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All interfaces > All interologs > Interface groups > group102 > 4Y4O_1k_1a vs 6S0X_k_a

Interface analysis


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Common contacts -

4Y4O_1k
4Y4O_1a
6S0X_k
6S0X_a
Conserved?
1k:20 [TYR] 1a:707 [C] k:22 [HIS] a:715 [U] ✔
1k:20 [TYR] 1a:708 [C] k:22 [HIS] a:716 [A] ✔
1k:45 [GLY] 1a:689 [C] k:47 [ALA] a:697 [C] ✔
1k:39 [PRO] 1a:683 [G] k:41 [ALA] a:691 [G] ✔
1k:39 [PRO] 1a:684 [A] k:41 [ALA] a:692 [U] ✔
1k:39 [PRO] 1a:707 [C] k:41 [ALA] a:715 [U] ✔
1k:36 [ASP] 1a:708 [C] k:38 [PHE] a:716 [A] ✔
1k:46 [GLY] 1a:688 [G] k:48 [GLY] a:696 [G] ✔
1k:46 [GLY] 1a:689 [C] k:48 [GLY] a:697 [C] ✔
1k:31 [THR] 1a:706 [A] k:33 [THR] a:714 [A] ✔
1k:31 [THR] 1a:707 [C] k:33 [THR] a:715 [U] ✔
1k:52 [GLY] 1a:691 [G] k:54 [GLY] a:699 [G] ✔
1k:52 [GLY] 1a:692 [U] k:54 [GLY] a:700 [U] ✔
1k:52 [GLY] 1a:695 [A] k:54 [GLY] a:703 [A] ✔
1k:114 [VAL] 1a:675 [A] k:116 [VAL] a:683 [A] ✔
1k:114 [VAL] 1a:718 [G] k:116 [VAL] a:726 [A] ✔
1k:47 [VAL] 1a:688 [G] k:49 [ALA] a:696 [G] ✔
1k:47 [VAL] 1a:689 [C] k:49 [ALA] a:697 [C] ✔
1k:118 [GLY] 1a:675 [A] k:120 [GLY] a:683 [A] ✔
1k:118 [GLY] 1a:676 [A] k:120 [GLY] a:684 [A] ✔
1k:118 [GLY] 1a:715 [A] k:120 [GLY] a:723 [A] ✔
1k:118 [GLY] 1a:716 [A] k:120 [GLY] a:724 [A] ✔
1k:55 [LYS] 1a:689 [C] k:57 [LYS] a:697 [C] ✔
1k:55 [LYS] 1a:690 [G] k:57 [LYS] a:698 [G] ✔
1k:55 [LYS] 1a:691 [G] k:57 [LYS] a:699 [G] ✔
1k:116 [HIS] 1a:674 [G] k:118 [HIS] a:682 [G] ✔
1k:116 [HIS] 1a:675 [A] k:118 [HIS] a:683 [A] ✔
1k:116 [HIS] 1a:716 [A] k:118 [HIS] a:724 [A] ✔
1k:116 [HIS] 1a:717 [C] k:118 [HIS] a:725 [C] ✔
1k:116 [HIS] 1a:718 [G] k:118 [HIS] a:726 [A] ✔
1k:26 [ASN] 1a:690 [G] k:28 [ASN] a:698 [G] ✔
1k:26 [ASN] 1a:692 [U] k:28 [ASN] a:700 [U] ✔
1k:53 [SER] 1a:692 [U] k:55 [SER] a:700 [U] ✔
1k:53 [SER] 1a:694 [A] k:55 [SER] a:702 [A] ✔
1k:53 [SER] 1a:695 [A] k:55 [SER] a:703 [A] ✔
1k:40 [ILE] 1a:684 [A] k:42 [LEU] a:692 [U] ✔
1k:40 [ILE] 1a:685 [G] k:42 [LEU] a:693 [G] ✔
1k:37 [GLY] 1a:683 [G] k:39 [GLY] a:691 [G] ✔
1k:37 [GLY] 1a:707 [C] k:39 [GLY] a:715 [U] ✔
1k:37 [GLY] 1a:708 [C] k:39 [GLY] a:716 [A] ✔
1k:122 [LYS] 1a:779 [C] k:124 [PRO] a:787 [C] ✔
1k:115 [PRO] 1a:675 [A] k:117 [PRO] a:683 [A] ✔
1k:115 [PRO] 1a:676 [A] k:117 [PRO] a:684 [A] ✔
1k:115 [PRO] 1a:718 [G] k:117 [PRO] a:726 [A] ✔
1k:120 [ARG] 1a:778 [G] k:122 [ARG] a:786 [U] ✔
1k:120 [ARG] 1a:779 [C] k:122 [ARG] a:787 [C] ✔
1k:117 [ASN] 1a:716 [A] k:119 [ASN] a:724 [A] ✔
1k:117 [ASN] 1a:717 [C] k:119 [ASN] a:725 [C] ✔
1k:117 [ASN] 1a:718 [G] k:119 [ASN] a:726 [A] ✔
1k:50 [TYR] 1a:689 [C] k:52 [PHE] a:697 [C] ✔
1k:27 [ASN] 1a:688 [G] k:29 [ASN] a:696 [G] ✔
1k:27 [ASN] 1a:689 [C] k:29 [ASN] a:697 [C] ✔
1k:27 [ASN] 1a:690 [G] k:29 [ASN] a:698 [G] ✔
1k:24 [SER] 1a:690 [G] k:26 [THR] a:698 [G] ✔
1k:22 [HIS] 1a:706 [A] k:24 [ARG] a:714 [A] ✔
1k:22 [HIS] 1a:707 [C] k:24 [ARG] a:715 [U] ✔
1k:38 [ASN] 1a:683 [G] k:40 [ASN] a:691 [G] ✔
1k:38 [ASN] 1a:684 [A] k:40 [ASN] a:692 [U] ✔
1k:38 [ASN] 1a:707 [C] k:40 [ASN] a:715 [U] ✔
1k:113 [PRO] 1a:676 [A] k:115 [PRO] a:684 [A] ✔
1k:44 [SER] 1a:688 [G] k:46 [SER] a:696 [G] ✔
1k:44 [SER] 1a:689 [C] k:46 [SER] a:697 [C] ✔
1k:123 [LYS] 1a:779 [C] k:125 [LYS] a:787 [C] ✔
1k:123 [LYS] 1a:780 [A] k:125 [LYS] a:788 [A] ✔
1k:123 [LYS] 1a:1522 [U] k:125 [LYS] a:1533 [U] ✔
1k:123 [LYS] 1a:1523 [G] k:125 [LYS] a:1534 [G] ✔
1k:119 [CYS] 1a:714 [G] k:121 [CYS] a:722 [G] ✔
1k:119 [CYS] 1a:715 [A] k:121 [CYS] a:723 [A] ✔
1k:119 [CYS] 1a:777 [A] k:121 [CYS] a:785 [A] ✔
1k:119 [CYS] 1a:778 [G] k:121 [CYS] a:786 [U] ✔
1k:51 [LYS] 1a:691 [G] k:53 [LYS] a:699 [G] ✔
1k:51 [LYS] 1a:695 [A] k:53 [LYS] a:703 [A] ✔
1k:33 [THR] 1a:707 [C] k:35 [THR] a:715 [U] ✔
1k:42 [TRP] 1a:685 [G] k:44 [TRP] a:693 [G] ✔
1k:42 [TRP] 1a:686 [U] k:44 [TRP] a:694 [U] ✔
1k:42 [TRP] 1a:687 [A] k:44 [TRP] a:695 [A] ✔
1k:42 [TRP] 1a:704 [A] k:44 [TRP] a:712 [A] ✔
1k:42 [TRP] 1a:705 [U] k:44 [TRP] a:713 [G] ✔
1k:42 [TRP] 1a:706 [A] k:44 [TRP] a:714 [A] ✔
1k:29 [ILE] 1a:689 [C] k:31 [ILE] a:697 [C] ✔
1k:29 [ILE] 1a:705 [U] k:31 [ILE] a:713 [G] ✔
1k:29 [ILE] 1a:706 [A] k:31 [ILE] a:714 [A] ✔
1k:20 [TYR] 1a:706 [A] k:22 [HIS] a:714 [A] ❌ 6S0X_k_a
1k:39 [PRO] 1a:685 [G] k:41 [ALA] a:693 [G] ❌ 6S0X_k_a
1k:39 [PRO] 1a:706 [A] k:41 [ALA] a:714 [A] ❌ 6S0X_k_a
1k:41 [THR] 1a:685 [G] k:43 [SER] a:693 [G] ❌ 6S0X_k_a
1k:114 [VAL] 1a:676 [A] k:116 [VAL] a:684 [A] ❌ 6S0X_k_a
1k:47 [VAL] 1a:687 [A] k:49 [ALA] a:695 [A] ❌ 6S0X_k_a
1k:26 [ASN] 1a:691 [G] k:28 [ASN] a:699 [G] ❌ 6S0X_k_a
1k:53 [SER] 1a:691 [G] k:55 [SER] a:699 [G] ❌ 6S0X_k_a
1k:40 [ILE] 1a:686 [U] k:42 [LEU] a:694 [U] ❌ 6S0X_k_a
1k:122 [LYS] 1a:780 [A] k:124 [PRO] a:788 [A] ❌ 6S0X_k_a
1k:120 [ARG] 1a:1524 [C] k:122 [ARG] a:1535 [C] ❌ 6S0X_k_a
1k:117 [ASN] 1a:675 [A] k:119 [ASN] a:683 [A] ❌ 6S0X_k_a
1k:24 [SER] 1a:691 [G] k:26 [THR] a:699 [G] ❌ 6S0X_k_a
1k:22 [HIS] 1a:690 [G] k:24 [ARG] a:698 [G] ❌ 6S0X_k_a
1k:38 [ASN] 1a:708 [C] k:40 [ASN] a:716 [A] ❌ 6S0X_k_a
1k:113 [PRO] 1a:677 [U] k:115 [PRO] a:685 [U] ❌ 6S0X_k_a
1k:123 [LYS] 1a:795 [C] k:125 [LYS] a:803 [C] ❌ 6S0X_k_a
1k:123 [LYS] 1a:796 [C] k:125 [LYS] a:804 [C] ❌ 6S0X_k_a
1k:119 [CYS] 1a:676 [A] k:121 [CYS] a:684 [A] ❌ 6S0X_k_a
1k:119 [CYS] 1a:677 [U] k:121 [CYS] a:685 [U] ❌ 6S0X_k_a
1k:42 [TRP] 1a:688 [G] k:44 [TRP] a:696 [G] ❌ 6S0X_k_a
1k:29 [ILE] 1a:690 [G] k:31 [ILE] a:698 [G] ❌ 6S0X_k_a
1k:113 [PRO] 1a:675 [A] k:115 [PRO] a:683 [A] ❌ 4Y4O_1k_1a
1k:115 [PRO] 1a:674 [G] k:117 [PRO] a:682 [G] ❌ 4Y4O_1k_1a
1k:117 [ASN] 1a:674 [G] k:119 [ASN] a:682 [G] ❌ 4Y4O_1k_1a
1k:118 [GLY] 1a:674 [G] k:120 [GLY] a:682 [G] ❌ 4Y4O_1k_1a
1k:119 [CYS] 1a:716 [A] k:121 [CYS] a:724 [A] ❌ 4Y4O_1k_1a
1k:120 [ARG] 1a:777 [A] k:122 [ARG] a:785 [A] ❌ 4Y4O_1k_1a
1k:122 [LYS] 1a:778 [G] k:124 [PRO] a:786 [U] ❌ 4Y4O_1k_1a
1k:123 [LYS] 1a:1524 [C] k:125 [LYS] a:1535 [C] ❌ 4Y4O_1k_1a
1k:22 [HIS] 1a:676 [A] k:24 [ARG] a:684 [A] ❌ 4Y4O_1k_1a
1k:22 [HIS] 1a:677 [U] k:24 [ARG] a:685 [U] ❌ 4Y4O_1k_1a
1k:31 [THR] 1a:705 [U] k:33 [THR] a:713 [G] ❌ 4Y4O_1k_1a
1k:33 [THR] 1a:683 [G] k:35 [THR] a:691 [G] ❌ 4Y4O_1k_1a
1k:41 [THR] 1a:684 [A] k:43 [SER] a:692 [U] ❌ 4Y4O_1k_1a
1k:42 [TRP] 1a:684 [A] k:44 [TRP] a:692 [U] ❌ 4Y4O_1k_1a
1k:44 [SER] 1a:687 [A] k:46 [SER] a:695 [A] ❌ 4Y4O_1k_1a
1k:45 [GLY] 1a:688 [G] k:47 [ALA] a:696 [G] ❌ 4Y4O_1k_1a
1k:51 [LYS] 1a:690 [G] k:53 [LYS] a:698 [G] ❌ 4Y4O_1k_1a
1k:51 [LYS] 1a:692 [U] k:53 [LYS] a:700 [U] ❌ 4Y4O_1k_1a
1k:55 [LYS] 1a:692 [U] k:57 [LYS] a:700 [U] ❌ 4Y4O_1k_1a
1k:122 [LYS] 1a:798 [G] k:124 [PRO] a:806 [U] ❌ 6S0X_a:806 no longer at interface
1k:122 [LYS] 1a:799 [G] k:124 [PRO] a:807 [G] ❌ 6S0X_a:807 no longer at interface
1k:120 [ARG] 1a:1525 [G] k:122 [ARG] a:1536 [G] ❌ 6S0X_a:1536 no longer at interface
1k:116 [HIS] 1a:719 [C] k:118 [HIS] a:727 [C] ❌ 4Y4O_1a:719 no longer at interface
1k:125 [PHE] 1a:693 [G] k:127 [ARG] a:701 [G] ❌ 4Y4O_1k:125, 4Y4O_1a:693 no longer at interface
1k:36 [ASP] 1a:709 [G] k:38 [PHE] a:717 [U] ❌ 4Y4O_1a:709 no longer at interface
1k:51 [LYS] 1a:696 [A] k:53 [LYS] a:704 [A] ❌ 4Y4O_1a:696 no longer at interface
1k:52 [GLY] 1a:696 [A] k:54 [GLY] a:704 [A] ❌ 4Y4O_1a:696 no longer at interface
1k:53 [SER] 1a:693 [G] k:55 [SER] a:701 [G] ❌ 4Y4O_1a:693 no longer at interface
1k:75 [TYR] 1a:686 [U] k:76 [GLU] a:694 [U] ❌ 6S0X_k:76 no longer at interface
1k:124 [LYS] 1a:692 [U] k:126 [ARG] a:700 [U] ❌ 6S0X_k:126 no longer at interface
1k:124 [LYS] 1a:797 [C] k:126 [ARG] a:805 [C] ❌ 6S0X_k:126 no longer at interface
1k:18 [ARG] 1a:708 [C] k:20 [VAL] a:716 [A] ❌ 6S0X_k:20 no longer at interface
1k:71 [LYS] 1a:687 [A] k:73 [SER] a:695 [A] ❌ 6S0X_k:73 no longer at interface
1k:85 [ARG] 1a:706 [A] k:87 [LYS] a:714 [A] ❌ 6S0X_k:87 no longer at interface
1k:85 [ARG] 1a:707 [C] k:87 [LYS] a:715 [U] ❌ 6S0X_k:87 no longer at interface
1k:85 [ARG] 1a:708 [C] k:87 [LYS] a:716 [A] ❌ 6S0X_k:87 no longer at interface
1k:111 [ASP] 1a:708 [C] k:113 [VAL] a:716 [A] ❌ 6S0X_k:113 no longer at interface
1k:121 [PRO] 1a:778 [G] k:123 [PRO] a:786 [U] ❌ 6S0X_k:123 no longer at interface
1k:121 [PRO] 1a:779 [C] k:123 [PRO] a:787 [C] ❌ 6S0X_k:123 no longer at interface
1k:125 [PHE] 1a:796 [C] k:127 [ARG] a:804 [C] ❌ 4Y4O_1k:125 no longer at interface
1k:125 [PHE] 1a:692 [U] k:127 [ARG] a:700 [U] ❌ 4Y4O_1k:125 no longer at interface
1k:125 [PHE] 1a:797 [C] k:127 [ARG] a:805 [C] ❌ 4Y4O_1k:125 no longer at interface
1k:54 [ARG] 1a:695 [A] k:56 [LYS] a:703 [A] ❌ 4Y4O_1k:54 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like Bacterial small subunit ribosomal RNA 0.95 2.43 0.62 0.86 0.95 0.92 0.92 0.73 0.62 0.30 0.37


Other pairs involving 4Y4O_1k_1a or 6S0X_k_a

Total number of entries: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4YBB_AK_AA 6S0X_k_a 0.38 0.96 4.28 0.32 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 4YBB_AK_AA 0.62 0.96 3.51 0.4 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 6S0X_k_a 0.73 0.95 2.43 0.62 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 7O7Y_An_A2 0.80 0.93 2.71 0.26 Ribonuclease H-like compare
4Y4O_1k_1a 7K00_K_A 0.84 0.98 1.34 0.63 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 7RYG_k_a 0.83 0.92 2.81 0.62 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
6S0X_k_a 7O7Y_An_A2 0.73 0.9 4.43 0.24 Ribonuclease H-like compare
6S0X_k_a 7K00_K_A 0.76 0.96 3.11 0.7 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
6S0X_k_a 7RYG_k_a 0.54 0.96 4.13 0.41 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare