RNAprotDB

All interfaces > All interologs > Interface groups > group102 > 4Y4O_1k_1a

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

4Y4O_1k
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1k:18 [ARG] 1a:708 [C] 4.27 1a:682 [G] 68.8
1k:20 [TYR] 1a:706 [A] 4.77 1a:684 [A] 60.56
1k:20 [TYR] 1a:707 [C] 3.42 1a:683 [G] 60.56
1k:20 [TYR] 1a:708 [C] 3.71 1a:682 [G] 60.56
1k:22 [HIS] 1a:690 [G] 4.42 1a:697 [U] 31.82
1k:22 [HIS] 1a:706 [A] 3.83 1a:684 [A] 31.82
1k:22 [HIS] 1a:707 [C] 4.56 1a:683 [G] 31.82
1k:24 [SER] 1a:690 [G] 4.22 1a:697 [U] 78.15
1k:24 [SER] 1a:691 [G] 4.57 1a:696 [A] 78.15
1k:26 [ASN] 1a:690 [G] 4.8 1a:697 [U] 93.22
1k:26 [ASN] 1a:691 [G] 2.93 1a:696 [A] 93.22
1k:26 [ASN] 1a:692 [U] 2.93 93.22
1k:27 [ASN] 1a:688 [G] 4.98 1a:699 [C] 99.0
1k:27 [ASN] 1a:689 [C] 2.66 1a:698 [G] 99.0
1k:27 [ASN] 1a:690 [G] 2.84 1a:697 [U] 99.0
1k:29 [ILE] 1a:689 [C] 3.65 1a:698 [G] 78.9
1k:29 [ILE] 1a:690 [G] 4.08 1a:697 [U] 78.9
1k:29 [ILE] 1a:705 [U] 3.69 1a:685 [G] 78.9
1k:29 [ILE] 1a:706 [A] 3.69 1a:684 [A] 78.9
1k:31 [THR] 1a:706 [A] 2.95 1a:684 [A] 72.69
1k:31 [THR] 1a:707 [C] 3.91 1a:683 [G] 72.69
1k:33 [THR] 1a:707 [C] 3.65 1a:683 [G] 79.15
1k:36 [ASP] 1a:708 [C] 3.57 1a:682 [G] sugar:BB 35.95
1k:37 [GLY] 1a:683 [G] 4.26 1a:707 [C] 78.56
1k:37 [GLY] 1a:707 [C] 2.72 1a:683 [G] sugar:BB 78.56
1k:37 [GLY] 1a:708 [C] 3.43 1a:682 [G] 78.56
1k:38 [ASN] 1a:683 [G] 3.09 1a:707 [C] base:SC 49.61
1k:38 [ASN] 1a:684 [A] 3.59 1a:706 [A] 49.61
1k:38 [ASN] 1a:707 [C] 4.59 1a:683 [G] 49.61
1k:38 [ASN] 1a:708 [C] 4.53 1a:682 [G] 49.61
1k:39 [PRO] 1a:683 [G] 4.24 1a:707 [C] 56.66
1k:39 [PRO] 1a:684 [A] 2.51 1a:706 [A] sugar:BB 56.66
1k:39 [PRO] 1a:685 [G] 3.19 1a:705 [U] 56.66
1k:39 [PRO] 1a:706 [A] 4.03 1a:684 [A] 56.66
1k:39 [PRO] 1a:707 [C] 3.08 1a:683 [G] 56.66
1k:40 [ILE] 1a:684 [A] 4.68 1a:706 [A] 45.62
1k:40 [ILE] 1a:685 [G] 3.8 1a:705 [U] 45.62
1k:40 [ILE] 1a:686 [U] 4.76 1a:704 [A] 45.62
1k:41 [THR] 1a:685 [G] 4.8 1a:705 [U] 6.33
1k:42 [TRP] 1a:685 [G] 3.72 1a:705 [U] 0.08
1k:42 [TRP] 1a:686 [U] 2.81 1a:704 [A] sugar:SC 0.08
1k:42 [TRP] 1a:687 [A] 3.6 1a:703 [G] 0.08
