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All interfaces > All interologs > Interface groups > group100 > 7O7Y_Ac_A2

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_Ac
7O7Y_A2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Ac:4 [GLN] A2:1553 [G] 3.86 39.01
Ac:4 [GLN] A2:1579 [U] 3.14 39.01
Ac:5 [ILE] A2:1554 [C] 4.85 58.62
Ac:5 [ILE] A2:1579 [U] 2.93 58.62
Ac:5 [ILE] A2:1580 [A] 4.63 58.62
Ac:6 [SER] A2:1552 [U] 4.44 53.75
Ac:6 [SER] A2:1579 [U] 3.16 base:BB 53.75
Ac:6 [SER] A2:1580 [A] 3.74 53.75
Ac:7 [LYS] A2:1579 [U] 4.26 39.95
Ac:7 [LYS] A2:1580 [A] 2.96 39.95
Ac:8 [LYS] A2:1549 [G] 4.91 A2:1585 [G] 49.69
Ac:8 [LYS] A2:1550 [U] 2.76 49.69
Ac:8 [LYS] A2:1551 [G] 3.45 49.69
Ac:9 [ARG] A2:1551 [G] 4.92 68.0
Ac:9 [ARG] A2:1552 [U] 3.25 68.0
Ac:9 [ARG] A2:1553 [G] 3.09 68.0
Ac:9 [ARG] A2:1554 [C] 3.84 68.0
Ac:27 [ARG] A2:1498 [G] 4.27 39.99
Ac:27 [ARG] A2:1499 [A] 3.15 A2:1334 [U] 39.99
Ac:135 [GLU] A2:1486 [U] 4.02 A2:1342 [C] 79.34
Ac:139 [SER] A2:1335 [G] 3.47 A2:1497 [U] 81.0
Ac:139 [SER] A2:1336 [G] 4.02 A2:1493 [U] 81.0
Ac:140 [GLY] A2:1334 [U] 3.66 A2:1499 [A] 98.47
Ac:140 [GLY] A2:1335 [G] 3.54 A2:1497 [U] 98.47
Ac:141 [LYS] A2:629 [A] 3.09 95.64
Ac:141 [LYS] A2:1333 [A] 3.28 A2:1494 [C] base:SC 95.64
Ac:141 [LYS] A2:1334 [U] 4.03 A2:1499 [A] 95.64
Ac:141 [LYS] A2:1501 [G] 4.47 A2:1330 [U] 95.64
Ac:143 [ARG] A2:608 [U] 3.33 sugar:SC base/AA stacks 69.03
Ac:145 [GLN] A2:629 [A] 3.79 69.13
Ac:145 [GLN] A2:1333 [A] 2.6 A2:1494 [C] sugar:SC, sugar:BB 69.13
Ac:145 [GLN] A2:1334 [U] 3.53 A2:1499 [A] 69.13
Ac:146 [ARG] A2:1333 [A] 4.47 A2:1494 [C] 98.44
Ac:146 [ARG] A2:1334 [U] 3.39 A2:1499 [A] 98.44
Ac:146 [ARG] A2:1490 [A] 3.14 base/AA stacks 98.44
Ac:147 [ALA] A2:1333 [A] 4.69 A2:1494 [C] 88.52
Ac:147 [ALA] A2:1334 [U] 2.7 A2:1499 [A] 88.52
Ac:147 [ALA] A2:1335 [G] 4.22 A2:1497 [U] 88.52
Ac:148 [LYS] A2:1335 [G] 4.99 A2:1497 [U] 82.19
Ac:151 [LYS] A2:1485 [A] 4.6 88.7
Ac:151 [LYS] A2:1486 [U] 2.42 A2:1342 [C] 88.7
Ac:151 [LYS] A2:1487 [A] 3.33 A2:1341 [U] 88.7
Ac:155 [GLY] A2:1384 [A2M] 3.99 A2:1347 [U] sugar:BB 98.87
Ac:155 [GLY] A2:1385 [C] 4.93 A2:1346 [G] 98.87
Ac:156 [LEU] A2:1384 [A2M] 3.28 A2:1347 [U] 45.56
Ac:156 [LEU] A2:1385 [C] 3.3 A2:1346 [G] 45.56
Ac:157 [MET] A2:1384 [A2M] 4.53 A2:1347 [U] 61.64
Ac:157 [MET] A2:1385 [C] 2.86 A2:1346 [G] 61.64
Ac:157 [MET] A2:1386 [G] 4.94 61.64
Ac:158 [ILE] A2:1385 [C] 4.21 A2:1346 [G] 70.67
Ac:158 [ILE] A2:1386 [G] 3.74 70.67
Ac:159 [HIS] A2:1385 [C] 3.38 A2:1346 [G] sugar:SC 72.79
Ac:159 [HIS] A2:1386 [G] 2.78 72.79
Ac:159 [HIS] A2:1483 [C] 4.05 72.79
Ac:159 [HIS] A2:1484 [A] 3.17 72.79
Ac:159 [HIS] A2:1485 [A] 3.57 72.79
Ac:159 [HIS] A2:1486 [U] 4.01 A2:1342 [C] 72.79
Ac:160 [SER] A2:1386 [G] 3.01 72.36
Ac:160 [SER] A2:1387 [A] 2.31 72.36
Ac:160 [SER] A2:1389 [A] 3.39 base:BB 72.36
Ac:160 [SER] A2:1483 [C] 3.98 72.36
Ac:160 [SER] A2:1484 [A] 3.33 72.36
Ac:161 [GLY] A2:1389 [A] 3.37 98.87
Ac:161 [GLY] A2:1390 [C] 3.39 A2:1482 [G] 98.87
Ac:161 [GLY] A2:1482 [G] 4.3 A2:1390 [C] 98.87
Ac:161 [GLY] A2:1483 [C] 2.98 base:BB 98.87
Ac:161 [GLY] A2:1484 [A] 4.78 98.87
Ac:162 [ASP] A2:1389 [A] 5.0 42.89
Ac:162 [ASP] A2:1390 [C] 3.15 A2:1482 [G] base:BB 42.89
Ac:162 [ASP] A2:1391 [U] 3.11 A2:1481 [A] 42.89
Ac:162 [ASP] A2:1482 [G] 3.85 A2:1390 [C] 42.89
Ac:162 [ASP] A2:1483 [C] 4.99 42.89
Ac:163 [PRO] A2:1389 [A] 4.46 58.11
Ac:163 [PRO] A2:1390 [C] 3.32 A2:1482 [G] 58.11
Ac:164 [VAL] A2:1483 [C] 4.98 57.09
Ac:166 [TYR] A2:1390 [C] 4.47 A2:1482 [G] 3.74
Ac:172 [VAL] A2:1336 [G] 3.73 A2:1493 [U] 2.12
Ac:172 [VAL] A2:1337 [C] 4.28 A2:1492 [G] 2.12
Ac:173 [ARG] A2:1335 [G] 4.95 A2:1497 [U] 49.33
Ac:174 [HIS] A2:1335 [G] 3.09 A2:1497 [U] 46.31
Ac:174 [HIS] A2:1336 [G] 3.34 A2:1493 [U] sugar:SC 46.31
Ac:174 [HIS] A2:1499 [A] 4.11 A2:1334 [U] 46.31
Ac:176 [LEU] A2:1500 [U] 3.44 11.49
Ac:176 [LEU] A2:1501 [G] 4.08 A2:1330 [U] 11.49
Ac:177 [LEU] A2:1501 [G] 4.34 A2:1330 [U] 64.96
Ac:178 [ARG] A2:610 [PSU] 4.41 A2:635 [A] 82.74
Ac:178 [ARG] A2:1501 [G] 3.38 A2:1330 [U] 82.74
Ac:178 [ARG] A2:1502 [C] 4.74 A2:1329 [OMG] 82.74
Ac:179 [GLN] A2:629 [A] 3.28 base:SC 60.21
Ac:179 [GLN] A2:1333 [A] 3.97 A2:1494 [C] 60.21
Ac:179 [GLN] A2:1501 [G] 3.41 A2:1330 [U] 60.21
Ac:180 [GLY] A2:1333 [A] 4.35 A2:1494 [C] 98.07
Ac:180 [GLY] A2:1500 [U] 4.1 98.07
Ac:180 [GLY] A2:1501 [G] 3.32 A2:1330 [U] 98.07
Ac:181 [VAL] A2:1334 [U] 2.87 A2:1499 [A] sugar:BB 63.13
Ac:181 [VAL] A2:1335 [G] 3.64 A2:1497 [U] 63.13
Ac:181 [VAL] A2:1499 [A] 4.19 A2:1334 [U] 63.13
Ac:181 [VAL] A2:1500 [U] 3.29 63.13
Ac:182 [LEU] A2:1335 [G] 4.23 A2:1497 [U] 74.71
Ac:183 [GLY] A2:1335 [G] 3.15 A2:1497 [U] 98.7
Ac:183 [GLY] A2:1336 [G] 3.95 A2:1493 [U] 98.7
Ac:184 [ILE] A2:1335 [G] 4.96 A2:1497 [U] 82.76
Ac:184 [ILE] A2:1336 [G] 4.64 A2:1493 [U] 82.76
Ac:185 [LYS] A2:1336 [G] 3.29 A2:1493 [U] 63.59
Ac:185 [LYS] A2:1337 [C] 2.72 A2:1492 [G] 63.59
Ac:189 [MET] A2:1385 [C] 4.61 A2:1346 [G] 71.54
Ac:205 [PRO] A2:1389 [A] 3.73 59.33
Ac:205 [PRO] A2:1390 [C] 3.6 A2:1482 [G] 59.33
Ac:206 [ASP] A2:1388 [G] 3.18 base:SC 76.96
Ac:206 [ASP] A2:1389 [A] 4.05 76.96

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group100 7O7Y_Ac_A2 Ac: 40s ribosomal protein s3, Oryctolagus cuniculus (natural) A2: 18s rRNA, Oryctolagus cuniculus (natural) G1TNM3 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Eukaryotic small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0X_c_a 7O7Y_Ac_A2 0.47 0.89 2.86 0.15 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) compare
4Y4O_1c_1a 7O7Y_Ac_A2 0.75 0.92 2.16 0.21 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) compare
7K00_C_A 7O7Y_Ac_A2 0.75 0.91 1.98 0.18 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) compare