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All interfaces > All interologs > Interface groups > group101 > 7K00_E_A

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7K00_E
7K00_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
E:19 [ASN] A:16 [A] 4.75 A:919 [A] 58.27
E:19 [ASN] A:17 [U] 3.27 A:918 [A] 58.27
E:20 [ARG] A:16 [A] 3.95 A:919 [A] 84.69
E:20 [ARG] A:17 [U] 4.37 A:918 [A] 84.69
E:21 [VAL] A:16 [A] 3.29 A:919 [A] 89.7
E:21 [VAL] A:17 [U] 4.16 A:918 [A] 89.7
E:21 [VAL] A:1080 [A] 3.5 A:1077 [G] 89.7
E:21 [VAL] A:1081 [A] 3.63 A:1076 [U] 89.7
E:22 [SER] A:15 [G] 3.01 A:920 [U] base:BB, sugar:SC 72.02
E:22 [SER] A:16 [A] 3.07 A:919 [A] sugar:SC, sugar:BB 72.02
E:22 [SER] A:1080 [A] 3.7 A:1077 [G] 72.02
E:22 [SER] A:1081 [A] 3.38 A:1076 [U] 72.02
E:23 [LYS] A:15 [G] 3.81 A:920 [U] 83.16
E:23 [LYS] A:921 [U] 3.63 A:1396 [A] sugar:SC 83.16
E:23 [LYS] A:922 [G] 4.53 A:1395 [C] 83.16
E:23 [LYS] A:1080 [A] 4.99 A:1077 [G] 83.16
E:23 [LYS] A:1081 [A] 3.43 A:1076 [U] 83.16
E:23 [LYS] A:1082 [A] 3.25 A:1075 [U] 83.16
E:24 [THR] A:15 [G] 3.65 A:920 [U] 83.24
E:24 [THR] A:921 [U] 2.31 A:1396 [A] sugar:BB, sugar:BB 83.24
E:24 [THR] A:922 [G] 3.07 A:1395 [C] 83.24
E:24 [THR] A:1396 [A] 3.93 A:921 [U] 83.24
E:24 [THR] A:1398 [A] 3.27 83.24
E:25 [VAL] A:921 [U] 4.52 A:1396 [A] 75.15
E:25 [VAL] A:922 [G] 3.39 A:1395 [C] 75.15
E:25 [VAL] A:923 [A] 4.95 A:1393 [U] 75.15
E:25 [VAL] A:1070 [U] 3.59 A:1105 [A] 75.15
E:25 [VAL] A:1398 [A] 3.13 base:BB 75.15
E:26 [LYS] A:922 [G] 3.47 A:1395 [C] 71.52
E:26 [LYS] A:923 [A] 3.18 A:1393 [U] 71.52
E:26 [LYS] A:924 [C] 4.61 A:1392 [G] 71.52
E:26 [LYS] A:1398 [A] 3.16 71.52
E:27 [GLY] A:1193 [G] 3.68 A:1063 [C] 85.56
E:27 [GLY] A:1194 [U] 3.13 A:1062 [U] 85.56
E:27 [GLY] A:1398 [A] 4.45 85.56
E:28 [GLY] A:1398 [A] 3.93 98.44
E:29 [ARG] A:15 [G] 2.98 A:920 [U] 74.1
E:29 [ARG] A:1396 [A] 2.67 A:921 [U] sugar:SC 74.1
E:29 [ARG] A:1397 [C] 2.46 74.1
E:30 [ILE] A:1070 [U] 4.76 A:1105 [A] 53.77
E:30 [ILE] A:1081 [A] 4.61 A:1076 [U] 53.77
E:31 [PHE] A:15 [G] 4.53 A:920 [U] 24.68
E:32 [SER] A:1081 [A] 3.64 A:1076 [U] 74.92
E:34 [THR] A:1080 [A] 3.66 A:1077 [G] 72.79
E:50 [TYR] A:1079 [G] 3.12 4.51
E:50 [TYR] A:1080 [A] 2.84 A:1077 [G] 4.51
E:52 [LYS] A:1080 [A] 2.7 A:1077 [G] 90.32
E:52 [LYS] A:1081 [A] 3.2 A:1076 [U] 90.32
E:54 [ARG] A:1070 [U] 2.91 A:1105 [A] 1.16
E:54 [ARG] A:1071 [C] 2.91 A:1104 [G] 1.16
E:62 [LYS] A:1072 [G] 3.1 A:1103 [C] 87.42
E:62 [LYS] A:1073 [U] 3.65 A:1102 [A] 87.42
E:65 [GLU] A:1073 [U] 4.7 A:1102 [A] 12.34
E:66 [LYS] A:1074 [G] 4.78 A:1083 [U] 15.61
E:69 [ARG] A:1074 [G] 3.3 A:1083 [U] 65.68
E:69 [ARG] A:1075 [U] 4.81 A:1082 [A] 65.68
E:86 [LYS] A:566 [G] 4.12 A:299 [G] 0.37
E:89 [HIS] A:1078 [U] 3.21 30.82
E:90 [THR] A:18 [C] 3.82 A:917 [G] 62.66
E:90 [THR] A:19 [A] 3.91 A:916 [U] 62.66
E:90 [THR] A:864 [A] 3.72 62.66
E:90 [THR] A:865 [A] 4.87 A:571 [U] 62.66
E:90 [THR] A:1078 [U] 3.68 62.66
E:91 [GLY] A:19 [A] 3.6 A:916 [U] 80.86
E:91 [GLY] A:20 [U] 4.73 80.86
E:91 [GLY] A:864 [A] 4.62 80.86
E:92 [SER] A:19 [A] 4.47 A:916 [U] 76.14
E:93 [ARG] A:560 [A] 3.81 35.61
E:95 [PHE] A:7 [A] 3.47 base/AA stacks 8.96
E:97 [GLN] A:6 [G] 4.12 55.52
E:97 [GLN] A:7 [A] 2.94 base:SC 55.52
E:98 [PRO] A:6 [G] 4.55 86.52
E:99 [ALA] A:6 [G] 3.62 81.44
E:100 [SER] A:5 [U] 3.53 base:SC 51.4
E:100 [SER] A:6 [G] 2.82 base:BB, base:SC 51.4
E:103 [THR] A:6 [G] 2.66 base:SC, base:SC 77.9
E:103 [THR] A:7 [A] 4.9 77.9
E:106 [ILE] A:7 [A] 4.19 65.49
E:106 [ILE] A:8 [A] 3.77 65.49
E:107 [ALA] A:8 [A] 3.01 86.8
E:108 [GLY] A:8 [A] 3.3 79.04
E:108 [GLY] A:9 [G] 3.88 A:25 [C] 79.04
E:112 [ARG] A:8 [A] 3.63 80.7
E:124 [LEU] A:6 [G] 3.73 41.4
E:124 [LEU] A:7 [A] 3.21 41.4
E:125 [ALA] A:7 [A] 3.08 66.12
E:125 [ALA] A:8 [A] 3.1 66.12
E:125 [ALA] A:9 [G] 4.61 A:25 [C] 66.12
E:126 [LYS] A:7 [A] 4.12 93.51
E:126 [LYS] A:8 [A] 3.81 93.51
E:126 [LYS] A:9 [G] 2.77 A:25 [C] 93.51
E:126 [LYS] A:558 [G] 3.84 A:26 [A] 93.51
E:126 [LYS] A:559 [A] 2.89 93.51
E:127 [ALA] A:9 [G] 2.88 A:25 [C] 59.48
E:127 [ALA] A:559 [A] 4.5 59.48
E:128 [TYR] A:7 [A] 3.12 13.35
E:128 [TYR] A:298 [A] 4.65 13.35
E:128 [TYR] A:560 [A] 3.55 base/AA stacks 13.35
E:129 [GLY] A:560 [A] 4.35 89.25
E:130 [SER] A:18 [C] 4.91 A:917 [G] 91.42
E:130 [SER] A:19 [A] 3.01 A:916 [U] 91.42
E:130 [SER] A:20 [U] 4.18 91.42
E:131 [THR] A:9 [G] 4.01 A:25 [C] 60.19
E:131 [THR] A:10 [A] 2.74 A:24 [U] 60.19
E:132 [ASN] A:17 [U] 4.93 A:918 [A] 92.86
E:132 [ASN] A:18 [C] 2.8 A:917 [G] 92.86
E:132 [ASN] A:19 [A] 3.55 A:916 [U] 92.86
E:134 [ILE] A:1078 [U] 3.46 23.05
E:134 [ILE] A:1079 [G] 4.06 23.05
E:135 [ASN] A:18 [C] 3.34 A:917 [G] 91.96
E:135 [ASN] A:19 [A] 3.16 A:916 [U] 91.96
E:135 [ASN] A:1078 [U] 3.17 base:SC, sugar:SC 91.96
E:138 [ARG] A:1078 [U] 3.42 50.88
E:138 [ARG] A:1079 [G] 3.82 50.88

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group101 7K00_E_A E: 30s ribosomal protein s5, Escherichia coli (natural) A: 16s rRNA, Escherichia coli (natural) P0A7W1 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0X_e_a 7K00_E_A 0.57 0.96 2.44 0.47 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA compare
7K00_E_A 7O7Z_Ab_A2 0.73 0.92 1.74 0.16 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like compare
7K00_E_A 7O7Y_Ab_A2 0.73 0.92 1.76 0.17 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like compare
7K00_E_A 7RYG_e_a 0.91 0.94 1.67 0.75 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA compare
4Y4O_1e_1a 7K00_E_A 0.83 0.98 0.91 0.44 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA compare