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All interfaces > All interologs > Interface groups > group101 > 4Y4O_1e_1a

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Licorice
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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1e
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1e:14 [ARG] 1a:17 [U] 3.56 1a:918 [A] 43.88
1e:14 [ARG] 1a:18 [C] 2.73 1a:917 [G] 43.88
1e:14 [ARG] 1a:1079 [G] 2.97 sugar:SC 43.88
1e:14 [ARG] 1a:1080 [A] 3.9 1a:1077 [G] 43.88
1e:15 [ARG] 1a:16 [A] 4.3 1a:919 [A] 76.58
1e:15 [ARG] 1a:17 [U] 4.81 1a:918 [A] 76.58
1e:16 [THR] 1a:16 [A] 3.19 1a:919 [A] 85.66
1e:16 [THR] 1a:17 [U] 4.56 1a:918 [A] 85.66
1e:16 [THR] 1a:1080 [A] 3.43 1a:1077 [G] 85.66
1e:16 [THR] 1a:1081 [G] 2.98 1a:1076 [C] 85.66
1e:17 [ALA] 1a:15 [G] 3.03 1a:920 [U] base:BB 66.35
1e:17 [ALA] 1a:16 [A] 3.31 1a:919 [A] sugar:BB 66.35
1e:17 [ALA] 1a:1080 [A] 3.8 1a:1077 [G] 66.35
1e:17 [ALA] 1a:1081 [G] 3.68 1a:1076 [C] 66.35
1e:18 [ARG] 1a:15 [G] 3.75 1a:920 [U] 79.19
1e:18 [ARG] 1a:921 [U] 3.74 1a:1396 [A] 79.19
1e:18 [ARG] 1a:1070 [U] 3.3 1a:1105 [A] 79.19
1e:18 [ARG] 1a:1071 [C] 4.43 1a:1104 [G] 79.19
1e:18 [ARG] 1a:1081 [G] 4.1 1a:1076 [C] 79.19
1e:19 [MET] 1a:15 [G] 3.87 1a:920 [U] 77.67
1e:19 [MET] 1a:921 [U] 2.64 1a:1396 [A] base:BB, sugar:BB 77.67
1e:19 [MET] 1a:922 [G] 3.02 1a:1395 [C] 77.67
1e:19 [MET] 1a:1396 [A] 3.68 1a:921 [U] 77.67
1e:19 [MET] 1a:1397 [C] 4.55 77.67
1e:19 [MET] 1a:1398 [A] 3.99 77.67
1e:20 [GLN] 1a:921 [U] 4.84 1a:1396 [A] 80.5
1e:20 [GLN] 1a:922 [G] 3.16 1a:1395 [C] 80.5
1e:20 [GLN] 1a:923 [A] 4.93 1a:1393 [U] 80.5
1e:20 [GLN] 1a:1069 [C] 3.89 1a:1106 [G] 80.5
1e:20 [GLN] 1a:1070 [U] 2.67 1a:1105 [A] 80.5
1e:20 [GLN] 1a:1398 [A] 3.08 base:BB 80.5
1e:21 [ALA] 1a:922 [G] 3.49 1a:1395 [C] 57.25
1e:21 [ALA] 1a:923 [A] 3.44 1a:1393 [U] 57.25
1e:21 [ALA] 1a:1398 [A] 4.15 57.25
1e:22 [GLY] 1a:1194 [U] 3.11 1a:1062 [U] 82.31
1e:22 [GLY] 1a:1195 [C] 4.62 1a:1061 [G] 82.31
1e:22 [GLY] 1a:1398 [A] 3.9 82.31
1e:23 [GLY] 1a:1398 [A] 3.94 98.01
1e:24 [ARG] 1a:15 [G] 2.93 1a:920 [U] sugar:SC, sugar:SC 74.25
1e:24 [ARG] 1a:1396 [A] 4.0 1a:921 [U] 74.25
1e:24 [ARG] 1a:1397 [C] 2.89 74.25
1e:25 [ARG] 1a:1069 [C] 2.94 1a:1106 [G] 24.41
1e:25 [ARG] 1a:1070 [U] 2.71 1a:1105 [A] 24.41
1e:25 [ARG] 1a:1081 [G] 4.95 1a:1076 [C] 24.41
1e:25 [ARG] 1a:1192 [C] 2.66 1a:1064 [G] base:SC 24.41
1e:25 [ARG] 1a:1193 [G] 3.29 1a:1063 [C] sugar:SC 24.41
1e:27 [ARG] 1a:1071 [C] 3.49 1a:1104 [G] 62.95
1e:27 [ARG] 1a:1081 [G] 3.95 1a:1076 [C] 62.95
1e:27 [ARG] 1a:1082 [G] 4.38 1a:1075 [C] 62.95
1e:45 [PHE] 1a:1079 [G] 3.96 24.25
1e:45 [PHE] 1a:1080 [A] 3.74 1a:1077 [G] 24.25
1e:47 [LYS] 1a:1077 [G] 3.45 1a:1080 [A] 86.19
1e:47 [LYS] 1a:1079 [G] 3.69 86.19
1e:47 [LYS] 1a:1080 [A] 3.55 1a:1077 [G] 86.19
1e:47 [LYS] 1a:1081 [G] 4.72 1a:1076 [C] 86.19
1e:48 [ALA] 1a:1072 [G] 4.33 1a:1103 [C] 62.54
1e:49 [PRO] 1a:1071 [C] 3.72 1a:1104 [G] 16.3
1e:49 [PRO] 1a:1072 [G] 3.7 1a:1103 [C] 16.3
1e:53 [LEU] 1a:1072 [G] 4.12 1a:1103 [C] 0.85
1e:57 [LYS] 1a:1072 [G] 3.73 1a:1103 [C] 88.84
1e:57 [LYS] 1a:1073 [U] 3.1 1a:1102 [A] 88.84
1e:60 [TYR] 1a:1073 [U] 4.52 1a:1102 [A] 2.16
1e:60 [TYR] 1a:1074 [G] 3.38 1a:1083 [U] 2.16
1e:61 [TYR] 1a:1074 [G] 3.73 1a:1083 [U] 22.54
1e:64 [ARG] 1a:1074 [G] 2.99 1a:1083 [U] 65.97
1e:64 [ARG] 1a:1075 [C] 3.96 1a:1082 [G] 65.97
1e:79 [GLU] 1a:4 [U] 4.13 33.08
1e:83 [GLU] 1a:863 [U] 4.85 75.32
1e:84 [PHE] 1a:1078 [U] 3.68 35.23
1e:85 [GLY] 1a:864 [A] 3.55 48.54
1e:86 [ALA] 1a:19 [C] 3.39 1a:916 [G] 70.15
1e:86 [ALA] 1a:20 [U] 3.32 70.15
1e:86 [ALA] 1a:864 [A] 4.11 70.15
1e:87 [SER] 1a:19 [C] 4.01 1a:916 [G] 77.58
1e:90 [VAL] 1a:7 [G] 4.22 15.58
1e:92 [LYS] 1a:4 [U] 4.8 46.17
1e:92 [LYS] 1a:6 [G] 4.45 46.17
1e:92 [LYS] 1a:7 [G] 3.35 base:SC, base:SC 46.17
1e:93 [PRO] 1a:6 [G] 4.26 77.77
1e:94 [ALA] 1a:6 [G] 3.52 75.77
1e:95 [ALA] 1a:5 [U] 3.25 51.73
1e:95 [ALA] 1a:6 [G] 3.13 base:BB 51.73
1e:98 [THR] 1a:6 [G] 3.16 base:SC 69.58
1e:101 [ILE] 1a:7 [G] 4.38 62.65
1e:101 [ILE] 1a:8 [A] 3.47 62.65
1e:102 [ALA] 1a:8 [A] 3.03 84.78
1e:103 [GLY] 1a:8 [A] 3.36 69.3
1e:103 [GLY] 1a:9 [G] 4.48 1a:25 [C] 69.3
1e:104 [ALA] 1a:8 [A] 4.77 30.33
1e:107 [ARG] 1a:8 [A] 4.1 65.46
1e:119 [LEU] 1a:6 [G] 3.47 53.36
1e:119 [LEU] 1a:7 [G] 3.95 53.36
1e:120 [THR] 1a:7 [G] 2.5 sugar:BB 68.6
1e:120 [THR] 1a:8 [A] 3.17 68.6
1e:121 [LYS] 1a:7 [G] 3.72 86.54
1e:121 [LYS] 1a:8 [A] 3.55 86.54
1e:121 [LYS] 1a:9 [G] 2.62 1a:25 [C] 86.54
1e:121 [LYS] 1a:558 [G] 4.29 1a:26 [A] 86.54
1e:121 [LYS] 1a:559 [A] 2.95 86.54
1e:122 [GLU] 1a:8 [A] 4.98 48.29
1e:122 [GLU] 1a:9 [G] 2.79 1a:25 [C] 48.29
1e:122 [GLU] 1a:10 [A] 4.59 1a:24 [U] 48.29
1e:123 [LEU] 1a:7 [G] 4.7 23.9
1e:123 [LEU] 1a:560 [U] 3.87 1a:298 [A] 23.9
1e:124 [GLY] 1a:20 [U] 4.85 87.8
1e:125 [SER] 1a:18 [C] 4.73 1a:917 [G] 92.04
1e:125 [SER] 1a:19 [C] 2.35 1a:916 [G] 92.04
1e:125 [SER] 1a:20 [U] 3.71 92.04
1e:126 [ARG] 1a:9 [G] 3.35 1a:25 [C] 52.88
1e:126 [ARG] 1a:10 [A] 3.57 1a:24 [U] 52.88
1e:126 [ARG] 1a:558 [G] 3.71 1a:26 [A] 52.88
1e:126 [ARG] 1a:559 [A] 2.29 52.88
1e:127 [ASN] 1a:17 [U] 4.93 1a:918 [A] 86.43
1e:127 [ASN] 1a:18 [C] 2.95 1a:917 [G] 86.43
1e:127 [ASN] 1a:19 [C] 2.92 1a:916 [G] 86.43
1e:129 [ILE] 1a:18 [C] 4.29 1a:917 [G] 33.19
1e:129 [ILE] 1a:1078 [U] 3.84 33.19
1e:129 [ILE] 1a:1079 [G] 4.57 33.19
1e:130 [ASN] 1a:18 [C] 3.28 1a:917 [G] 91.66
1e:130 [ASN] 1a:19 [C] 3.18 1a:916 [G] 91.66
1e:130 [ASN] 1a:1078 [U] 2.74 base:SC, sugar:SC 91.66
1e:133 [TYR] 1a:1078 [U] 3.38 47.0
1e:133 [TYR] 1a:1079 [G] 3.2 47.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group101 4Y4O_1e_1a 1e: 30s ribosomal protein s5, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHQ5 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1e_1a 7K00_E_A 0.83 0.98 0.91 0.44 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA compare
4Y4O_1e_1a 7O7Z_Ab_A2 0.67 0.93 1.9 0.16 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like compare
4Y4O_1e_1a 7O7Y_Ab_A2 0.67 0.93 1.93 0.17 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like compare
4Y4O_1e_1a 7RYG_e_a 0.81 0.92 2.08 0.5 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA compare
4Y4O_1e_1a 6S0X_e_a 0.59 0.96 2.62 0.5 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA compare