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All interfaces > All interologs > Interface groups > group101 > 6S0X_e_a

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S0X_e
6S0X_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
e:21 [VAL] a:1091 [A] 3.36 a:1088 [G] 86.86
e:21 [VAL] a:1092 [G] 3.28 a:1087 [C] 86.86
e:22 [ALA] a:16 [G] 4.18 a:929 [U] 60.28
e:22 [ALA] a:17 [A] 3.92 a:928 [A] 60.28
e:22 [ALA] a:1092 [G] 4.23 a:1087 [C] 60.28
e:23 [LYS] a:930 [U] 4.47 a:1406 [A] 74.69
e:23 [LYS] a:1092 [G] 3.28 a:1087 [C] 74.69
e:23 [LYS] a:1093 [A] 2.37 a:1086 [U] 74.69
e:24 [VAL] a:16 [G] 3.33 a:929 [U] 71.65
e:24 [VAL] a:930 [U] 2.31 a:1406 [A] sugar:BB 71.65
e:24 [VAL] a:931 [G] 3.74 a:1405 [C] 71.65
e:24 [VAL] a:1406 [A] 4.67 a:930 [U] 71.65
e:24 [VAL] a:1408 [A] 3.94 71.65
e:25 [VAL] a:930 [U] 3.26 a:1406 [A] 77.67
e:25 [VAL] a:931 [G] 3.32 a:1405 [C] 77.67
e:25 [VAL] a:1408 [A] 4.63 77.67
e:26 [LYS] a:931 [G] 3.33 a:1405 [C] 55.55
e:26 [LYS] a:932 [A] 3.29 55.55
e:26 [LYS] a:1398 [U] 4.25 a:938 [A] 55.55
e:29 [ARG] a:16 [G] 3.37 a:929 [U] 67.59
e:30 [ARG] a:1082 [C] 2.85 a:1115 [G] 40.35
e:30 [ARG] a:1083 [G] 4.83 a:1114 [C] 40.35
e:32 [ARG] a:1091 [A] 4.93 a:1088 [G] 66.58
e:32 [ARG] a:1092 [G] 3.06 a:1087 [C] 66.58
e:52 [LYS] a:1088 [G] 3.11 a:1091 [A] base:SC 83.2
e:52 [LYS] a:1090 [G] 4.32 83.2
e:52 [LYS] a:1091 [A] 2.72 a:1088 [G] 83.2
e:52 [LYS] a:1092 [G] 3.87 a:1087 [C] 83.2
e:54 [GLN] a:1083 [G] 4.07 a:1114 [C] 0.86
e:62 [LYS] a:1084 [U] 3.94 a:1113 [A] 83.04
e:62 [LYS] a:1085 [G] 3.0 a:1094 [U] 83.04
e:65 [GLU] a:1085 [G] 4.31 a:1094 [U] 36.77
e:69 [LYS] a:1085 [G] 4.82 a:1094 [U] 58.77
e:69 [LYS] a:1086 [U] 4.4 a:1093 [A] 58.77
e:84 [THR] a:5 [A] 4.35 34.92
e:88 [ARG] a:872 [U] 3.95 72.54
e:89 [TYR] a:1089 [U] 4.8 32.55
e:90 [GLY] a:872 [U] 4.76 43.61
e:90 [GLY] a:873 [A] 3.36 43.61
e:91 [SER] a:19 [C] 4.36 a:926 [G] 74.01
e:91 [SER] a:20 [C] 3.14 a:925 [G] 74.01
e:91 [SER] a:21 [U] 4.97 74.01
e:91 [SER] a:873 [A] 4.23 74.01
e:97 [LYS] a:5 [A] 3.22 46.57
e:97 [LYS] a:6 [U] 3.41 46.57
e:97 [LYS] a:7 [G] 3.7 46.57
e:97 [LYS] a:8 [G] 3.89 base:SC 46.57
e:98 [PRO] a:5 [A] 4.89 79.31
e:98 [PRO] a:7 [G] 4.36 79.31
e:99 [ALA] a:7 [G] 3.45 75.72
e:100 [ALA] a:6 [U] 4.56 58.52
e:106 [ILE] a:7 [G] 4.61 55.22
e:107 [ALA] a:9 [A] 3.93 79.05
e:108 [GLY] a:9 [A] 3.28 68.99
e:109 [GLY] a:9 [A] 4.8 19.75
e:111 [VAL] a:9 [A] 3.49 50.64
e:123 [ILE] a:7 [G] 4.8 61.99
e:124 [LEU] a:7 [G] 3.52 52.93
e:124 [LEU] a:8 [G] 3.35 52.93
e:125 [SER] a:8 [G] 2.45 sugar:BB 65.89
e:125 [SER] a:9 [A] 3.3 65.89
e:126 [LYS] a:8 [G] 2.84 base:SC 87.17
e:126 [LYS] a:9 [A] 4.19 87.17
e:126 [LYS] a:566 [G] 4.99 a:27 [A] 87.17
e:126 [LYS] a:568 [A] 2.85 87.17
e:127 [SER] a:9 [A] 3.26 45.53
e:127 [SER] a:10 [G] 2.97 a:26 [C] 45.53
e:128 [LEU] a:568 [A] 3.72 26.3
e:130 [SER] a:20 [C] 3.33 a:925 [G] 90.63
e:131 [ASN] a:10 [G] 4.37 a:26 [C] 65.44
e:131 [ASN] a:20 [C] 4.94 a:925 [G] 65.44
e:132 [THR] a:19 [C] 3.28 a:926 [G] 89.62
e:132 [THR] a:20 [C] 2.43 a:925 [G] 89.62
e:134 [ILE] a:19 [C] 4.85 a:926 [G] 5.77
e:134 [ILE] a:1089 [U] 3.32 5.77
e:134 [ILE] a:1090 [G] 4.82 5.77
e:135 [ASN] a:1089 [U] 3.88 89.75
e:138 [ARG] a:1089 [U] 3.31 46.44

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group101 6S0X_e_a e: 30s ribosomal protein s5, Staphylococcus aureus (natural) a: 16s ribosomal RNA, Staphylococcus aureus (natural) W8TUC9 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0X_e_a 7O7Y_Ab_A2 0.44 0.89 2.76 0.17 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like compare
6S0X_e_a 7RYG_e_a 0.59 0.97 1.64 0.5 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA compare
6S0X_e_a 7K00_E_A 0.57 0.96 2.44 0.47 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA compare
6S0X_e_a 7O7Z_Ab_A2 0.44 0.89 2.76 0.2 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like compare
4Y4O_1e_1a 6S0X_e_a 0.59 0.96 2.62 0.5 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA compare