RNAprotDB

All interfaces > All interologs > Interface groups > group102 > 6S0X_k_a

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6S0X_k
6S0X_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
k:22 [HIS] a:715 [U] 3.63 a:692 [U] 70.3
k:22 [HIS] a:716 [A] 3.16 a:690 [U] 70.3
k:24 [ARG] a:684 [A] 4.57 a:722 [G] 43.79
k:24 [ARG] a:685 [U] 2.73 a:721 [G] 43.79
k:24 [ARG] a:714 [A] 4.11 a:693 [G] 43.79
k:24 [ARG] a:715 [U] 3.37 a:692 [U] 43.79
k:26 [THR] a:698 [G] 3.96 a:705 [U] 79.37
k:28 [ASN] a:698 [G] 3.42 a:705 [U] 92.43
k:28 [ASN] a:700 [U] 3.78 92.43
k:29 [ASN] a:696 [G] 4.61 a:707 [C] 99.0
k:29 [ASN] a:697 [C] 2.53 a:706 [G] 99.0
k:29 [ASN] a:698 [G] 3.61 a:705 [U] 99.0
k:31 [ILE] a:697 [C] 4.25 a:706 [G] 68.59
k:31 [ILE] a:713 [G] 4.24 68.59
k:31 [ILE] a:714 [A] 3.85 a:693 [G] 68.59
k:33 [THR] a:713 [G] 4.91 75.93
k:33 [THR] a:714 [A] 2.74 a:693 [G] sugar:SC 75.93
k:33 [THR] a:715 [U] 4.42 a:692 [U] 75.93
k:35 [THR] a:691 [G] 4.37 81.52
k:35 [THR] a:715 [U] 4.36 a:692 [U] 81.52
k:38 [PHE] a:716 [A] 4.81 a:690 [U] 51.64
k:38 [PHE] a:717 [U] 4.11 51.64
k:39 [GLY] a:691 [G] 3.14 81.1
k:39 [GLY] a:715 [U] 3.46 a:692 [U] 81.1
k:39 [GLY] a:716 [A] 3.85 a:690 [U] sugar:BB 81.1
k:40 [ASN] a:691 [G] 2.86 base:SC, sugar:BB 46.86
k:40 [ASN] a:692 [U] 2.97 a:715 [U] sugar:BB 46.86
k:40 [ASN] a:715 [U] 4.53 a:692 [U] 46.86
k:41 [ALA] a:691 [G] 3.43 65.94
k:41 [ALA] a:692 [U] 3.0 a:715 [U] sugar:BB 65.94
k:41 [ALA] a:715 [U] 3.28 a:692 [U] 65.94
k:42 [LEU] a:692 [U] 4.16 a:715 [U] 61.11
k:42 [LEU] a:693 [G] 4.24 a:714 [A] 61.11
k:43 [SER] a:692 [U] 4.87 a:715 [U] 0.15
k:44 [TRP] a:692 [U] 3.8 a:715 [U] 2.23
k:44 [TRP] a:693 [G] 3.56 a:714 [A] 2.23
k:44 [TRP] a:694 [U] 3.12 2.23
k:44 [TRP] a:695 [A] 4.44 2.23
k:44 [TRP] a:712 [A] 3.29 2.23
k:44 [TRP] a:713 [G] 3.21 base:SC 2.23
k:44 [TRP] a:714 [A] 3.27 a:693 [G] 2.23
k:46 [SER] a:695 [A] 4.87 96.29
k:46 [SER] a:696 [G] 2.76 a:707 [C] 96.29
k:46 [SER] a:697 [C] 3.23 a:706 [G] 96.29
k:47 [ALA] a:696 [G] 4.77 a:707 [C] 57.19
k:47 [ALA] a:697 [C] 2.89 a:706 [G] 57.19
k:48 [GLY] a:696 [G] 3.39 a:707 [C] 90.8
k:48 [GLY] a:697 [C] 2.47 a:706 [G] 90.8
k:49 [ALA] a:696 [G] 3.74 a:707 [C] 54.6
k:49 [ALA] a:697 [C] 4.44 a:706 [G] 54.6
k:52 [PHE] a:697 [C] 4.97 a:706 [G] 69.85
k:53 [LYS] a:698 [G] 4.36 a:705 [U] 77.3
k:53 [LYS] a:699 [G] 2.84 a:704 [A] base:BB 77.3
k:53 [LYS] a:700 [U] 3.73 77.3
k:53 [LYS] a:703 [A] 4.96 77.3
k:53 [LYS] a:704 [A] 3.96 a:699 [G] 77.3
k:54 [GLY] a:699 [G] 4.63 a:704 [A] 67.57
k:54 [GLY] a:700 [U] 3.36 67.57
k:54 [GLY] a:703 [A] 2.85 67.57
k:54 [GLY] a:704 [A] 4.41 a:699 [G] 67.57
k:55 [SER] a:700 [U] 3.43 64.75
k:55 [SER] a:701 [G] 4.52 a:803 [C] 64.75
k:55 [SER] a:702 [A] 2.87 64.75
k:55 [SER] a:703 [A] 2.84 64.75
k:56 [LYS] a:703 [A] 4.48 67.03
k:57 [LYS] a:697 [C] 3.42 a:706 [G] 85.13