1k:42 [TRP] 1a:688 [G] 3.52 1a:699 [C] 0.08
1k:42 [TRP] 1a:704 [A] 3.13 1a:686 [U] 0.08
1k:42 [TRP] 1a:705 [U] 3.97 1a:685 [G] 0.08
1k:42 [TRP] 1a:706 [A] 4.46 1a:684 [A] 0.08
1k:44 [SER] 1a:688 [G] 3.21 1a:699 [C] 98.04
1k:44 [SER] 1a:689 [C] 2.57 1a:698 [G] 98.04
1k:45 [GLY] 1a:689 [C] 3.77 1a:698 [G] 52.84
1k:46 [GLY] 1a:688 [G] 3.39 1a:699 [C] 88.21
1k:46 [GLY] 1a:689 [C] 2.77 1a:698 [G] 88.21
1k:47 [VAL] 1a:687 [A] 4.39 1a:703 [G] 48.98
1k:47 [VAL] 1a:688 [G] 3.6 1a:699 [C] 48.98
1k:47 [VAL] 1a:689 [C] 4.52 1a:698 [G] 48.98
1k:50 [TYR] 1a:689 [C] 4.92 1a:698 [G] 67.89
1k:51 [LYS] 1a:691 [G] 4.82 1a:696 [A] 79.47
1k:51 [LYS] 1a:695 [A] 4.22 79.47
1k:52 [GLY] 1a:691 [G] 3.34 1a:696 [A] 68.85
1k:52 [GLY] 1a:692 [U] 3.15 68.85
1k:52 [GLY] 1a:695 [A] 3.36 68.85
1k:53 [SER] 1a:691 [G] 4.47 1a:696 [A] 54.87
1k:53 [SER] 1a:692 [U] 2.94 base:BB 54.87
1k:53 [SER] 1a:694 [A] 3.04 54.87
1k:53 [SER] 1a:695 [A] 3.17 54.87
1k:55 [LYS] 1a:689 [C] 2.96 1a:698 [G] 81.85
1k:55 [LYS] 1a:690 [G] 3.32 1a:697 [U] base:SC 81.85
1k:55 [LYS] 1a:691 [G] 3.28 1a:696 [A] 81.85
1k:71 [LYS] 1a:687 [A] 4.04 1a:703 [G] 33.7
1k:75 [TYR] 1a:686 [U] 4.03 1a:704 [A] 0.0
1k:85 [ARG] 1a:706 [A] 4.88 1a:684 [A] 59.21
1k:85 [ARG] 1a:707 [C] 2.51 1a:683 [G] 59.21
1k:85 [ARG] 1a:708 [C] 2.81 1a:682 [G] 59.21
1k:111 [ASP] 1a:708 [C] 4.9 1a:682 [G] 14.98
1k:113 [PRO] 1a:676 [A] 3.77 1a:714 [G] 37.76
1k:113 [PRO] 1a:677 [U] 4.3 1a:713 [G] 37.76
1k:114 [VAL] 1a:675 [A] 2.58 1a:715 [A] sugar:BB 51.22
1k:114 [VAL] 1a:676 [A] 3.99 1a:714 [G] 51.22
1k:114 [VAL] 1a:718 [G] 4.97 51.22
1k:115 [PRO] 1a:675 [A] 3.72 1a:715 [A] 75.47
1k:115 [PRO] 1a:676 [A] 3.6 1a:714 [G] 75.47
1k:115 [PRO] 1a:718 [G] 3.96 75.47
1k:116 [HIS] 1a:674 [G] 3.52 1a:716 [A] base:BB 72.05
1k:116 [HIS] 1a:675 [A] 2.85 1a:715 [A] base:BB 72.05
1k:116 [HIS] 1a:716 [A] 4.33 1a:674 [G] 72.05
1k:116 [HIS] 1a:717 [C] 3.61 1a:673 [G] 72.05
1k:116 [HIS] 1a:718 [G] 3.32 base/AA stacks 72.05
1k:117 [ASN] 1a:675 [A] 4.27 1a:715 [A] 92.11
1k:117 [ASN] 1a:716 [A] 2.9 1a:674 [G] base:BB, sugar:BB 92.11
1k:117 [ASN] 1a:717 [C] 3.73 1a:673 [G] 92.11
1k:117 [ASN] 1a:718 [G] 3.81 92.11
1k:118 [GLY] 1a:675 [A] 3.66 1a:715 [A] 91.41
1k:118 [GLY] 1a:676 [A] 4.46 1a:714 [G] 91.41
1k:118 [GLY] 1a:715 [A] 4.27 1a:675 [A] 91.41
1k:118 [GLY] 1a:716 [A] 3.55 1a:674 [G] 91.41
1k:119 [CYS] 1a:676 [A] 3.5 1a:714 [G] 77.33
1k:119 [CYS] 1a:677 [U] 3.28 1a:713 [G] 77.33
1k:119 [CYS] 1a:714 [G] 3.51 1a:676 [A] 77.33
1k:119 [CYS] 1a:715 [A] 4.69 1a:675 [A] 77.33
1k:119 [CYS] 1a:777 [A] 3.77 77.33
1k:119 [CYS] 1a:778 [G] 3.42 1a:804 [U] 77.33
1k:120 [ARG] 1a:778 [G] 2.52 1a:804 [U] sugar:BB 96.88
1k:120 [ARG] 1a:779 [C] 3.28 1a:803 [G] 96.88
1k:120 [ARG] 1a:1524 [C] 2.95 1a:1511 [G] 96.88
1k:120 [ARG] 1a:1525 [G] 2.43 1a:1510 [U] 96.88
1k:121 [PRO] 1a:778 [G] 4.65 1a:804 [U] 61.53
1k:121 [PRO] 1a:779 [C] 3.72 1a:803 [G] 61.53
1k:122 [LYS] 1a:779 [C] 3.63 1a:803 [G] 48.13
1k:122 [LYS] 1a:780 [A] 3.97 1a:802 [A] 48.13
1k:122 [LYS] 1a:798 [G] 3.34 1a:784 [C] 48.13
1k:122 [LYS] 1a:799 [G] 4.05 1a:783 [C] 48.13
1k:123 [LYS] 1a:779 [C] 3.96 1a:803 [G] 91.18
1k:123 [LYS] 1a:780 [A] 3.05 1a:802 [A] 91.18
1k:123 [LYS] 1a:795 [C] 4.42 1a:788 [U] 91.18
1k:123 [LYS] 1a:796 [C] 3.33 1a:786 [G] 91.18
1k:123 [LYS] 1a:1522 [U] 3.84 1a:1513 [A] 91.18
1k:123 [LYS] 1a:1523 [G] 2.85 1a:1512 [U] 91.18
1k:124 [LYS] 1a:692 [U] 3.4 44.88
1k:124 [LYS] 1a:797 [C] 3.43 1a:785 [G] 44.88
1k:126 [ARG] 1a:1524 [C] 4.26 1a:1511 [G] 98.77
1k:126 [ARG] 1a:1525 [G] 3.56 1a:1510 [U] 98.77

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group102 4Y4O_1k_1a 1k: 30s ribosomal protein s11, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) P80376 Ribonuclease H-like Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1k_1a 4YBB_AK_AA 0.62 0.96 3.51 0.4 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 6S0X_k_a 0.73 0.95 2.43 0.62 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 7O7Y_An_A2 0.80 0.93 2.71 0.26 Ribonuclease H-like compare
4Y4O_1k_1a 7RYG_k_a 0.83 0.92 2.81 0.62 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 7K00_K_A 0.84 0.98 1.34 0.63 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare