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All interfaces > All interologs > Interface groups > group102 > 4Y4O_1k_1a vs 4YBB_AK_AA

Interface analysis


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Common contacts -

4Y4O_1k
4Y4O_1a
4YBB_AK
4YBB_AA
Conserved?
1k:20 [TYR] 1a:706 [A] AK:22 [HIS] AA:706 [A] ✔
1k:20 [TYR] 1a:707 [C] AK:22 [HIS] AA:707 [U] ✔
1k:20 [TYR] 1a:708 [C] AK:22 [HIS] AA:708 [C] ✔
1k:45 [GLY] 1a:689 [C] AK:46 [THR] AA:689 [C] ✔
1k:39 [PRO] 1a:683 [G] AK:40 [ASN] AA:683 [G] ✔
1k:39 [PRO] 1a:684 [A] AK:40 [ASN] AA:684 [U] ✔
1k:39 [PRO] 1a:707 [C] AK:40 [ASN] AA:707 [U] ✔
1k:41 [THR] 1a:685 [G] AK:42 [LEU] AA:685 [G] ✔
1k:46 [GLY] 1a:689 [C] AK:47 [ALA] AA:689 [C] ✔
1k:52 [GLY] 1a:691 [G] AK:54 [GLY] AA:691 [G] ✔
1k:52 [GLY] 1a:692 [U] AK:54 [GLY] AA:692 [U] ✔
1k:52 [GLY] 1a:695 [A] AK:54 [GLY] AA:695 [A] ✔
1k:114 [VAL] 1a:675 [A] AK:116 [ILE] AA:675 [A] ✔
1k:114 [VAL] 1a:676 [A] AK:116 [ILE] AA:676 [A] ✔
1k:114 [VAL] 1a:718 [G] AK:116 [ILE] AA:718 [A] ✔
1k:47 [VAL] 1a:688 [G] AK:48 [GLY] AA:688 [G] ✔
1k:47 [VAL] 1a:689 [C] AK:48 [GLY] AA:689 [C] ✔
1k:118 [GLY] 1a:675 [A] AK:120 [GLY] AA:675 [A] ✔
1k:118 [GLY] 1a:676 [A] AK:120 [GLY] AA:676 [A] ✔
1k:118 [GLY] 1a:715 [A] AK:120 [GLY] AA:715 [A] ✔
1k:118 [GLY] 1a:716 [A] AK:120 [GLY] AA:716 [A] ✔
1k:55 [LYS] 1a:689 [C] AK:57 [LYS] AA:689 [C] ✔
1k:55 [LYS] 1a:690 [G] AK:57 [LYS] AA:690 [G] ✔
1k:55 [LYS] 1a:691 [G] AK:57 [LYS] AA:691 [G] ✔
1k:116 [HIS] 1a:674 [G] AK:118 [HIS] AA:674 [G] ✔
1k:116 [HIS] 1a:675 [A] AK:118 [HIS] AA:675 [A] ✔
1k:116 [HIS] 1a:716 [A] AK:118 [HIS] AA:716 [A] ✔
1k:116 [HIS] 1a:717 [C] AK:118 [HIS] AA:717 [U] ✔
1k:116 [HIS] 1a:718 [G] AK:118 [HIS] AA:718 [A] ✔
1k:26 [ASN] 1a:691 [G] AK:28 [ASN] AA:691 [G] ✔
1k:26 [ASN] 1a:692 [U] AK:28 [ASN] AA:692 [U] ✔
1k:53 [SER] 1a:694 [A] AK:55 [SER] AA:694 [A] ✔
1k:53 [SER] 1a:695 [A] AK:55 [SER] AA:695 [A] ✔
1k:40 [ILE] 1a:684 [A] AK:41 [ALA] AA:684 [U] ✔
1k:40 [ILE] 1a:685 [G] AK:41 [ALA] AA:685 [G] ✔
1k:85 [ARG] 1a:707 [C] AK:87 [LYS] AA:707 [U] ✔
1k:85 [ARG] 1a:708 [C] AK:87 [LYS] AA:708 [C] ✔
1k:37 [GLY] 1a:708 [C] AK:38 [GLN] AA:708 [C] ✔
1k:122 [LYS] 1a:779 [C] AK:124 [PRO] AA:779 [C] ✔
1k:122 [LYS] 1a:780 [A] AK:124 [PRO] AA:780 [A] ✔
1k:115 [PRO] 1a:675 [A] AK:117 [PRO] AA:675 [A] ✔
1k:115 [PRO] 1a:676 [A] AK:117 [PRO] AA:676 [A] ✔
1k:115 [PRO] 1a:718 [G] AK:117 [PRO] AA:718 [A] ✔
1k:120 [ARG] 1a:778 [G] AK:122 [ARG] AA:778 [G] ✔
1k:120 [ARG] 1a:779 [C] AK:122 [ARG] AA:779 [C] ✔
1k:120 [ARG] 1a:1524 [C] AK:122 [ARG] AA:1524 [C] ✔
1k:120 [ARG] 1a:1525 [G] AK:122 [ARG] AA:1525 [G] ✔
1k:117 [ASN] 1a:675 [A] AK:119 [ASN] AA:675 [A] ✔
1k:117 [ASN] 1a:716 [A] AK:119 [ASN] AA:716 [A] ✔
1k:117 [ASN] 1a:717 [C] AK:119 [ASN] AA:717 [U] ✔
1k:117 [ASN] 1a:718 [G] AK:119 [ASN] AA:718 [A] ✔
1k:24 [SER] 1a:690 [G] AK:26 [SER] AA:690 [G] ✔
1k:24 [SER] 1a:691 [G] AK:26 [SER] AA:691 [G] ✔
1k:22 [HIS] 1a:690 [G] AK:24 [HIS] AA:690 [G] ✔
1k:22 [HIS] 1a:706 [A] AK:24 [HIS] AA:706 [A] ✔
1k:22 [HIS] 1a:707 [C] AK:24 [HIS] AA:707 [U] ✔
1k:38 [ASN] 1a:683 [G] AK:39 [GLY] AA:683 [G] ✔
1k:38 [ASN] 1a:684 [A] AK:39 [GLY] AA:684 [U] ✔
1k:38 [ASN] 1a:707 [C] AK:39 [GLY] AA:707 [U] ✔
1k:38 [ASN] 1a:708 [C] AK:39 [GLY] AA:708 [C] ✔
1k:113 [PRO] 1a:676 [A] AK:115 [PRO] AA:676 [A] ✔
1k:113 [PRO] 1a:677 [U] AK:115 [PRO] AA:677 [U] ✔
1k:123 [LYS] 1a:779 [C] AK:125 [LYS] AA:779 [C] ✔
1k:123 [LYS] 1a:780 [A] AK:125 [LYS] AA:780 [A] ✔
1k:123 [LYS] 1a:1523 [G] AK:125 [LYS] AA:1523 [G] ✔
1k:119 [CYS] 1a:676 [A] AK:121 [CYS] AA:676 [A] ✔
1k:119 [CYS] 1a:677 [U] AK:121 [CYS] AA:677 [U] ✔
1k:119 [CYS] 1a:714 [G] AK:121 [CYS] AA:714 [G] ✔
1k:119 [CYS] 1a:777 [A] AK:121 [CYS] AA:777 [A] ✔
1k:119 [CYS] 1a:778 [G] AK:121 [CYS] AA:778 [G] ✔
1k:51 [LYS] 1a:691 [G] AK:53 [ARG] AA:691 [G] ✔
1k:51 [LYS] 1a:695 [A] AK:53 [ARG] AA:695 [A] ✔
1k:42 [TRP] 1a:685 [G] AK:43 [GLY] AA:685 [G] ✔
1k:121 [PRO] 1a:778 [G] AK:123 [PRO] AA:778 [G] ✔
1k:121 [PRO] 1a:779 [C] AK:123 [PRO] AA:779 [C] ✔
1k:75 [TYR] 1a:686 [U] AK:77 [TYR] AA:686 [U] ❌ 4YBB_AK_AA
1k:39 [PRO] 1a:685 [G] AK:40 [ASN] AA:685 [G] ❌ 4YBB_AK_AA
1k:39 [PRO] 1a:706 [A] AK:40 [ASN] AA:706 [A] ❌ 4YBB_AK_AA
1k:46 [GLY] 1a:688 [G] AK:47 [ALA] AA:688 [G] ❌ 4YBB_AK_AA
1k:124 [LYS] 1a:692 [U] AK:126 [LYS] AA:692 [U] ❌ 4YBB_AK_AA
1k:124 [LYS] 1a:797 [C] AK:126 [LYS] AA:797 [C] ❌ 4YBB_AK_AA
1k:47 [VAL] 1a:687 [A] AK:48 [GLY] AA:687 [A] ❌ 4YBB_AK_AA
1k:26 [ASN] 1a:690 [G] AK:28 [ASN] AA:690 [G] ❌ 4YBB_AK_AA
1k:53 [SER] 1a:691 [G] AK:55 [SER] AA:691 [G] ❌ 4YBB_AK_AA
1k:53 [SER] 1a:692 [U] AK:55 [SER] AA:692 [U] ❌ 4YBB_AK_AA
1k:40 [ILE] 1a:686 [U] AK:41 [ALA] AA:686 [U] ❌ 4YBB_AK_AA
1k:85 [ARG] 1a:706 [A] AK:87 [LYS] AA:706 [A] ❌ 4YBB_AK_AA
1k:37 [GLY] 1a:683 [G] AK:38 [GLN] AA:683 [G] ❌ 4YBB_AK_AA
1k:37 [GLY] 1a:707 [C] AK:38 [GLN] AA:707 [U] ❌ 4YBB_AK_AA
1k:123 [LYS] 1a:795 [C] AK:125 [LYS] AA:795 [C] ❌ 4YBB_AK_AA
1k:123 [LYS] 1a:796 [C] AK:125 [LYS] AA:796 [C] ❌ 4YBB_AK_AA
1k:123 [LYS] 1a:1522 [U] AK:125 [LYS] AA:1522 [U] ❌ 4YBB_AK_AA
1k:119 [CYS] 1a:715 [A] AK:121 [CYS] AA:715 [A] ❌ 4YBB_AK_AA
1k:42 [TRP] 1a:686 [U] AK:43 [GLY] AA:686 [U] ❌ 4YBB_AK_AA
1k:42 [TRP] 1a:687 [A] AK:43 [GLY] AA:687 [A] ❌ 4YBB_AK_AA
1k:42 [TRP] 1a:688 [G] AK:43 [GLY] AA:688 [G] ❌ 4YBB_AK_AA
1k:42 [TRP] 1a:704 [A] AK:43 [GLY] AA:704 [A] ❌ 4YBB_AK_AA
1k:42 [TRP] 1a:705 [U] AK:43 [GLY] AA:705 [G] ❌ 4YBB_AK_AA
1k:42 [TRP] 1a:706 [A] AK:43 [GLY] AA:706 [A] ❌ 4YBB_AK_AA
1k:123 [LYS] 1a:1524 [C] AK:125 [LYS] AA:1524 [C] ❌ 4Y4O_1k_1a
1k:124 [LYS] 1a:796 [C] AK:126 [LYS] AA:796 [C] ❌ 4Y4O_1k_1a
1k:40 [ILE] 1a:706 [A] AK:41 [ALA] AA:706 [A] ❌ 4Y4O_1k_1a
1k:40 [ILE] 1a:683 [G] AK:41 [ALA] AA:683 [G] ❌ 4Y4O_1k_1a
1k:40 [ILE] 1a:707 [C] AK:41 [ALA] AA:707 [U] ❌ 4Y4O_1k_1a
1k:41 [THR] 1a:684 [A] AK:42 [LEU] AA:684 [U] ❌ 4Y4O_1k_1a
1k:45 [GLY] 1a:688 [G] AK:46 [THR] AA:688 [G] ❌ 4Y4O_1k_1a
1k:45 [GLY] 1a:705 [U] AK:46 [THR] AA:705 [G] ❌ 4Y4O_1k_1a
1k:51 [LYS] 1a:689 [C] AK:53 [ARG] AA:689 [C] ❌ 4Y4O_1k_1a
1k:51 [LYS] 1a:690 [G] AK:53 [ARG] AA:690 [G] ❌ 4Y4O_1k_1a
1k:52 [GLY] 1a:694 [A] AK:54 [GLY] AA:694 [A] ❌ 4Y4O_1k_1a
1k:55 [LYS] 1a:692 [U] AK:57 [LYS] AA:692 [U] ❌ 4Y4O_1k_1a
1k:75 [TYR] 1a:685 [G] AK:77 [TYR] AA:685 [G] ❌ 4Y4O_1k_1a
1k:122 [LYS] 1a:798 [G] AK:124 [PRO] AA:798 [U] ❌ 4YBB_AA:798 no longer at interface
1k:122 [LYS] 1a:799 [G] AK:124 [PRO] AA:799 [G] ❌ 4YBB_AA:799 no longer at interface
1k:31 [THR] 1a:706 [A] AK:34 [ILE] AA:706 [A] ❌ 4YBB_AK:34 no longer at interface
1k:31 [THR] 1a:707 [C] AK:34 [ILE] AA:707 [U] ❌ 4YBB_AK:34 no longer at interface
1k:18 [ARG] 1a:708 [C] AK:20 [VAL] AA:708 [C] ❌ 4YBB_AK:20 no longer at interface
1k:71 [LYS] 1a:687 [A] AK:73 [ALA] AA:687 [A] ❌ 4YBB_AK:73 no longer at interface
1k:111 [ASP] 1a:708 [C] AK:113 [VAL] AA:708 [C] ❌ 4YBB_AK:113 no longer at interface
1k:50 [TYR] 1a:689 [C] AK:52 [PHE] AA:689 [C] ❌ 4YBB_AK:52 no longer at interface
1k:27 [ASN] 1a:688 [G] AK:30 [THR] AA:688 [G] ❌ 4YBB_AK:30 no longer at interface
1k:27 [ASN] 1a:689 [C] AK:30 [THR] AA:689 [C] ❌ 4YBB_AK:30 no longer at interface
1k:27 [ASN] 1a:690 [G] AK:30 [THR] AA:690 [G] ❌ 4YBB_AK:30 no longer at interface
1k:44 [SER] 1a:688 [G] AK:45 [ALA] AA:688 [G] ❌ 4YBB_AK:45 no longer at interface
1k:44 [SER] 1a:689 [C] AK:45 [ALA] AA:689 [C] ❌ 4YBB_AK:45 no longer at interface
1k:33 [THR] 1a:707 [C] AK:36 [ASP] AA:707 [U] ❌ 4YBB_AK:36 no longer at interface
1k:29 [ILE] 1a:689 [C] AK:32 [VAL] AA:689 [C] ❌ 4YBB_AK:32 no longer at interface
1k:29 [ILE] 1a:690 [G] AK:32 [VAL] AA:690 [G] ❌ 4YBB_AK:32 no longer at interface
1k:29 [ILE] 1a:705 [U] AK:32 [VAL] AA:705 [G] ❌ 4YBB_AK:32 no longer at interface
1k:29 [ILE] 1a:706 [A] AK:32 [VAL] AA:706 [A] ❌ 4YBB_AK:32 no longer at interface
1k:28 [THR] 1a:706 [A] AK:31 [ILE] AA:706 [A] ❌ 4Y4O_1k:28 no longer at interface
1k:28 [THR] 1a:689 [C] AK:31 [ILE] AA:689 [C] ❌ 4Y4O_1k:28 no longer at interface
1k:28 [THR] 1a:705 [U] AK:31 [ILE] AA:705 [G] ❌ 4Y4O_1k:28 no longer at interface
1k:28 [THR] 1a:690 [G] AK:31 [ILE] AA:690 [G] ❌ 4Y4O_1k:28 no longer at interface
1k:30 [VAL] 1a:707 [C] AK:33 [THR] AA:707 [U] ❌ 4Y4O_1k:30 no longer at interface
1k:30 [VAL] 1a:706 [A] AK:33 [THR] AA:706 [A] ❌ 4Y4O_1k:30 no longer at interface
1k:32 [ILE] 1a:707 [C] AK:35 [THR] AA:707 [U] ❌ 4Y4O_1k:32 no longer at interface
1k:43 [SER] 1a:686 [U] AK:44 [TRP] AA:686 [U] ❌ 4Y4O_1k:43 no longer at interface
1k:43 [SER] 1a:685 [G] AK:44 [TRP] AA:685 [G] ❌ 4Y4O_1k:43 no longer at interface
1k:43 [SER] 1a:704 [A] AK:44 [TRP] AA:704 [A] ❌ 4Y4O_1k:43 no longer at interface
1k:43 [SER] 1a:688 [G] AK:44 [TRP] AA:688 [G] ❌ 4Y4O_1k:43 no longer at interface
1k:43 [SER] 1a:687 [A] AK:44 [TRP] AA:687 [A] ❌ 4Y4O_1k:43 no longer at interface
1k:43 [SER] 1a:705 [U] AK:44 [TRP] AA:705 [G] ❌ 4Y4O_1k:43 no longer at interface
1k:48 [ILE] 1a:689 [C] AK:49 [GLY] AA:689 [C] ❌ 4Y4O_1k:48 no longer at interface
1k:48 [ILE] 1a:688 [G] AK:49 [GLY] AA:688 [G] ❌ 4Y4O_1k:48 no longer at interface
1k:83 [ILE] 1a:708 [C] AK:85 [MET] AA:708 [C] ❌ 4Y4O_1k:83 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like Bacterial small subunit ribosomal RNA 0.96 3.51 0.40 0.92 0.96 0.74 0.95 0.62 0.49 0.26 0.48


Other pairs involving 4Y4O_1k_1a or 4YBB_AK_AA

Total number of entries: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4YBB_AK_AA 7K00_K_A 0.74 0.98 2.98 0.79 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4YBB_AK_AA 7O7Y_An_A2 0.59 0.9 4.01 0.21 Ribonuclease H-like compare
4YBB_AK_AA 7RYG_k_a 0.92 0.97 1.43 0.97 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4YBB_AK_AA 6S0X_k_a 0.38 0.96 4.28 0.32 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 4YBB_AK_AA 0.62 0.96 3.51 0.4 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 6S0X_k_a 0.73 0.95 2.43 0.62 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 7O7Y_An_A2 0.80 0.93 2.71 0.26 Ribonuclease H-like compare
4Y4O_1k_1a 7K00_K_A 0.84 0.98 1.34 0.63 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 7RYG_k_a 0.83 0.92 2.81 0.62 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare