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All interfaces > All interologs > Interface groups > group102 > 4Y4O_1k_1a vs 7RYG_k_a

Interface analysis


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Common contacts -

4Y4O_1k
4Y4O_1a
7RYG_k
7RYG_a
Conserved?
1k:20 [TYR] 1a:707 [C] k:21 [HIS] a:704 [U] ✔
1k:45 [GLY] 1a:689 [C] k:46 [SER] a:686 [C] ✔
1k:39 [PRO] 1a:683 [G] k:40 [ALA] a:680 [G] ✔
1k:39 [PRO] 1a:684 [A] k:40 [ALA] a:681 [U] ✔
1k:39 [PRO] 1a:685 [G] k:40 [ALA] a:682 [G] ✔
1k:39 [PRO] 1a:706 [A] k:40 [ALA] a:703 [A] ✔
1k:36 [ASP] 1a:708 [C] k:37 [GLN] a:705 [C] ✔
1k:46 [GLY] 1a:688 [G] k:47 [GLY] a:685 [G] ✔
1k:46 [GLY] 1a:689 [C] k:47 [GLY] a:686 [C] ✔
1k:31 [THR] 1a:706 [A] k:32 [THR] a:703 [A] ✔
1k:31 [THR] 1a:707 [C] k:32 [THR] a:704 [U] ✔
1k:52 [GLY] 1a:691 [G] k:53 [GLY] a:688 [G] ✔
1k:52 [GLY] 1a:692 [U] k:53 [GLY] a:689 [U] ✔
1k:52 [GLY] 1a:695 [A] k:53 [GLY] a:692 [A] ✔
1k:114 [VAL] 1a:675 [A] k:115 [ILE] a:672 [A] ✔
1k:114 [VAL] 1a:676 [A] k:115 [ILE] a:673 [A] ✔
1k:114 [VAL] 1a:718 [G] k:115 [ILE] a:715 [A] ✔
1k:47 [VAL] 1a:688 [G] k:48 [GLY] a:685 [G] ✔
1k:118 [GLY] 1a:675 [A] k:119 [GLY] a:672 [A] ✔
1k:118 [GLY] 1a:676 [A] k:119 [GLY] a:673 [A] ✔
1k:118 [GLY] 1a:715 [A] k:119 [GLY] a:712 [A] ✔
1k:118 [GLY] 1a:716 [A] k:119 [GLY] a:713 [A] ✔
1k:55 [LYS] 1a:689 [C] k:56 [LYS] a:686 [C] ✔
1k:55 [LYS] 1a:690 [G] k:56 [LYS] a:687 [G] ✔
1k:55 [LYS] 1a:691 [G] k:56 [LYS] a:688 [G] ✔
1k:116 [HIS] 1a:674 [G] k:117 [HIS] a:671 [G] ✔
1k:116 [HIS] 1a:675 [A] k:117 [HIS] a:672 [A] ✔
1k:116 [HIS] 1a:716 [A] k:117 [HIS] a:713 [A] ✔
1k:116 [HIS] 1a:717 [C] k:117 [HIS] a:714 [U] ✔
1k:116 [HIS] 1a:718 [G] k:117 [HIS] a:715 [A] ✔
1k:26 [ASN] 1a:690 [G] k:27 [ASN] a:687 [G] ✔
1k:26 [ASN] 1a:691 [G] k:27 [ASN] a:688 [G] ✔
1k:26 [ASN] 1a:692 [U] k:27 [ASN] a:689 [U] ✔
1k:53 [SER] 1a:692 [U] k:54 [SER] a:689 [U] ✔
1k:53 [SER] 1a:694 [A] k:54 [SER] a:691 [A] ✔
1k:53 [SER] 1a:695 [A] k:54 [SER] a:692 [A] ✔
1k:40 [ILE] 1a:684 [A] k:41 [LEU] a:681 [U] ✔
1k:40 [ILE] 1a:685 [G] k:41 [LEU] a:682 [G] ✔
1k:85 [ARG] 1a:707 [C] k:86 [LYS] a:704 [U] ✔
1k:37 [GLY] 1a:683 [G] k:38 [GLY] a:680 [G] ✔
1k:37 [GLY] 1a:707 [C] k:38 [GLY] a:704 [U] ✔
1k:37 [GLY] 1a:708 [C] k:38 [GLY] a:705 [C] ✔
1k:122 [LYS] 1a:779 [C] k:123 [PRO] a:776 [C] ✔
1k:122 [LYS] 1a:780 [A] k:123 [PRO] a:777 [A] ✔
1k:115 [PRO] 1a:675 [A] k:116 [PRO] a:672 [A] ✔
1k:115 [PRO] 1a:676 [A] k:116 [PRO] a:673 [A] ✔
1k:115 [PRO] 1a:718 [G] k:116 [PRO] a:715 [A] ✔
1k:120 [ARG] 1a:778 [G] k:121 [ARG] a:775 [G] ✔
1k:120 [ARG] 1a:779 [C] k:121 [ARG] a:776 [C] ✔
1k:120 [ARG] 1a:1524 [C] k:121 [ARG] a:1521 [C] ✔
1k:120 [ARG] 1a:1525 [G] k:121 [ARG] a:1522 [G] ✔
1k:117 [ASN] 1a:675 [A] k:118 [ASN] a:672 [A] ✔
1k:117 [ASN] 1a:716 [A] k:118 [ASN] a:713 [A] ✔
1k:117 [ASN] 1a:717 [C] k:118 [ASN] a:714 [U] ✔
1k:117 [ASN] 1a:718 [G] k:118 [ASN] a:715 [A] ✔
1k:27 [ASN] 1a:689 [C] k:28 [ASN] a:686 [C] ✔
1k:27 [ASN] 1a:690 [G] k:28 [ASN] a:687 [G] ✔
1k:24 [SER] 1a:690 [G] k:25 [SER] a:687 [G] ✔
1k:22 [HIS] 1a:706 [A] k:23 [HIS] a:703 [A] ✔
1k:22 [HIS] 1a:707 [C] k:23 [HIS] a:704 [U] ✔
1k:38 [ASN] 1a:683 [G] k:39 [ASN] a:680 [G] ✔
1k:38 [ASN] 1a:684 [A] k:39 [ASN] a:681 [U] ✔
1k:113 [PRO] 1a:676 [A] k:114 [PRO] a:673 [A] ✔
1k:113 [PRO] 1a:677 [U] k:114 [PRO] a:674 [U] ✔
1k:44 [SER] 1a:688 [G] k:45 [THR] a:685 [G] ✔
1k:44 [SER] 1a:689 [C] k:45 [THR] a:686 [C] ✔
1k:123 [LYS] 1a:779 [C] k:124 [LYS] a:776 [C] ✔
1k:123 [LYS] 1a:780 [A] k:124 [LYS] a:777 [A] ✔
1k:123 [LYS] 1a:1522 [U] k:124 [LYS] a:1519 [U] ✔
1k:123 [LYS] 1a:1523 [G] k:124 [LYS] a:1520 [G] ✔
1k:119 [CYS] 1a:676 [A] k:120 [CYS] a:673 [A] ✔
1k:119 [CYS] 1a:677 [U] k:120 [CYS] a:674 [U] ✔
1k:119 [CYS] 1a:714 [G] k:120 [CYS] a:711 [G] ✔
1k:119 [CYS] 1a:715 [A] k:120 [CYS] a:712 [A] ✔
1k:119 [CYS] 1a:777 [A] k:120 [CYS] a:774 [A] ✔
1k:119 [CYS] 1a:778 [G] k:120 [CYS] a:775 [G] ✔
1k:51 [LYS] 1a:695 [A] k:52 [ARG] a:692 [A] ✔
1k:42 [TRP] 1a:685 [G] k:43 [TRP] a:682 [G] ✔
1k:42 [TRP] 1a:686 [U] k:43 [TRP] a:683 [U] ✔
1k:42 [TRP] 1a:687 [A] k:43 [TRP] a:684 [A] ✔
1k:42 [TRP] 1a:688 [G] k:43 [TRP] a:685 [G] ✔
1k:42 [TRP] 1a:704 [A] k:43 [TRP] a:701 [A] ✔
1k:42 [TRP] 1a:705 [U] k:43 [TRP] a:702 [G] ✔
1k:29 [ILE] 1a:689 [C] k:30 [ILE] a:686 [C] ✔
1k:29 [ILE] 1a:690 [G] k:30 [ILE] a:687 [G] ✔
1k:29 [ILE] 1a:705 [U] k:30 [ILE] a:702 [G] ✔
1k:121 [PRO] 1a:778 [G] k:122 [PRO] a:775 [G] ✔
1k:121 [PRO] 1a:779 [C] k:122 [PRO] a:776 [C] ✔
1k:20 [TYR] 1a:706 [A] k:21 [HIS] a:703 [A] ❌ 7RYG_k_a
1k:20 [TYR] 1a:708 [C] k:21 [HIS] a:705 [C] ❌ 7RYG_k_a
1k:39 [PRO] 1a:707 [C] k:40 [ALA] a:704 [U] ❌ 7RYG_k_a
1k:124 [LYS] 1a:692 [U] k:125 [LYS] a:689 [U] ❌ 7RYG_k_a
1k:124 [LYS] 1a:797 [C] k:125 [LYS] a:794 [C] ❌ 7RYG_k_a
1k:47 [VAL] 1a:687 [A] k:48 [GLY] a:684 [A] ❌ 7RYG_k_a
1k:47 [VAL] 1a:689 [C] k:48 [GLY] a:686 [C] ❌ 7RYG_k_a
1k:53 [SER] 1a:691 [G] k:54 [SER] a:688 [G] ❌ 7RYG_k_a
1k:40 [ILE] 1a:686 [U] k:41 [LEU] a:683 [U] ❌ 7RYG_k_a
1k:85 [ARG] 1a:706 [A] k:86 [LYS] a:703 [A] ❌ 7RYG_k_a
1k:85 [ARG] 1a:708 [C] k:86 [LYS] a:705 [C] ❌ 7RYG_k_a
1k:27 [ASN] 1a:688 [G] k:28 [ASN] a:685 [G] ❌ 7RYG_k_a
1k:24 [SER] 1a:691 [G] k:25 [SER] a:688 [G] ❌ 7RYG_k_a
1k:22 [HIS] 1a:690 [G] k:23 [HIS] a:687 [G] ❌ 7RYG_k_a
1k:38 [ASN] 1a:707 [C] k:39 [ASN] a:704 [U] ❌ 7RYG_k_a
1k:38 [ASN] 1a:708 [C] k:39 [ASN] a:705 [C] ❌ 7RYG_k_a
1k:123 [LYS] 1a:795 [C] k:124 [LYS] a:792 [C] ❌ 7RYG_k_a
1k:123 [LYS] 1a:796 [C] k:124 [LYS] a:793 [C] ❌ 7RYG_k_a
1k:51 [LYS] 1a:691 [G] k:52 [ARG] a:688 [G] ❌ 7RYG_k_a
1k:42 [TRP] 1a:706 [A] k:43 [TRP] a:703 [A] ❌ 7RYG_k_a
1k:29 [ILE] 1a:706 [A] k:30 [ILE] a:703 [A] ❌ 7RYG_k_a
1k:124 [LYS] 1a:796 [C] k:125 [LYS] a:793 [C] ❌ 4Y4O_1k_1a
1k:122 [LYS] 1a:798 [G] k:123 [PRO] a:795 [U] ❌ 7RYG_a:795 no longer at interface
1k:122 [LYS] 1a:799 [G] k:123 [PRO] a:796 [G] ❌ 7RYG_a:796 no longer at interface
1k:123 [LYS] 1a:781 [A] k:124 [LYS] a:778 [A] ❌ 4Y4O_1a:781 no longer at interface
1k:125 [PHE] 1a:693 [G] k:126 [ARG] a:690 [G] ❌ 4Y4O_1k:125, 4Y4O_1a:693 no longer at interface
1k:53 [SER] 1a:693 [G] k:54 [SER] a:690 [G] ❌ 4Y4O_1a:693 no longer at interface
1k:75 [TYR] 1a:686 [U] k:76 [TYR] a:683 [U] ❌ 7RYG_k:76 no longer at interface
1k:41 [THR] 1a:685 [G] k:42 [ALA] a:682 [G] ❌ 7RYG_k:42 no longer at interface
1k:18 [ARG] 1a:708 [C] k:19 [VAL] a:705 [C] ❌ 7RYG_k:19 no longer at interface
1k:71 [LYS] 1a:687 [A] k:72 [ALA] a:684 [A] ❌ 7RYG_k:72 no longer at interface
1k:111 [ASP] 1a:708 [C] k:112 [VAL] a:705 [C] ❌ 7RYG_k:112 no longer at interface
1k:50 [TYR] 1a:689 [C] k:51 [PHE] a:686 [C] ❌ 7RYG_k:51 no longer at interface
1k:33 [THR] 1a:707 [C] k:34 [THR] a:704 [U] ❌ 7RYG_k:34 no longer at interface
1k:125 [PHE] 1a:692 [U] k:126 [ARG] a:689 [U] ❌ 4Y4O_1k:125 no longer at interface
1k:125 [PHE] 1a:796 [C] k:126 [ARG] a:793 [C] ❌ 4Y4O_1k:125 no longer at interface
1k:125 [PHE] 1a:797 [C] k:126 [ARG] a:794 [C] ❌ 4Y4O_1k:125 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like Bacterial small subunit ribosomal RNA 0.92 2.81 0.62 0.93 0.91 0.92 0.95 0.83 0.76 0.45 0.41


Other pairs involving 4Y4O_1k_1a or 7RYG_k_a

Total number of entries: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4YBB_AK_AA 7RYG_k_a 0.92 0.97 1.43 0.97 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 4YBB_AK_AA 0.62 0.96 3.51 0.4 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 6S0X_k_a 0.73 0.95 2.43 0.62 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 7O7Y_An_A2 0.80 0.93 2.71 0.26 Ribonuclease H-like compare
4Y4O_1k_1a 7K00_K_A 0.84 0.98 1.34 0.63 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 7RYG_k_a 0.83 0.92 2.81 0.62 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
7K00_K_A 7RYG_k_a 0.93 0.93 2.33 0.95 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
6S0X_k_a 7RYG_k_a 0.54 0.96 4.13 0.41 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare