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All interfaces > All interologs > Interface groups > group102 > 4YBB_AK_AA vs 6S0X_k_a

Interface analysis


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Common contacts -

4YBB_AK
4YBB_AA
6S0X_k
6S0X_a
Conserved?
AK:43 [GLY] AA:685 [G] k:44 [TRP] a:693 [G] ✔
AK:124 [PRO] AA:779 [C] k:125 [LYS] a:787 [C] ✔
AK:124 [PRO] AA:780 [A] k:125 [LYS] a:788 [A] ✔
AK:126 [LYS] AA:796 [C] k:127 [ARG] a:804 [C] ✔
AK:54 [GLY] AA:691 [G] k:54 [GLY] a:699 [G] ✔
AK:54 [GLY] AA:692 [U] k:54 [GLY] a:700 [U] ✔
AK:54 [GLY] AA:695 [A] k:54 [GLY] a:703 [A] ✔
AK:53 [ARG] AA:690 [G] k:53 [LYS] a:698 [G] ✔
AK:53 [ARG] AA:691 [G] k:53 [LYS] a:699 [G] ✔
AK:53 [ARG] AA:695 [A] k:53 [LYS] a:703 [A] ✔
AK:29 [ASN] AA:690 [G] k:28 [ASN] a:698 [G] ✔
AK:117 [PRO] AA:675 [A] k:117 [PRO] a:683 [A] ✔
AK:117 [PRO] AA:676 [A] k:117 [PRO] a:684 [A] ✔
AK:117 [PRO] AA:718 [A] k:117 [PRO] a:726 [A] ✔
AK:48 [GLY] AA:688 [G] k:48 [GLY] a:696 [G] ✔
AK:48 [GLY] AA:689 [C] k:48 [GLY] a:697 [C] ✔
AK:121 [CYS] AA:777 [A] k:122 [ARG] a:785 [A] ✔
AK:121 [CYS] AA:778 [G] k:122 [ARG] a:786 [U] ✔
AK:49 [GLY] AA:688 [G] k:49 [ALA] a:696 [G] ✔
AK:49 [GLY] AA:689 [C] k:49 [ALA] a:697 [C] ✔
AK:119 [ASN] AA:716 [A] k:119 [ASN] a:724 [A] ✔
AK:119 [ASN] AA:717 [U] k:119 [ASN] a:725 [C] ✔
AK:119 [ASN] AA:718 [A] k:119 [ASN] a:726 [A] ✔
AK:40 [ASN] AA:683 [G] k:41 [ALA] a:691 [G] ✔
AK:40 [ASN] AA:684 [U] k:41 [ALA] a:692 [U] ✔
AK:40 [ASN] AA:707 [U] k:41 [ALA] a:715 [U] ✔
AK:115 [PRO] AA:676 [A] k:115 [PRO] a:684 [A] ✔
AK:127 [ARG] AA:796 [C] k:128 [ARG] a:804 [C] ✔
AK:39 [GLY] AA:683 [G] k:39 [GLY] a:691 [G] ✔
AK:39 [GLY] AA:707 [U] k:39 [GLY] a:715 [U] ✔
AK:39 [GLY] AA:708 [C] k:39 [GLY] a:716 [A] ✔
AK:55 [SER] AA:694 [A] k:55 [SER] a:702 [A] ✔
AK:55 [SER] AA:695 [A] k:55 [SER] a:703 [A] ✔
AK:46 [THR] AA:688 [G] k:47 [ALA] a:696 [G] ✔
AK:46 [THR] AA:689 [C] k:47 [ALA] a:697 [C] ✔
AK:41 [ALA] AA:684 [U] k:42 [LEU] a:692 [U] ✔
AK:41 [ALA] AA:685 [G] k:42 [LEU] a:693 [G] ✔
AK:123 [PRO] AA:778 [G] k:124 [PRO] a:786 [U] ✔
AK:123 [PRO] AA:779 [C] k:124 [PRO] a:787 [C] ✔
AK:120 [GLY] AA:715 [A] k:121 [CYS] a:723 [A] ✔
AK:120 [GLY] AA:716 [A] k:121 [CYS] a:724 [A] ✔
AK:118 [HIS] AA:674 [G] k:118 [HIS] a:682 [G] ✔
AK:118 [HIS] AA:675 [A] k:118 [HIS] a:683 [A] ✔
AK:118 [HIS] AA:716 [A] k:118 [HIS] a:724 [A] ✔
AK:118 [HIS] AA:717 [U] k:118 [HIS] a:725 [C] ✔
AK:118 [HIS] AA:718 [A] k:118 [HIS] a:726 [A] ✔
AK:116 [ILE] AA:675 [A] k:116 [VAL] a:683 [A] ✔
AK:116 [ILE] AA:718 [A] k:116 [VAL] a:726 [A] ✔
AK:42 [LEU] AA:684 [U] k:43 [SER] a:692 [U] ✔
AK:54 [GLY] AA:694 [A] k:54 [GLY] a:702 [A] ❌ 6S0X_k_a
AK:57 [LYS] AA:689 [C] k:56 [LYS] a:697 [C] ❌ 6S0X_k_a
AK:57 [LYS] AA:690 [G] k:56 [LYS] a:698 [G] ❌ 6S0X_k_a
AK:57 [LYS] AA:691 [G] k:56 [LYS] a:699 [G] ❌ 6S0X_k_a
AK:57 [LYS] AA:692 [U] k:56 [LYS] a:700 [U] ❌ 6S0X_k_a
AK:53 [ARG] AA:689 [C] k:53 [LYS] a:697 [C] ❌ 6S0X_k_a
AK:29 [ASN] AA:689 [C] k:28 [ASN] a:697 [C] ❌ 6S0X_k_a
AK:121 [CYS] AA:676 [A] k:122 [ARG] a:684 [A] ❌ 6S0X_k_a
AK:121 [CYS] AA:677 [U] k:122 [ARG] a:685 [U] ❌ 6S0X_k_a
AK:121 [CYS] AA:714 [G] k:122 [ARG] a:722 [G] ❌ 6S0X_k_a
AK:119 [ASN] AA:675 [A] k:119 [ASN] a:683 [A] ❌ 6S0X_k_a
AK:115 [PRO] AA:677 [U] k:115 [PRO] a:685 [U] ❌ 6S0X_k_a
AK:127 [ARG] AA:692 [U] k:128 [ARG] a:700 [U] ❌ 6S0X_k_a
AK:127 [ARG] AA:693 [G] k:128 [ARG] a:701 [G] ❌ 6S0X_k_a
AK:127 [ARG] AA:797 [C] k:128 [ARG] a:805 [C] ❌ 6S0X_k_a
AK:39 [GLY] AA:684 [U] k:39 [GLY] a:692 [U] ❌ 6S0X_k_a
AK:46 [THR] AA:705 [G] k:47 [ALA] a:713 [G] ❌ 6S0X_k_a
AK:41 [ALA] AA:683 [G] k:42 [LEU] a:691 [G] ❌ 6S0X_k_a
AK:41 [ALA] AA:706 [A] k:42 [LEU] a:714 [A] ❌ 6S0X_k_a
AK:41 [ALA] AA:707 [U] k:42 [LEU] a:715 [U] ❌ 6S0X_k_a
AK:120 [GLY] AA:675 [A] k:121 [CYS] a:683 [A] ❌ 6S0X_k_a
AK:120 [GLY] AA:676 [A] k:121 [CYS] a:684 [A] ❌ 6S0X_k_a
AK:116 [ILE] AA:676 [A] k:116 [VAL] a:684 [A] ❌ 6S0X_k_a
AK:42 [LEU] AA:685 [G] k:43 [SER] a:693 [G] ❌ 6S0X_k_a
AK:115 [PRO] AA:675 [A] k:115 [PRO] a:683 [A] ❌ 4YBB_AK_AA
AK:117 [PRO] AA:674 [G] k:117 [PRO] a:682 [G] ❌ 4YBB_AK_AA
AK:119 [ASN] AA:674 [G] k:119 [ASN] a:682 [G] ❌ 4YBB_AK_AA
AK:120 [GLY] AA:714 [G] k:121 [CYS] a:722 [G] ❌ 4YBB_AK_AA
AK:120 [GLY] AA:777 [A] k:121 [CYS] a:785 [A] ❌ 4YBB_AK_AA
AK:120 [GLY] AA:778 [G] k:121 [CYS] a:786 [U] ❌ 4YBB_AK_AA
AK:121 [CYS] AA:779 [C] k:122 [ARG] a:787 [C] ❌ 4YBB_AK_AA
AK:124 [PRO] AA:1524 [C] k:125 [LYS] a:1535 [C] ❌ 4YBB_AK_AA
AK:124 [PRO] AA:1523 [G] k:125 [LYS] a:1534 [G] ❌ 4YBB_AK_AA
AK:124 [PRO] AA:1522 [U] k:125 [LYS] a:1533 [U] ❌ 4YBB_AK_AA
AK:126 [LYS] AA:692 [U] k:127 [ARG] a:700 [U] ❌ 4YBB_AK_AA
AK:126 [LYS] AA:693 [G] k:127 [ARG] a:701 [G] ❌ 4YBB_AK_AA
AK:126 [LYS] AA:797 [C] k:127 [ARG] a:805 [C] ❌ 4YBB_AK_AA
AK:127 [ARG] AA:1523 [G] k:128 [ARG] a:1534 [G] ❌ 4YBB_AK_AA
AK:127 [ARG] AA:795 [C] k:128 [ARG] a:803 [C] ❌ 4YBB_AK_AA
AK:127 [ARG] AA:1522 [U] k:128 [ARG] a:1533 [U] ❌ 4YBB_AK_AA
AK:29 [ASN] AA:692 [U] k:28 [ASN] a:700 [U] ❌ 4YBB_AK_AA
AK:43 [GLY] AA:687 [A] k:44 [TRP] a:695 [A] ❌ 4YBB_AK_AA
AK:43 [GLY] AA:684 [U] k:44 [TRP] a:692 [U] ❌ 4YBB_AK_AA
AK:43 [GLY] AA:705 [G] k:44 [TRP] a:713 [G] ❌ 4YBB_AK_AA
AK:43 [GLY] AA:686 [U] k:44 [TRP] a:694 [U] ❌ 4YBB_AK_AA
AK:43 [GLY] AA:704 [A] k:44 [TRP] a:712 [A] ❌ 4YBB_AK_AA
AK:43 [GLY] AA:706 [A] k:44 [TRP] a:714 [A] ❌ 4YBB_AK_AA
AK:53 [ARG] AA:692 [U] k:53 [LYS] a:700 [U] ❌ 4YBB_AK_AA
AK:55 [SER] AA:692 [U] k:55 [SER] a:700 [U] ❌ 4YBB_AK_AA
AK:55 [SER] AA:693 [G] k:55 [SER] a:701 [G] ❌ 4YBB_AK_AA
AK:57 [LYS] AA:695 [A] k:56 [LYS] a:703 [A] ❌ 4YBB_AK_AA
AK:122 [ARG] AA:1525 [G] k:123 [PRO] a:1536 [G] ❌ 6S0X_k:123, 6S0X_a:1536 no longer at interface
AK:118 [HIS] AA:719 [C] k:118 [HIS] a:727 [C] ❌ 4YBB_AA:719 no longer at interface
AK:53 [ARG] AA:696 [A] k:53 [LYS] a:704 [A] ❌ 4YBB_AA:696 no longer at interface
AK:54 [GLY] AA:696 [A] k:54 [GLY] a:704 [A] ❌ 4YBB_AA:696 no longer at interface
AK:24 [HIS] AA:690 [G] k:25 [SER] a:698 [G] ❌ 6S0X_k:25 no longer at interface
AK:24 [HIS] AA:706 [A] k:25 [SER] a:714 [A] ❌ 6S0X_k:25 no longer at interface
AK:24 [HIS] AA:707 [U] k:25 [SER] a:715 [U] ❌ 6S0X_k:25 no longer at interface
AK:26 [SER] AA:690 [G] k:27 [PHE] a:698 [G] ❌ 6S0X_k:27 no longer at interface
AK:26 [SER] AA:691 [G] k:27 [PHE] a:699 [G] ❌ 6S0X_k:27 no longer at interface
AK:125 [LYS] AA:779 [C] k:126 [ARG] a:787 [C] ❌ 6S0X_k:126 no longer at interface
AK:125 [LYS] AA:780 [A] k:126 [ARG] a:788 [A] ❌ 6S0X_k:126 no longer at interface
AK:125 [LYS] AA:1523 [G] k:126 [ARG] a:1534 [G] ❌ 6S0X_k:126 no longer at interface
AK:125 [LYS] AA:1524 [C] k:126 [ARG] a:1535 [C] ❌ 6S0X_k:126 no longer at interface
AK:87 [LYS] AA:707 [U] k:88 [GLY] a:715 [U] ❌ 6S0X_k:88 no longer at interface
AK:87 [LYS] AA:708 [C] k:88 [GLY] a:716 [A] ❌ 6S0X_k:88 no longer at interface
AK:77 [TYR] AA:685 [G] k:75 [MET] a:693 [G] ❌ 6S0X_k:75 no longer at interface
AK:35 [THR] AA:707 [U] k:34 [ILE] a:715 [U] ❌ 6S0X_k:34 no longer at interface
AK:38 [GLN] AA:708 [C] k:37 [GLU] a:716 [A] ❌ 6S0X_k:37 no longer at interface
