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All interfaces > All interologs > Interface groups > group100 > 7RYG_c_a

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7RYG_c
7RYG_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
c:2 [GLY] a:1059 [U] 3.95 a:1191 [U] 90.81
c:2 [GLY] a:1187 [G] 4.62 a:1061 [G] 90.81
c:2 [GLY] a:1188 [A] 3.54 a:1063 [C] 90.81
c:2 [GLY] a:1190 [G] 3.62 a:1060 [C] base:BB 90.81
c:3 [GLN] a:1057 [U] 3.11 a:1194 [A] base/AA stacks 86.65
c:3 [GLN] a:1058 [G] 3.14 a:1192 [C] 86.65
c:3 [GLN] a:1059 [U] 4.16 a:1191 [U] 86.65
c:3 [GLN] a:1187 [G] 4.25 a:1061 [G] 86.65
c:3 [GLN] a:1188 [A] 4.91 a:1063 [C] 86.65
c:4 [LYS] a:1187 [G] 3.56 a:1061 [G] 97.8
c:4 [LYS] a:1188 [A] 3.29 a:1063 [C] 97.8
c:4 [LYS] a:1189 [C] 2.87 97.8
c:5 [VAL] a:1186 [C] 3.76 76.03
c:5 [VAL] a:1187 [G] 3.12 a:1061 [G] 76.03
c:10 [ILE] a:1185 [A] 3.34 57.48
c:10 [ILE] a:1186 [C] 4.06 57.48
c:14 [VAL] a:1110 [C] 3.66 a:1184 [G] 64.61
c:27 [LYS] a:1252 [G] 4.99 a:1279 [C] 67.57
c:27 [LYS] a:1253 [U] 2.72 67.57
c:127 [ARG] a:529 [A] 3.98 89.13
c:154 [SER] a:1054 [G] 3.71 a:1200 [C] 90.58
c:154 [SER] a:1055 [G] 3.94 a:1196 [U] 90.58
c:155 [GLY] a:1053 [U] 3.9 a:1201 [A] 99.0
c:155 [GLY] a:1054 [G] 3.5 a:1200 [C] 99.0
c:156 [ARG] a:1052 [A] 3.39 a:1197 [C] base:SC 95.47
c:156 [ARG] a:1053 [U] 4.47 a:1201 [A] 95.47
c:158 [GLY] a:529 [A] 2.21 base:BB 71.35
c:159 [GLY] a:529 [A] 4.05 91.33
c:160 [ALA] a:1052 [A] 4.57 a:1197 [C] 70.88
c:161 [GLU] a:1052 [A] 2.56 a:1197 [C] sugar:BB 75.99
c:161 [GLU] a:1053 [U] 4.06 a:1201 [A] 75.99
c:161 [GLU] a:1193 [A] 3.74 75.99
c:162 [ILE] a:1052 [A] 4.36 a:1197 [C] 84.24
c:162 [ILE] a:1053 [U] 3.54 a:1201 [A] 84.24
c:162 [ILE] a:1193 [A] 4.33 84.24
c:163 [ALA] a:1052 [A] 4.67 a:1197 [C] 92.84
c:163 [ALA] a:1053 [U] 2.89 a:1201 [A] 92.84
c:163 [ALA] a:1054 [G] 4.18 a:1200 [C] 92.84
c:164 [ARG] a:1054 [G] 4.76 a:1200 [C] 85.24
c:167 [TRP] a:1189 [C] 4.28 51.51
c:167 [TRP] a:1190 [G] 3.3 a:1060 [C] 51.51
c:169 [ARG] a:1104 [C] 4.58 a:1065 [G] 48.89
c:171 [GLY] a:1103 [G] 4.55 a:1066 [C] 96.95
c:172 [ARG] a:1103 [G] 3.86 a:1066 [C] 48.64
c:172 [ARG] a:1104 [C] 3.18 a:1065 [G] 48.64
c:173 [VAL] a:1104 [C] 4.03 a:1065 [G] 74.69
c:173 [VAL] a:1105 [G] 4.28 74.69
c:174 [PRO] a:1104 [C] 4.1 a:1065 [G] 89.45
c:174 [PRO] a:1105 [G] 3.95 89.45
c:175 [LEU] a:1105 [G] 3.89 79.0
c:176 [HIS] a:1105 [G] 3.68 77.74
c:176 [HIS] a:1106 [C] 3.28 77.74
c:176 [HIS] a:1108 [A] 3.3 77.74
c:176 [HIS] a:1109 [C] 3.31 base:BB 77.74
c:176 [HIS] a:1186 [C] 3.8 77.74
c:176 [HIS] a:1187 [G] 3.21 a:1061 [G] 77.74
c:176 [HIS] a:1188 [A] 4.88 a:1063 [C] 77.74
c:177 [THR] a:1107 [A] 4.72 86.12
c:177 [THR] a:1108 [A] 3.36 base:SC 86.12
c:177 [THR] a:1109 [C] 3.54 86.12
c:178 [LEU] a:1109 [C] 3.09 base:BB, base:BB 71.45
c:178 [LEU] a:1110 [C] 3.78 a:1184 [G] 71.45
c:178 [LEU] a:1185 [A] 4.78 71.45
c:179 [ARG] a:1108 [A] 4.84 71.01
c:179 [ARG] a:1109 [C] 3.17 base:BB 71.01
c:184 [TYR] a:1056 [C] 4.43 a:1195 [G] 80.64
c:186 [THR] a:1055 [G] 4.51 a:1196 [U] 30.39
c:188 [ARG] a:1054 [G] 3.22 a:1200 [C] base:SC 27.46
c:188 [ARG] a:1201 [A] 2.24 a:1053 [U] base:SC 27.46
c:188 [ARG] a:1202 [U] 3.56 sugar:SC 27.46
c:190 [GLU] a:1201 [A] 4.52 a:1053 [U] 27.11
c:190 [GLU] a:1202 [U] 3.95 27.11
c:191 [THR] a:1203 [G] 4.73 a:1049 [U] 92.64
c:192 [THR] a:1203 [G] 3.53 a:1049 [U] sugar:BB 61.57
c:193 [TYR] a:529 [A] 2.54 base:SC 64.96
c:193 [TYR] a:1052 [A] 3.79 a:1197 [C] 64.96
c:193 [TYR] a:1203 [G] 3.92 a:1049 [U] 64.96
c:194 [GLY] a:1052 [A] 4.72 a:1197 [C] 98.02
c:194 [GLY] a:1202 [U] 3.83 98.02
c:194 [GLY] a:1203 [G] 3.79 a:1049 [U] 98.02
c:195 [THR] a:1053 [U] 3.07 a:1201 [A] sugar:BB 58.31
c:195 [THR] a:1054 [G] 3.7 a:1200 [C] 58.31
c:195 [THR] a:1202 [U] 3.76 58.31
c:196 [ILE] a:1054 [G] 4.63 a:1200 [C] 68.85
c:197 [GLY] a:1054 [G] 3.61 a:1200 [C] 98.65
c:197 [GLY] a:1055 [G] 4.07 a:1196 [U] 98.65
c:198 [VAL] a:1055 [G] 4.93 a:1196 [U] 84.67
c:199 [LYS] a:1055 [G] 3.46 a:1196 [U] 93.36
c:199 [LYS] a:1056 [C] 3.1 a:1195 [G] 93.36
c:212 [LYS] a:1150 [G] 4.92 a:1117 [C] 58.09

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group100 7RYG_c_a c: 30s ribosomal protein s3, Acinetobacter baumannii ab0057 (natural) a: 16s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) V5V9N0 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1c_1a 7RYG_c_a 0.47 0.91 5.12 0.26 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare
6S0X_c_a 7RYG_c_a 0.55 0.96 3.4 0.67 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare
7K00_C_A 7RYG_c_a 0.70 0.93 4.95 0.51 Ribosomal protein S3-C & Prokaryotic type KH domain (KH-domain type II) Bacterial small subunit ribosomal RNA compare