RNAprotDB

All interfaces > All interologs > Interface groups > group101 > 7O7Y_Ab_A2

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7O7Y_Ab
7O7Y_A2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Ab:110 [MET] A2:12 [U] 3.46 A2:1200 [A] 50.9
Ab:110 [MET] A2:13 [C] 4.56 A2:1199 [G] 50.9
Ab:111 [PRO] A2:11 [A] 4.09 A2:1201 [A] 65.86
Ab:111 [PRO] A2:12 [U] 4.57 A2:1200 [A] 65.86
Ab:112 [VAL] A2:11 [A] 3.65 A2:1201 [A] 86.3
Ab:112 [VAL] A2:12 [U] 4.41 A2:1200 [A] 86.3
Ab:112 [VAL] A2:1358 [A] 3.76 A2:1355 [G] 86.3
Ab:112 [VAL] A2:1359 [U] 3.36 A2:1354 [A] 86.3
Ab:113 [GLN] A2:10 [G] 2.36 A2:1202 [U] base:BB, sugar:SC 80.09
Ab:113 [GLN] A2:11 [A] 3.25 A2:1201 [A] sugar:BB 80.09
Ab:113 [GLN] A2:1358 [A] 3.79 A2:1355 [G] sugar:BB 80.09
Ab:113 [GLN] A2:1359 [U] 3.88 A2:1354 [A] 80.09
Ab:114 [LYS] A2:10 [G] 3.85 A2:1202 [U] 88.19
Ab:114 [LYS] A2:1203 [U] 3.33 A2:1698 [A] 88.19
Ab:114 [LYS] A2:1348 [PSU] 4.54 A2:1383 [A] 88.19
Ab:114 [LYS] A2:1359 [U] 3.53 A2:1354 [A] 88.19
Ab:114 [LYS] A2:1360 [U] 3.42 A2:1353 [G] 88.19
Ab:115 [GLN] A2:10 [G] 3.68 A2:1202 [U] base/AA stacks 83.19
Ab:115 [GLN] A2:1203 [U] 2.52 A2:1698 [A] sugar:BB 83.19
Ab:115 [GLN] A2:1204 [G] 3.13 A2:1697 [C] 83.19
Ab:115 [GLN] A2:1698 [A] 3.26 A2:1203 [U] base:SC 83.19
Ab:115 [GLN] A2:1700 [A] 3.49 base/AA stacks 83.19
Ab:116 [THR] A2:1203 [U] 4.77 A2:1698 [A] 87.4
Ab:116 [THR] A2:1204 [G] 3.19 A2:1697 [C] 87.4
Ab:116 [THR] A2:1487 [A] 4.26 A2:1341 [U] 87.4
Ab:116 [THR] A2:1700 [A] 3.0 base:BB 87.4
Ab:117 [ARG] A2:1204 [G] 3.78 A2:1697 [C] 67.87
Ab:117 [ARG] A2:1205 [A] 3.43 A2:1695 [U] 67.87
Ab:117 [ARG] A2:1342 [C] 3.92 A2:1486 [U] 67.87
Ab:117 [ARG] A2:1689 [C] 3.39 A2:1212 [G] 67.87
Ab:117 [ARG] A2:1690 [C] 4.56 A2:1211 [G] 67.87
Ab:117 [ARG] A2:1700 [A] 3.4 67.87
Ab:118 [ALA] A2:1487 [A] 3.33 A2:1341 [U] 88.12
Ab:118 [ALA] A2:1488 [A] 2.79 A2:1340 [U] sugar:BB 88.12
Ab:118 [ALA] A2:1700 [A] 4.89 88.12
Ab:119 [GLY] A2:1487 [A] 4.8 A2:1341 [U] 97.28
Ab:119 [GLY] A2:1488 [A] 4.91 A2:1340 [U] 97.28
Ab:119 [GLY] A2:1700 [A] 4.27 97.28
Ab:120 [GLN] A2:10 [G] 3.27 A2:1202 [U] 80.76
Ab:120 [GLN] A2:1488 [A] 4.9 A2:1340 [U] 80.76
Ab:120 [GLN] A2:1699 [C] 4.07 80.76
Ab:121 [ARG] A2:1359 [U] 3.43 A2:1354 [A] 72.13
Ab:121 [ARG] A2:1360 [U] 4.98 A2:1353 [G] 72.13
Ab:123 [ARG] A2:1349 [G] 4.11 A2:1382 [G] 60.07
Ab:123 [ARG] A2:1358 [A] 4.98 A2:1355 [G] 60.07
Ab:123 [ARG] A2:1359 [U] 2.93 A2:1354 [A] 60.07
Ab:125 [LYS] A2:1357 [G] 2.63 73.57
Ab:125 [LYS] A2:1358 [A] 3.32 A2:1355 [G] 73.57
Ab:142 [LYS] A2:1350 [G] 3.27 A2:1381 [C] 64.75
Ab:142 [LYS] A2:1351 [U] 3.75 A2:1380 [A] 64.75
Ab:143 [CYS] A2:1358 [A] 4.61 A2:1355 [G] 74.29
Ab:143 [CYS] A2:1359 [U] 4.33 A2:1354 [A] 74.29
Ab:145 [LYS] A2:1487 [A] 3.79 A2:1341 [U] 47.21
Ab:183 [LYS] A2:1156 [U] 3.31 34.85
Ab:184 [VAL] A2:1156 [U] 4.42 71.35
Ab:185 [THR] A2:1155 [U] 2.72 sugar:SC 7.81
Ab:185 [THR] A2:1156 [U] 2.36 7.81
Ab:187 [ARG] A2:1142 [G] 4.93 A2:1147 [C] 76.61
Ab:187 [ARG] A2:1143 [G] 2.55 76.61
Ab:187 [ARG] A2:1144 [A] 3.1 76.61
Ab:188 [CYS] A2:14 [C] 4.17 A2:1198 [G] 22.79
Ab:188 [CYS] A2:1356 [C] 3.38 22.79
Ab:189 [GLY] A2:13 [C] 4.7 A2:1199 [G] 75.26
Ab:189 [GLY] A2:14 [C] 3.96 A2:1198 [G] 75.26
Ab:189 [GLY] A2:1144 [A] 3.35 75.26
Ab:189 [GLY] A2:1145 [A] 3.98 A2:668 [U] 75.26
Ab:189 [GLY] A2:1356 [C] 3.67 75.26
Ab:190 [SER] A2:13 [C] 4.68 A2:1199 [G] 91.27
Ab:190 [SER] A2:14 [C] 3.06 A2:1198 [G] 91.27
Ab:190 [SER] A2:15 [U] 4.26 91.27
Ab:190 [SER] A2:1144 [A] 3.71 91.27
Ab:191 [VAL] A2:14 [C] 3.92 A2:1198 [G] 82.55
Ab:192 [LEU] A2:1155 [U] 3.59 17.13
Ab:194 [ARG] A2:1155 [U] 3.14 51.17
Ab:194 [ARG] A2:1156 [U] 2.96 51.17
Ab:194 [ARG] A2:1157 [U] 2.87 base:SC 51.17
Ab:196 [ILE] A2:2 [A] 3.55 44.28
Ab:202 [THR] A2:1 [U] 4.56 70.25
Ab:205 [VAL] A2:1 [U] 3.63 72.37
Ab:205 [VAL] A2:2 [A] 4.19 72.37
Ab:205 [VAL] A2:3 [C] 3.72 72.37
Ab:206 [SER] A2:3 [C] 3.19 82.7
Ab:207 [ALA] A2:3 [C] 3.73 58.76
Ab:207 [ALA] A2:4 [C] 3.51 A2:20 [G] 58.76
Ab:207 [ALA] A2:5 [U] 4.94 A2:19 [A] 58.76
Ab:208 [PRO] A2:4 [C] 4.06 A2:20 [G] 26.91
Ab:209 [VAL] A2:5 [U] 4.81 A2:19 [A] 45.65
Ab:223 [TYR] A2:1 [U] 4.71 44.77
Ab:223 [TYR] A2:2 [A] 3.46 base/AA stacks 44.77
Ab:224 [THR] A2:2 [A] 3.0 sugar:BB 56.54
Ab:224 [THR] A2:3 [C] 3.35 56.54
Ab:224 [THR] A2:4 [C] 4.72 A2:20 [G] 56.54
Ab:225 [SER] A2:2 [A] 4.91 59.22
Ab:225 [SER] A2:3 [C] 4.88 59.22
Ab:225 [SER] A2:4 [C] 4.44 A2:20 [G] 59.22
Ab:225 [SER] A2:1155 [U] 4.17 59.22
Ab:226 [ALA] A2:4 [C] 3.27 A2:20 [G] 61.0
Ab:227 [ARG] A2:15 [U] 4.27 1.2
Ab:227 [ARG] A2:657 [G] 4.61 1.2
Ab:227 [ARG] A2:1155 [U] 3.25 1.2
Ab:228 [GLY] A2:15 [U] 4.17 89.7
Ab:229 [CYS] A2:14 [C] 3.66 A2:1198 [G] 57.29
Ab:229 [CYS] A2:15 [U] 3.6 57.29
Ab:230 [THR] A2:4 [C] 3.69 A2:20 [G] 80.63
Ab:230 [THR] A2:5 [U] 2.57 A2:19 [A] 80.63
Ab:231 [ALA] A2:5 [U] 3.68 A2:19 [A] 61.53
Ab:231 [ALA] A2:6 [G] 3.56 A2:18 [C] 61.53
Ab:232 [THR] A2:13 [C] 3.24 A2:1199 [G] 74.98
Ab:232 [THR] A2:14 [C] 2.69 A2:1198 [G] 74.98
Ab:235 [ASN] A2:13 [C] 2.99 A2:1199 [G] 91.73
Ab:235 [ASN] A2:14 [C] 2.74 A2:1198 [G] 91.73
Ab:235 [ASN] A2:1356 [C] 2.77 base:SC, sugar:SC 91.73
Ab:236 [PHE] A2:4 [C] 3.9 A2:20 [G] 30.96
Ab:236 [PHE] A2:5 [U] 3.61 A2:19 [A] 30.96
Ab:238 [LYS] A2:1356 [C] 2.76 sugar:SC 27.58
Ab:238 [LYS] A2:1357 [G] 3.57 27.58
Ab:250 [TYR] A2:1156 [U] 3.65 33.56

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group101 7O7Y_Ab_A2 Ab: Ribosomal protein us5, Oryctolagus cuniculus (natural) A2: 18s rRNA, Oryctolagus cuniculus (natural) Ribosomal protein S5 domain 2-like & N-terminal region in 40S ribosomal protein rpS2 (S5p) & dsRNA-binding domain-like Eukaryotic small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0X_e_a 7O7Y_Ab_A2 0.44 0.89 2.76 0.17 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like compare
7K00_E_A 7O7Y_Ab_A2 0.73 0.92 1.76 0.17 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like compare
4Y4O_1e_1a 7O7Y_Ab_A2 0.67 0.93 1.93 0.17 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like compare