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All interfaces > All interologs > Interface groups > group102 > 4Y4O_1k_1a vs 7K00_K_A

Interface analysis


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Common contacts -

4Y4O_1k
4Y4O_1a
7K00_K
7K00_A
Conserved?
1k:20 [TYR] 1a:706 [A] K:22 [HIS] A:706 [A] ✔
1k:20 [TYR] 1a:707 [C] K:22 [HIS] A:707 [U] ✔
1k:20 [TYR] 1a:708 [C] K:22 [HIS] A:708 [C] ✔
1k:45 [GLY] 1a:689 [C] K:47 [ALA] A:689 [C] ✔
1k:39 [PRO] 1a:683 [G] K:41 [ALA] A:683 [G] ✔
1k:39 [PRO] 1a:684 [A] K:41 [ALA] A:684 [U] ✔
1k:39 [PRO] 1a:685 [G] K:41 [ALA] A:685 [G] ✔
1k:39 [PRO] 1a:706 [A] K:41 [ALA] A:706 [A] ✔
1k:36 [ASP] 1a:708 [C] K:38 [GLN] A:708 [C] ✔
1k:46 [GLY] 1a:688 [G] K:48 [GLY] A:688 [G] ✔
1k:46 [GLY] 1a:689 [C] K:48 [GLY] A:689 [C] ✔
1k:31 [THR] 1a:706 [A] K:33 [THR] A:706 [A] ✔
1k:31 [THR] 1a:707 [C] K:33 [THR] A:707 [U] ✔
1k:52 [GLY] 1a:691 [G] K:54 [GLY] A:691 [G] ✔
1k:52 [GLY] 1a:692 [U] K:54 [GLY] A:692 [U] ✔
1k:52 [GLY] 1a:695 [A] K:54 [GLY] A:695 [A] ✔
1k:114 [VAL] 1a:675 [A] K:116 [ILE] A:675 [A] ✔
1k:114 [VAL] 1a:676 [A] K:116 [ILE] A:676 [A] ✔
1k:114 [VAL] 1a:718 [G] K:116 [ILE] A:718 [A] ✔
1k:47 [VAL] 1a:688 [G] K:49 [GLY] A:688 [G] ✔
1k:47 [VAL] 1a:689 [C] K:49 [GLY] A:689 [C] ✔
1k:118 [GLY] 1a:675 [A] K:120 [GLY] A:675 [A] ✔
1k:118 [GLY] 1a:676 [A] K:120 [GLY] A:676 [A] ✔
1k:118 [GLY] 1a:715 [A] K:120 [GLY] A:715 [A] ✔
1k:118 [GLY] 1a:716 [A] K:120 [GLY] A:716 [A] ✔
1k:55 [LYS] 1a:689 [C] K:57 [LYS] A:689 [C] ✔
1k:55 [LYS] 1a:691 [G] K:57 [LYS] A:691 [G] ✔
1k:116 [HIS] 1a:674 [G] K:118 [HIS] A:674 [G] ✔
1k:116 [HIS] 1a:675 [A] K:118 [HIS] A:675 [A] ✔
1k:116 [HIS] 1a:716 [A] K:118 [HIS] A:716 [A] ✔
1k:116 [HIS] 1a:717 [C] K:118 [HIS] A:717 [U] ✔
1k:116 [HIS] 1a:718 [G] K:118 [HIS] A:718 [A] ✔
1k:26 [ASN] 1a:690 [G] K:28 [ASN] A:690 [G] ✔
1k:26 [ASN] 1a:691 [G] K:28 [ASN] A:691 [G] ✔
1k:26 [ASN] 1a:692 [U] K:28 [ASN] A:692 [U] ✔
1k:53 [SER] 1a:694 [A] K:55 [SER] A:694 [A] ✔
1k:53 [SER] 1a:695 [A] K:55 [SER] A:695 [A] ✔
1k:40 [ILE] 1a:684 [A] K:42 [LEU] A:684 [U] ✔
1k:40 [ILE] 1a:685 [G] K:42 [LEU] A:685 [G] ✔
1k:85 [ARG] 1a:707 [C] K:87 [LYS] A:707 [U] ✔
1k:37 [GLY] 1a:683 [G] K:39 [GLY] A:683 [G] ✔
1k:37 [GLY] 1a:707 [C] K:39 [GLY] A:707 [U] ✔
1k:37 [GLY] 1a:708 [C] K:39 [GLY] A:708 [C] ✔
1k:122 [LYS] 1a:779 [C] K:124 [PRO] A:779 [C] ✔
1k:122 [LYS] 1a:780 [A] K:124 [PRO] A:780 [A] ✔
1k:115 [PRO] 1a:675 [A] K:117 [PRO] A:675 [A] ✔
1k:115 [PRO] 1a:676 [A] K:117 [PRO] A:676 [A] ✔
1k:115 [PRO] 1a:718 [G] K:117 [PRO] A:718 [A] ✔
1k:120 [ARG] 1a:778 [G] K:122 [ARG] A:778 [G] ✔
1k:120 [ARG] 1a:779 [C] K:122 [ARG] A:779 [C] ✔
1k:120 [ARG] 1a:1524 [C] K:122 [ARG] A:1524 [C] ✔
1k:120 [ARG] 1a:1525 [G] K:122 [ARG] A:1525 [G] ✔
1k:27 [ASN] 1a:688 [G] K:29 [ASN] A:688 [G] ✔
1k:27 [ASN] 1a:689 [C] K:29 [ASN] A:689 [C] ✔
1k:27 [ASN] 1a:690 [G] K:29 [ASN] A:690 [G] ✔
1k:24 [SER] 1a:690 [G] K:26 [SER] A:690 [G] ✔
1k:24 [SER] 1a:691 [G] K:26 [SER] A:691 [G] ✔
1k:22 [HIS] 1a:690 [G] K:24 [HIS] A:690 [G] ✔
1k:22 [HIS] 1a:706 [A] K:24 [HIS] A:706 [A] ✔
1k:22 [HIS] 1a:707 [C] K:24 [HIS] A:707 [U] ✔
1k:38 [ASN] 1a:683 [G] K:40 [ASN] A:683 [G] ✔
1k:38 [ASN] 1a:684 [A] K:40 [ASN] A:684 [U] ✔
1k:38 [ASN] 1a:707 [C] K:40 [ASN] A:707 [U] ✔
1k:113 [PRO] 1a:676 [A] K:115 [PRO] A:676 [A] ✔
1k:113 [PRO] 1a:677 [U] K:115 [PRO] A:677 [U] ✔
1k:44 [SER] 1a:688 [G] K:46 [THR] A:688 [G] ✔
1k:44 [SER] 1a:689 [C] K:46 [THR] A:689 [C] ✔
1k:123 [LYS] 1a:779 [C] K:125 [LYS] A:779 [C] ✔
1k:123 [LYS] 1a:780 [A] K:125 [LYS] A:780 [A] ✔
1k:123 [LYS] 1a:796 [C] K:125 [LYS] A:796 [C] ✔
1k:123 [LYS] 1a:1522 [U] K:125 [LYS] A:1522 [U] ✔
1k:123 [LYS] 1a:1523 [G] K:125 [LYS] A:1523 [G] ✔
1k:119 [CYS] 1a:676 [A] K:121 [CYS] A:676 [A] ✔
1k:119 [CYS] 1a:677 [U] K:121 [CYS] A:677 [U] ✔
1k:119 [CYS] 1a:714 [G] K:121 [CYS] A:714 [G] ✔
1k:119 [CYS] 1a:777 [A] K:121 [CYS] A:777 [A] ✔
1k:119 [CYS] 1a:778 [G] K:121 [CYS] A:778 [G] ✔
1k:51 [LYS] 1a:691 [G] K:53 [ARG] A:691 [G] ✔
1k:51 [LYS] 1a:695 [A] K:53 [ARG] A:695 [A] ✔
1k:33 [THR] 1a:707 [C] K:35 [THR] A:707 [U] ✔
1k:42 [TRP] 1a:685 [G] K:44 [TRP] A:685 [G] ✔
1k:42 [TRP] 1a:686 [U] K:44 [TRP] A:686 [U] ✔
1k:42 [TRP] 1a:687 [A] K:44 [TRP] A:687 [A] ✔
1k:42 [TRP] 1a:688 [G] K:44 [TRP] A:688 [G] ✔
1k:42 [TRP] 1a:704 [A] K:44 [TRP] A:704 [A] ✔
1k:42 [TRP] 1a:705 [U] K:44 [TRP] A:705 [G] ✔
1k:29 [ILE] 1a:689 [C] K:31 [ILE] A:689 [C] ✔
1k:29 [ILE] 1a:690 [G] K:31 [ILE] A:690 [G] ✔
1k:29 [ILE] 1a:705 [U] K:31 [ILE] A:705 [G] ✔
1k:29 [ILE] 1a:706 [A] K:31 [ILE] A:706 [A] ✔
1k:121 [PRO] 1a:778 [G] K:123 [PRO] A:778 [G] ✔
1k:121 [PRO] 1a:779 [C] K:123 [PRO] A:779 [C] ✔
1k:75 [TYR] 1a:686 [U] K:77 [TYR] A:686 [U] ❌ 7K00_K_A
1k:39 [PRO] 1a:707 [C] K:41 [ALA] A:707 [U] ❌ 7K00_K_A
1k:124 [LYS] 1a:692 [U] K:126 [LYS] A:692 [U] ❌ 7K00_K_A
1k:124 [LYS] 1a:797 [C] K:126 [LYS] A:797 [C] ❌ 7K00_K_A
1k:47 [VAL] 1a:687 [A] K:49 [GLY] A:687 [A] ❌ 7K00_K_A
1k:55 [LYS] 1a:690 [G] K:57 [LYS] A:690 [G] ❌ 7K00_K_A
1k:53 [SER] 1a:691 [G] K:55 [SER] A:691 [G] ❌ 7K00_K_A
1k:53 [SER] 1a:692 [U] K:55 [SER] A:692 [U] ❌ 7K00_K_A
1k:40 [ILE] 1a:686 [U] K:42 [LEU] A:686 [U] ❌ 7K00_K_A
1k:85 [ARG] 1a:706 [A] K:87 [LYS] A:706 [A] ❌ 7K00_K_A
1k:85 [ARG] 1a:708 [C] K:87 [LYS] A:708 [C] ❌ 7K00_K_A
1k:38 [ASN] 1a:708 [C] K:40 [ASN] A:708 [C] ❌ 7K00_K_A
1k:123 [LYS] 1a:795 [C] K:125 [LYS] A:795 [C] ❌ 7K00_K_A
1k:119 [CYS] 1a:715 [A] K:121 [CYS] A:715 [A] ❌ 7K00_K_A
1k:42 [TRP] 1a:706 [A] K:44 [TRP] A:706 [A] ❌ 7K00_K_A
1k:116 [HIS] 1a:676 [A] K:118 [HIS] A:676 [A] ❌ 4Y4O_1k_1a
1k:124 [LYS] 1a:796 [C] K:126 [LYS] A:796 [C] ❌ 4Y4O_1k_1a
1k:31 [THR] 1a:705 [U] K:33 [THR] A:705 [G] ❌ 4Y4O_1k_1a
1k:37 [GLY] 1a:684 [A] K:39 [GLY] A:684 [U] ❌ 4Y4O_1k_1a
1k:44 [SER] 1a:705 [U] K:46 [THR] A:705 [G] ❌ 4Y4O_1k_1a
1k:51 [LYS] 1a:689 [C] K:53 [ARG] A:689 [C] ❌ 4Y4O_1k_1a
1k:51 [LYS] 1a:690 [G] K:53 [ARG] A:690 [G] ❌ 4Y4O_1k_1a
1k:52 [GLY] 1a:694 [A] K:54 [GLY] A:694 [A] ❌ 4Y4O_1k_1a
1k:55 [LYS] 1a:692 [U] K:57 [LYS] A:692 [U] ❌ 4Y4O_1k_1a
1k:75 [TYR] 1a:685 [G] K:77 [TYR] A:685 [G] ❌ 4Y4O_1k_1a
1k:122 [LYS] 1a:798 [G] K:124 [PRO] A:798 [U] ❌ 7K00_A:798 no longer at interface
1k:122 [LYS] 1a:799 [G] K:124 [PRO] A:799 [G] ❌ 7K00_A:799 no longer at interface
1k:123 [LYS] 1a:781 [A] K:125 [LYS] A:781 [A] ❌ 4Y4O_1a:781 no longer at interface
1k:125 [PHE] 1a:693 [G] K:127 [ARG] A:693 [G] ❌ 4Y4O_1k:125, 4Y4O_1a:693 no longer at interface
1k:41 [THR] 1a:685 [G] K:43 [GLY] A:685 [G] ❌ 7K00_K:43 no longer at interface
1k:18 [ARG] 1a:708 [C] K:20 [VAL] A:708 [C] ❌ 7K00_K:20 no longer at interface
1k:71 [LYS] 1a:687 [A] K:73 [ALA] A:687 [A] ❌ 7K00_K:73 no longer at interface
1k:111 [ASP] 1a:708 [C] K:113 [VAL] A:708 [C] ❌ 7K00_K:113 no longer at interface
1k:50 [TYR] 1a:689 [C] K:52 [PHE] A:689 [C] ❌ 7K00_K:52 no longer at interface
1k:125 [PHE] 1a:797 [C] K:127 [ARG] A:797 [C] ❌ 4Y4O_1k:125 no longer at interface
1k:125 [PHE] 1a:692 [U] K:127 [ARG] A:692 [U] ❌ 4Y4O_1k:125 no longer at interface
1k:125 [PHE] 1a:796 [C] K:127 [ARG] A:796 [C] ❌ 4Y4O_1k:125 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like Bacterial small subunit ribosomal RNA 0.98 1.34 0.63 0.92 0.98 0.92 0.95 0.84 0.87 0.43 0.32


Other pairs involving 4Y4O_1k_1a or 7K00_K_A

Total number of entries: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1k_1a 4YBB_AK_AA 0.62 0.96 3.51 0.4 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 6S0X_k_a 0.73 0.95 2.43 0.62 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 7O7Y_An_A2 0.80 0.93 2.71 0.26 Ribonuclease H-like compare
4Y4O_1k_1a 7K00_K_A 0.84 0.98 1.34 0.63 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 7RYG_k_a 0.83 0.92 2.81 0.62 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4YBB_AK_AA 7K00_K_A 0.74 0.98 2.98 0.79 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
6S0X_k_a 7K00_K_A 0.76 0.96 3.11 0.7 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
7K00_K_A 7RYG_k_a 0.93 0.93 2.33 0.95 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
7K00_K_A 7O7Y_An_A2 0.86 0.92 2.19 0.32 Ribonuclease H-like compare