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All interfaces > All interologs > Interface groups > group101 > 7RYG_e_a

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7RYG_e
7RYG_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
e:18 [ASP] a:19 [U] 3.72 a:915 [A] 52.59
e:19 [ARG] a:18 [A] 4.55 a:916 [A] 87.35
e:19 [ARG] a:19 [U] 4.24 a:915 [A] 87.35
e:20 [VAL] a:18 [A] 3.26 a:916 [A] 86.78
e:20 [VAL] a:19 [U] 4.28 a:915 [A] 86.78
e:20 [VAL] a:1077 [A] 4.07 a:1074 [G] 86.78
e:20 [VAL] a:1078 [G] 4.48 a:1073 [C] 86.78
e:21 [ALA] a:17 [G] 3.22 a:917 [U] base:BB 70.0
e:21 [ALA] a:18 [A] 3.31 a:916 [A] sugar:BB 70.0
e:21 [ALA] a:1077 [A] 3.69 a:1074 [G] sugar:BB 70.0
e:21 [ALA] a:1078 [G] 3.49 a:1073 [C] 70.0
e:22 [LYS] a:17 [G] 3.71 a:917 [U] 80.92
e:22 [LYS] a:918 [U] 3.62 a:1393 [A] sugar:SC 80.92
e:22 [LYS] a:1078 [G] 3.39 a:1073 [C] 80.92
e:22 [LYS] a:1079 [A] 4.07 a:1072 [U] 80.92
e:23 [VAL] a:17 [G] 3.36 a:917 [U] 87.55
e:23 [VAL] a:918 [U] 2.5 a:1393 [A] sugar:BB 87.55
e:23 [VAL] a:919 [G] 3.3 a:1392 [C] 87.55
e:23 [VAL] a:1393 [A] 3.85 a:918 [U] 87.55
e:23 [VAL] a:1395 [A] 3.73 87.55
e:24 [VAL] a:918 [U] 4.75 a:1393 [A] 79.47
e:24 [VAL] a:919 [G] 4.02 a:1392 [C] 79.47
e:24 [VAL] a:1067 [U] 4.75 a:1102 [A] 79.47
e:24 [VAL] a:1395 [A] 3.93 base:BB 79.47
e:25 [LYS] a:919 [G] 4.29 a:1392 [C] 65.69
e:25 [LYS] a:920 [A] 3.07 a:1390 [U] 65.69
e:25 [LYS] a:921 [C] 3.88 a:1389 [G] 65.69
e:25 [LYS] a:1190 [G] 4.92 a:1060 [C] 65.69
e:25 [LYS] a:1395 [A] 4.82 65.69
e:26 [GLY] a:1190 [G] 4.93 a:1060 [C] 85.41
e:26 [GLY] a:1191 [U] 4.59 a:1059 [U] 85.41
e:26 [GLY] a:1395 [A] 4.02 85.41
e:27 [GLY] a:1395 [A] 4.24 92.51
e:28 [ARG] a:17 [G] 3.2 a:917 [U] 76.02
e:28 [ARG] a:1393 [A] 3.9 a:918 [U] 76.02
e:28 [ARG] a:1394 [C] 2.35 76.02
e:29 [ILE] a:1078 [G] 4.87 a:1073 [C] 50.78
e:31 [SER] a:1078 [G] 4.98 a:1073 [C] 76.26
e:33 [THR] a:1077 [A] 3.6 a:1074 [G] 76.9
e:49 [ARG] a:1076 [G] 3.48 26.27
e:49 [ARG] a:1077 [A] 3.39 a:1074 [G] 26.27
e:51 [LYS] a:1077 [A] 2.97 a:1074 [G] 90.0
e:51 [LYS] a:1078 [G] 3.18 a:1073 [C] base:SC 90.0
e:53 [ARG] a:1067 [U] 4.79 a:1102 [A] 0.0
e:53 [ARG] a:1068 [C] 2.71 a:1101 [G] 0.0
e:61 [LYS] a:1070 [U] 4.63 a:1099 [A] 87.08
e:68 [ARG] a:1071 [G] 4.32 a:1080 [U] 71.1
e:68 [ARG] a:1072 [U] 3.64 a:1079 [A] 71.1
e:87 [ARG] a:859 [C] 3.68 a:864 [G] 74.35
e:87 [ARG] a:860 [U] 2.65 74.35
e:88 [HIS] a:1075 [U] 3.57 39.17
e:89 [GLY] a:861 [A] 3.59 49.11
e:90 [ALA] a:21 [A] 3.64 a:913 [U] 76.12
e:90 [ALA] a:22 [U] 4.12 76.12
e:90 [ALA] a:861 [A] 4.21 76.12
e:91 [SER] a:21 [A] 4.86 a:913 [U] 84.55
e:92 [ARG] a:557 [U] 4.02 44.73
e:94 [TYR] a:9 [A] 3.85 1.75
e:96 [GLN] a:8 [G] 4.08 45.22
e:96 [GLN] a:9 [A] 3.06 base:SC 45.22
e:97 [PRO] a:8 [G] 4.72 81.41
e:98 [ALA] a:8 [G] 3.41 75.02
e:99 [SER] a:7 [U] 3.28 53.18
e:99 [SER] a:8 [G] 2.65 base:BB, base:SC, base:SC 53.18
e:102 [THR] a:8 [G] 2.76 base:SC, base:SC 72.62
e:102 [THR] a:9 [A] 4.73 72.62
e:105 [ILE] a:9 [A] 4.18 61.86
e:105 [ILE] a:10 [A] 3.57 61.86
e:106 [ALA] a:10 [A] 2.97 85.71
e:106 [ALA] a:11 [G] 4.57 a:27 [C] 85.71
e:107 [GLY] a:10 [A] 3.8 71.18
e:107 [GLY] a:11 [G] 3.82 a:27 [C] 71.18
e:110 [MET] a:11 [G] 4.0 a:27 [C] 57.35
e:111 [ARG] a:10 [A] 3.14 base:SC 67.03
e:123 [LEU] a:8 [G] 4.03 50.58
e:123 [LEU] a:9 [A] 3.07 50.58
e:124 [ALA] a:9 [A] 3.5 66.94
e:124 [ALA] a:10 [A] 3.28 66.94
e:124 [ALA] a:11 [G] 4.31 a:27 [C] 66.94
e:125 [LYS] a:9 [A] 4.76 92.56
e:125 [LYS] a:10 [A] 4.31 92.56
e:125 [LYS] a:11 [G] 4.25 a:27 [C] 92.56
e:125 [LYS] a:556 [A] 3.12 92.56
e:126 [CYS] a:11 [G] 3.67 a:27 [C] 55.95
e:127 [TYR] a:9 [A] 4.1 30.21
e:127 [TYR] a:294 [A] 4.47 30.21
e:127 [TYR] a:557 [U] 3.78 base/AA stacks 30.21
e:128 [GLY] a:557 [U] 4.85 89.82
e:129 [SER] a:21 [A] 2.81 a:913 [U] 90.34
e:129 [SER] a:22 [U] 3.93 90.34
e:130 [THR] a:11 [G] 4.31 a:27 [C] 64.55
e:130 [THR] a:12 [A] 3.66 a:26 [U] 64.55
e:131 [ASN] a:20 [C] 3.2 a:914 [G] 93.96
e:131 [ASN] a:21 [A] 3.5 a:913 [U] 93.96
e:131 [ASN] a:1075 [U] 4.76 93.96
e:133 [ALA] a:1075 [U] 4.29 36.77
e:134 [ASN] a:20 [C] 3.91 a:914 [G] 90.74
e:134 [ASN] a:21 [A] 3.34 a:913 [U] 90.74
e:134 [ASN] a:1075 [U] 3.64 90.74
e:137 [ASN] a:1075 [U] 4.94 53.74

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group101 7RYG_e_a e: 30s ribosomal protein s5, Acinetobacter baumannii (strain ab0057) (natural) a: 16s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) B7IA22 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0X_e_a 7RYG_e_a 0.59 0.97 1.64 0.5 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA compare
7K00_E_A 7RYG_e_a 0.91 0.94 1.67 0.75 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA compare
4Y4O_1e_1a 7RYG_e_a 0.81 0.92 2.08 0.5 Ribosomal protein S5 domain 2-like & dsRNA-binding domain-like Bacterial small subunit ribosomal RNA compare