k:57 [LYS] a:698 [G] 3.68 a:705 [U] base:SC 85.13
k:57 [LYS] a:699 [G] 2.79 a:704 [A] base:SC 85.13
k:57 [LYS] a:700 [U] 4.37 85.13
k:115 [PRO] a:683 [A] 3.79 a:723 [A] 50.5
k:115 [PRO] a:684 [A] 3.66 a:722 [G] 50.5
k:116 [VAL] a:683 [A] 3.11 a:723 [A] 57.84
k:116 [VAL] a:726 [A] 4.82 57.84
k:117 [PRO] a:682 [G] 4.08 a:724 [A] 75.88
k:117 [PRO] a:683 [A] 2.98 a:723 [A] 75.88
k:117 [PRO] a:684 [A] 3.64 a:722 [G] 75.88
k:117 [PRO] a:726 [A] 4.56 75.88
k:118 [HIS] a:682 [G] 3.05 a:724 [A] base:BB 79.99
k:118 [HIS] a:683 [A] 4.69 a:723 [A] 79.99
k:118 [HIS] a:724 [A] 4.56 a:682 [G] 79.99
k:118 [HIS] a:725 [C] 2.92 a:681 [G] 79.99
k:118 [HIS] a:726 [A] 2.57 base:SC 79.99
k:118 [HIS] a:727 [C] 4.04 79.99
k:119 [ASN] a:682 [G] 4.73 a:724 [A] 91.7
k:119 [ASN] a:724 [A] 3.22 a:682 [G] sugar:BB 91.7
k:119 [ASN] a:725 [C] 3.58 a:681 [G] 91.7
k:119 [ASN] a:726 [A] 2.91 91.7
k:120 [GLY] a:682 [G] 4.83 a:724 [A] 91.55
k:120 [GLY] a:683 [A] 3.47 a:723 [A] 91.55
k:120 [GLY] a:684 [A] 4.57 a:722 [G] 91.55
k:120 [GLY] a:723 [A] 3.17 a:683 [A] base:BB 91.55
k:120 [GLY] a:724 [A] 3.19 a:682 [G] 91.55
k:121 [CYS] a:722 [G] 4.11 a:684 [A] 73.2
k:121 [CYS] a:723 [A] 4.81 a:683 [A] 73.2
k:121 [CYS] a:724 [A] 4.96 a:682 [G] 73.2
k:121 [CYS] a:785 [A] 3.81 73.2
k:121 [CYS] a:786 [U] 4.14 a:812 [U] 73.2
k:122 [ARG] a:785 [A] 4.61 93.33
k:122 [ARG] a:786 [U] 2.91 a:812 [U] base:BB 93.33
k:122 [ARG] a:787 [C] 4.69 a:811 [G] 93.33
k:124 [PRO] a:786 [U] 4.48 a:812 [U] 52.85
k:124 [PRO] a:787 [C] 3.78 a:811 [G] 52.85
k:125 [LYS] a:787 [C] 4.42 a:811 [G] 88.84
k:125 [LYS] a:788 [A] 4.84 a:810 [A] 88.84
k:125 [LYS] a:1533 [U] 4.28 a:1524 [A] 88.84
k:125 [LYS] a:1534 [G] 2.6 a:1523 [U] 88.84
k:125 [LYS] a:1535 [C] 4.05 a:1522 [G] 88.84
k:127 [ARG] a:700 [U] 2.94 88.54
k:127 [ARG] a:701 [G] 4.06 a:803 [C] 88.54
k:127 [ARG] a:804 [C] 3.55 a:794 [G] 88.54
k:127 [ARG] a:805 [C] 3.16 a:793 [G] 88.54
k:128 [ARG] a:803 [C] 3.61 a:701 [G] 97.97
k:128 [ARG] a:804 [C] 2.91 a:794 [G] 97.97
k:128 [ARG] a:1533 [U] 3.36 a:1524 [A] 97.97
k:128 [ARG] a:1534 [G] 3.32 a:1523 [U] 97.97

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group102 6S0X_k_a k: 30s ribosomal protein s11, Staphylococcus aureus (natural) a: 16s ribosomal RNA, Staphylococcus aureus (natural) A0A077UKD6 Ribonuclease H-like Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1k_1a 6S0X_k_a 0.73 0.95 2.43 0.62 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
4YBB_AK_AA 6S0X_k_a 0.38 0.96 4.28 0.32 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
6S0X_k_a 7O7Y_An_A2 0.73 0.9 4.43 0.24 Ribonuclease H-like compare
6S0X_k_a 7K00_K_A 0.76 0.96 3.11 0.7 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare
6S0X_k_a 7RYG_k_a 0.54 0.96 4.13 0.41 Ribonuclease H-like Bacterial small subunit ribosomal RNA compare