1200 [C] 97.53
C:194 [GLY] A:1056 [U] 4.99 A:1204 [A] 97.53
C:194 [GLY] A:1205 [U] 3.62 97.53
C:194 [GLY] A:1206 [G] 3.22 A:1052 [U] 97.53
C:195 [VAL] A:1056 [U] 2.76 A:1204 [A] sugar:BB 57.21
C:195 [VAL] A:1057 [G] 3.57 A:1203 [C] 57.21
C:195 [VAL] A:1204 [A] 4.66 A:1056 [U] 57.21
C:195 [VAL] A:1205 [U] 3.51 57.21
C:196 [ILE] A:1057 [G] 4.28 A:1203 [C] 68.4
C:197 [GLY] A:1057 [G] 3.19 A:1203 [C] 97.67
C:197 [GLY] A:1058 [G] 3.92 A:1199 [U] 97.67
C:198 [VAL] A:1058 [G] 4.5 A:1199 [U] 84.6
C:199 [LYS] A:1058 [G] 3.32 A:1199 [U] 95.44
C:199 [LYS] A:1059 [C] 2.83 A:1198 [G] 95.44
C:206 [GLU] A:1111 [A] 4.96 13.81

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group100 7K00_C_A C: 30s ribosomal protein s3, Escherichia coli (natural) A: 16s rRNA, Escherichia coli (natural) P0A7V3 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0X_c_a 7K00_C_A 0.54 0.96 3.49 0.7 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare
4Y4O_1c_1a 7K00_C_A 0.83 0.98 0.9 0.76 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare
7K00_C_A 7RYG_c_a 0.70 0.93 4.95 0.51 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare
7K00_C_A 7O7Y_Ac_A2 0.75 0.91 1.98 0.18 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) compare
7K00_C_A 7O7Z_Ac_A2 0.75 0.91 2.03 0.19 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) compare