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All interfaces > All interologs > Interface groups > group102 > 7O7Y_An_A2

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_An
7O7Y_A2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
An:32 [HIS] A2:976 [G] 3.32 A2:952 [C] 70.46
An:32 [HIS] A2:977 [G] 3.92 A2:951 [C] 70.46
An:34 [PHE] A2:975 [C] 3.98 A2:953 [G] 34.8
An:36 [SER] A2:959 [G] 4.32 A2:966 [U] 84.35
An:38 [ASN] A2:959 [G] 4.57 A2:966 [U] 98.74
An:38 [ASN] A2:960 [G] 2.94 A2:965 [A] 98.74
An:38 [ASN] A2:961 [U] 2.97 98.74
An:39 [ASP] A2:957 [G] 4.91 A2:968 [C] 98.92
An:39 [ASP] A2:958 [A] 2.7 A2:967 [PSU] 98.92
An:39 [ASP] A2:959 [G] 3.15 A2:966 [U] 98.92
An:41 [PHE] A2:958 [A] 3.63 A2:967 [PSU] 74.18
An:41 [PHE] A2:959 [G] 3.67 A2:966 [U] 74.18
An:41 [PHE] A2:974 [C] 3.28 74.18
An:41 [PHE] A2:975 [C] 3.5 A2:953 [G] 74.18
An:43 [HIS] A2:953 [G] 3.62 A2:975 [C] 79.46
An:43 [HIS] A2:975 [C] 2.86 A2:953 [G] sugar:SC 79.46
An:43 [HIS] A2:976 [G] 3.1 A2:952 [C] 79.46
An:45 [THR] A2:976 [G] 3.74 A2:952 [C] 92.73
An:48 [SER] A2:977 [G] 3.54 A2:951 [C] 48.29
An:49 [GLY] A2:976 [G] 2.58 A2:952 [C] sugar:BB 94.92
An:49 [GLY] A2:977 [G] 3.14 A2:951 [C] 94.92
An:50 [LYS] A2:952 [C] 3.3 A2:976 [G] 66.69
An:50 [LYS] A2:953 [G] 3.38 A2:975 [C] 66.69
An:50 [LYS] A2:976 [G] 2.93 A2:952 [C] base:BB 66.69
An:50 [LYS] A2:977 [G] 3.59 A2:951 [C] 66.69
An:51 [GLU] A2:952 [C] 4.91 A2:976 [G] 72.9
An:51 [GLU] A2:953 [G] 3.22 A2:975 [C] 72.9
An:51 [GLU] A2:954 [C] 4.93 72.9
An:52 [THR] A2:953 [G] 3.08 A2:975 [C] sugar:BB 64.19
An:52 [THR] A2:954 [C] 2.87 sugar:SC 64.19
An:52 [THR] A2:976 [G] 4.56 A2:952 [C] 64.19
An:53 [ILE] A2:954 [C] 4.98 25.53
An:55 [ARG] A2:953 [G] 3.78 A2:975 [C] 15.71
An:55 [ARG] A2:954 [C] 2.86 base:SC, base:SC 15.71
An:55 [ARG] A2:955 [U] 3.62 A2:973 [A] 15.71
An:55 [ARG] A2:973 [A] 3.77 A2:955 [U] 15.71
An:55 [ARG] A2:974 [C] 3.68 15.71
An:55 [ARG] A2:975 [C] 3.27 A2:953 [G] 15.71
An:57 [THR] A2:957 [G] 3.37 A2:968 [C] 80.76
An:57 [THR] A2:958 [A] 2.49 A2:967 [PSU] 80.76
An:58 [GLY] A2:958 [A] 4.49 A2:967 [PSU] 61.73
An:59 [GLY] A2:957 [G] 3.94 A2:968 [C] 61.89
An:59 [GLY] A2:958 [A] 3.25 A2:967 [PSU] 61.89
An:60 [MET] A2:956 [A] 3.72 A2:972 [G] 19.31
An:60 [MET] A2:957 [G] 3.33 A2:968 [C] 19.31
An:60 [MET] A2:958 [A] 4.07 A2:967 [PSU] 19.31
An:64 [ALA] A2:964 [A] 4.37 63.74
An:65 [ASP] A2:959 [G] 3.55 A2:966 [U] 52.23
An:65 [ASP] A2:960 [G] 3.17 A2:965 [A] base:SC 52.23
An:65 [ASP] A2:961 [U] 3.4 52.23
An:65 [ASP] A2:964 [A] 3.22 52.23
An:65 [ASP] A2:965 [A] 3.23 A2:960 [G] 52.23
An:66 [ARG] A2:961 [U] 4.08 71.96
An:66 [ARG] A2:962 [G] 4.35 71.96
An:66 [ARG] A2:963 [A] 3.47 71.96
An:66 [ARG] A2:964 [A] 2.99 71.96
An:68 [GLU] A2:958 [A] 4.16 A2:967 [PSU] 76.88
An:68 [GLU] A2:959 [G] 4.32 A2:966 [U] 76.88
An:68 [GLU] A2:960 [G] 3.25 A2:965 [A] base:SC 76.88
An:98 [ARG] A2:975 [C] 4.45 A2:953 [G] 78.14
An:98 [ARG] A2:976 [G] 3.06 A2:952 [C] 78.14
An:100 [THR] A2:946 [U] 4.64 A2:982 [A] 34.97
An:101 [GLY] A2:946 [U] 4.96 A2:982 [A] 83.54
An:102 [GLY] A2:945 [A] 3.49 A2:983 [G] 81.26
An:102 [GLY] A2:946 [U] 4.24 A2:982 [A] 81.26
An:103 [ASN] A2:945 [A] 4.42 A2:983 [G] 65.3
An:103 [ASN] A2:1047 [PSU] 4.45 A2:1073 [U] 65.3
An:104 [ARG] A2:959 [G] 4.84 A2:966 [U] 58.56
An:104 [ARG] A2:960 [G] 2.54 A2:965 [A] 58.56
An:134 [PRO] A2:945 [A] 3.6 A2:983 [G] 78.56
An:134 [PRO] A2:946 [U] 3.98 A2:982 [A] 78.56
An:135 [ILE] A2:944 [U] 2.2 A2:984 [A] sugar:BB 49.75
An:135 [ILE] A2:945 [A] 3.89 A2:983 [G] 49.75
An:135 [ILE] A2:987 [G] 3.31 49.75
An:136 [PRO] A2:944 [U] 3.47 A2:984 [A] 79.65
An:136 [PRO] A2:945 [A] 3.37 A2:983 [G] 79.65
An:136 [PRO] A2:987 [G] 3.56 79.65
An:137 [SER] A2:943 [G] 2.82 A2:985 [C] base:BB, base:SC, base:SC 87.0
An:137 [SER] A2:944 [U] 2.83 A2:984 [A] base:BB 87.0
An:137 [SER] A2:945 [A] 4.9 A2:983 [G] 87.0
An:137 [SER] A2:985 [C] 4.64 A2:943 [G] 87.0
An:137 [SER] A2:986 [G] 3.91 A2:942 [C] 87.0
An:137 [SER] A2:987 [G] 3.36 87.0
An:138 [ASP] A2:943 [G] 3.44 A2:985 [C] base:BB 88.26
An:138 [ASP] A2:944 [U] 3.97 A2:984 [A] 88.26
An:138 [ASP] A2:984 [A] 4.73 A2:944 [U] 88.26
An:138 [ASP] A2:985 [C] 3.02 A2:943 [G] base:BB 88.26
An:138 [ASP] A2:986 [G] 3.13 A2:942 [C] 88.26
An:138 [ASP] A2:987 [G] 3.07 88.26
An:139 [SER] A2:945 [A] 3.76 A2:983 [G] 88.52
An:139 [SER] A2:984 [A] 4.05 A2:944 [U] 88.52
An:139 [SER] A2:985 [C] 3.5 A2:943 [G] sugar:BB 88.52
An:140 [THR] A2:945 [A] 4.28 A2:983 [G] 56.38
An:140 [THR] A2:946 [U] 3.89 A2:982 [A] 56.38
An:140 [THR] A2:983 [G] 3.49 A2:945 [A] 56.38
An:140 [THR] A2:984 [A] 3.95 A2:944 [U] 56.38
An:140 [THR] A2:1046 [PSU] 3.7 56.38
An:140 [THR] A2:1047 [PSU] 3.16 A2:1073 [U] 56.38
An:141 [ARG] A2:1047 [PSU] 2.79 A2:1073 [U] sugar:BB 90.72
An:141 [ARG] A2:1048 [C] 3.26 A2:1072 [G] sugar:SC 90.72
An:141 [ARG] A2:1857 [C] 2.96 A2:1844 [G] 90.72
An:141 [ARG] A2:1858 [G] 2.98 A2:1843 [4AC] 90.72
An:142 [ARG] A2:1047 [PSU] 4.94 A2:1073 [U] 63.77
An:142 [ARG] A2:1048 [C] 3.91 A2:1072 [G] 63.77
An:143 [LYS] A2:1048 [C] 3.33 A2:1072 [G] 59.47
An:143 [LYS] A2:1049 [G] 3.68 A2:1071 [A] 59.47
An:143 [LYS] A2:1066 [G] 3.29 A2:1054 [C] 59.47
An:143 [LYS] A2:1067 [U] 3.08 A2:1053 [A] 59.47
An:144 [GLY] A2:1048 [C] 3.63 A2:1072 [G] 86.87
An:144 [GLY] A2:1049 [G] 2.8 A2:1071 [A] 86.87
An:144 [GLY] A2:1856 [G] 4.12 A2:1845 [U] 86.87
An:145 [GLY] A2:1048 [C] 4.56 A2:1072 [G] 33.19
An:145 [GLY] A2:1049 [G] 3.71 A2:1071 [A] 33.19
An:145 [GLY] A2:1856 [G] 4.47 A2:1845 [U] 33.19
An:145 [GLY] A2:1857 [C] 3.39 A2:1844 [G] 33.19
An:146 [ARG] A2:1857 [C] 2.93 A2:1844 [G] 93.56
An:146 [ARG] A2:1858 [G] 2.93 A2:1843 [4AC] base/AA stacks 93.56
An:146 [ARG] A2:1859 [G] 3.0 A2:1842 [C] base:SC 93.56
An:147 [ARG] A2:1839 [U] 4.87 91.79
An:147 [ARG] A2:1854 [C] 4.75 A2:1847 [G] 91.79
An:147 [ARG] A2:1855 [U] 2.82 A2:1846 [A] 91.79
An:147 [ARG] A2:1856 [G] 2.74 A2:1845 [U] 91.79
An:147 [ARG] A2:1857 [C] 4.6 A2:1844 [G] 91.79
An:148 [GLY] A2:1065 [C] 3.81 A2:1055 [G] 57.98
An:149 [ARG] A2:961 [U] 2.9 87.74
An:149 [ARG] A2:962 [G] 3.14 87.74
An:149 [ARG] A2:1065 [C] 2.85 A2:1055 [G] sugar:SC 87.74
An:149 [ARG] A2:1066 [G] 2.87 A2:1054 [C] 87.74
An:150 [ARG] A2:1064 [C] 2.79 A2:1056 [A] sugar:BB 94.48
An:150 [ARG] A2:1065 [C] 2.82 A2:1055 [G] 94.48
An:150 [ARG] A2:1839 [U] 2.7 base:SC 94.48
An:150 [ARG] A2:1840 [U] 4.83 A2:1861 [A] 94.48
An:150 [ARG] A2:1855 [U] 2.73 A2:1846 [A] 94.48
An:150 [ARG] A2:1856 [G] 3.6 A2:1845 [U] 94.48
An:151 [LEU] A2:962 [G] 3.54 89.12
An:151 [LEU] A2:1065 [C] 4.28 A2:1055 [G] 89.12
An:151 [LEU] A2:1839 [U] 4.28 89.12
An:151 [LEU] A2:1840 [U] 4.34 A2:1861 [A] 89.12

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group102 7O7Y_An_A2 An: 40s ribosomal protein us11, Oryctolagus cuniculus (natural) A2: 18s rRNA, Oryctolagus cuniculus (natural) G1T1F0 Ribonuclease H-like Eukaryotic small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4YBB_AK_AA 7O7Y_An_A2 0.59 0.9 4.01 0.21 Ribonuclease H-like compare
4Y4O_1k_1a 7O7Y_An_A2 0.80 0.93 2.71 0.26 Ribonuclease H-like compare
7K00_K_A 7O7Y_An_A2 0.86 0.92 2.19 0.32 Ribonuclease H-like compare
6S0X_k_a 7O7Y_An_A2 0.73 0.9 4.43 0.24 Ribonuclease H-like compare