AK:22 [HIS] AA:706 [A] k:23 [ILE] a:714 [A] ❌ 6S0X_k:23 no longer at interface
AK:22 [HIS] AA:707 [U] k:23 [ILE] a:715 [U] ❌ 6S0X_k:23 no longer at interface
AK:22 [HIS] AA:708 [C] k:23 [ILE] a:716 [A] ❌ 6S0X_k:23 no longer at interface
AK:85 [MET] AA:708 [C] k:85 [THR] a:716 [A] ❌ 6S0X_k:85 no longer at interface
AK:44 [TRP] AA:685 [G] k:45 [SER] a:693 [G] ❌ 6S0X_k:45 no longer at interface
AK:44 [TRP] AA:686 [U] k:45 [SER] a:694 [U] ❌ 6S0X_k:45 no longer at interface
AK:44 [TRP] AA:687 [A] k:45 [SER] a:695 [A] ❌ 6S0X_k:45 no longer at interface
AK:44 [TRP] AA:688 [G] k:45 [SER] a:696 [G] ❌ 6S0X_k:45 no longer at interface
AK:44 [TRP] AA:704 [A] k:45 [SER] a:712 [A] ❌ 6S0X_k:45 no longer at interface
AK:44 [TRP] AA:705 [G] k:45 [SER] a:713 [G] ❌ 6S0X_k:45 no longer at interface
AK:122 [ARG] AA:778 [G] k:123 [PRO] a:786 [U] ❌ 6S0X_k:123 no longer at interface
AK:122 [ARG] AA:779 [C] k:123 [PRO] a:787 [C] ❌ 6S0X_k:123 no longer at interface
AK:122 [ARG] AA:1524 [C] k:123 [PRO] a:1535 [C] ❌ 6S0X_k:123 no longer at interface
AK:33 [THR] AA:706 [A] k:32 [VAL] a:714 [A] ❌ 6S0X_k:32 no longer at interface
AK:33 [THR] AA:707 [U] k:32 [VAL] a:715 [U] ❌ 6S0X_k:32 no longer at interface
AK:31 [ILE] AA:689 [C] k:30 [THR] a:697 [C] ❌ 6S0X_k:30 no longer at interface
AK:31 [ILE] AA:690 [G] k:30 [THR] a:698 [G] ❌ 6S0X_k:30 no longer at interface
AK:31 [ILE] AA:705 [G] k:30 [THR] a:713 [G] ❌ 6S0X_k:30 no longer at interface
AK:31 [ILE] AA:706 [A] k:30 [THR] a:714 [A] ❌ 6S0X_k:30 no longer at interface
AK:21 [ALA] AA:708 [C] k:22 [HIS] a:716 [A] ❌ 4YBB_AK:21 no longer at interface
AK:21 [ALA] AA:707 [U] k:22 [HIS] a:715 [U] ❌ 4YBB_AK:21 no longer at interface
AK:23 [ILE] AA:707 [U] k:24 [ARG] a:715 [U] ❌ 4YBB_AK:23 no longer at interface
AK:23 [ILE] AA:676 [A] k:24 [ARG] a:684 [A] ❌ 4YBB_AK:23 no longer at interface
AK:23 [ILE] AA:706 [A] k:24 [ARG] a:714 [A] ❌ 4YBB_AK:23 no longer at interface
AK:23 [ILE] AA:677 [U] k:24 [ARG] a:685 [U] ❌ 4YBB_AK:23 no longer at interface
AK:25 [ALA] AA:690 [G] k:26 [THR] a:698 [G] ❌ 4YBB_AK:25 no longer at interface
AK:30 [THR] AA:690 [G] k:29 [ASN] a:698 [G] ❌ 4YBB_AK:30 no longer at interface
AK:30 [THR] AA:689 [C] k:29 [ASN] a:697 [C] ❌ 4YBB_AK:30 no longer at interface
AK:30 [THR] AA:688 [G] k:29 [ASN] a:696 [G] ❌ 4YBB_AK:30 no longer at interface
AK:32 [VAL] AA:689 [C] k:31 [ILE] a:697 [C] ❌ 4YBB_AK:32 no longer at interface
AK:32 [VAL] AA:705 [G] k:31 [ILE] a:713 [G] ❌ 4YBB_AK:32 no longer at interface
AK:32 [VAL] AA:706 [A] k:31 [ILE] a:714 [A] ❌ 4YBB_AK:32 no longer at interface
AK:34 [ILE] AA:707 [U] k:33 [THR] a:715 [U] ❌ 4YBB_AK:34 no longer at interface
AK:34 [ILE] AA:705 [G] k:33 [THR] a:713 [G] ❌ 4YBB_AK:34 no longer at interface
AK:34 [ILE] AA:706 [A] k:33 [THR] a:714 [A] ❌ 4YBB_AK:34 no longer at interface
AK:36 [ASP] AA:683 [G] k:35 [THR] a:691 [G] ❌ 4YBB_AK:36 no longer at interface
AK:36 [ASP] AA:707 [U] k:35 [THR] a:715 [U] ❌ 4YBB_AK:36 no longer at interface
AK:45 [ALA] AA:687 [A] k:46 [SER] a:695 [A] ❌ 4YBB_AK:45 no longer at interface
AK:45 [ALA] AA:689 [C] k:46 [SER] a:697 [C] ❌ 4YBB_AK:45 no longer at interface
AK:45 [ALA] AA:688 [G] k:46 [SER] a:696 [G] ❌ 4YBB_AK:45 no longer at interface
AK:52 [PHE] AA:689 [C] k:52 [PHE] a:697 [C] ❌ 4YBB_AK:52 no longer at interface
AK:58 [SER] AA:692 [U] k:57 [LYS] a:700 [U] ❌ 4YBB_AK:58 no longer at interface
AK:58 [SER] AA:690 [G] k:57 [LYS] a:698 [G] ❌ 4YBB_AK:58 no longer at interface
AK:58 [SER] AA:689 [C] k:57 [LYS] a:697 [C] ❌ 4YBB_AK:58 no longer at interface
AK:58 [SER] AA:691 [G] k:57 [LYS] a:699 [G] ❌ 4YBB_AK:58 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like Bacterial small subunit ribosomal RNA 0.96 4.28 0.32 0.89 0.96 0.65 0.93 0.38 0.28 0.08 0.55


Other pairs involving 4YBB_AK_AA or 6S0X_k_a

Total number of entries: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1k_1a 4YBB_AK_AA 0.62 0.96 3.51 0.4 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4Y4O_1k_1a 6S0X_k_a 0.73 0.95 2.43 0.62 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4YBB_AK_AA 7K00_K_A 0.74 0.98 2.98 0.79 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4YBB_AK_AA 7O7Y_An_A2 0.59 0.9 4.01 0.21 Ribonuclease H-like compare
4YBB_AK_AA 7RYG_k_a 0.92 0.97 1.43 0.97 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4YBB_AK_AA 6S0X_k_a 0.38 0.96 4.28 0.32 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
6S0X_k_a 7O7Y_An_A2 0.73 0.9 4.43 0.24 Ribonuclease H-like compare
6S0X_k_a 7K00_K_A 0.76 0.96 3.11 0.7 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
6S0X_k_a 7RYG_k_a 0.54 0.96 4.13 0.41 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare