Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
Focus on
InterfaceRNA
Protein
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Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7RYG_k
|
7RYG_a
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| k:21 [HIS] | a:704 [U] | 3.95 | a:680 [G] | 67.11 | ||
| k:23 [HIS] | a:703 [A] | 4.35 | a:681 [U] | 27.86 | ||
| k:23 [HIS] | a:704 [U] | 4.39 | a:680 [G] | 27.86 | ||
| k:25 [SER] | a:687 [G] | 4.49 | a:694 [U] | 85.7 | ||
| k:27 [ASN] | a:687 [G] | 4.91 | a:694 [U] | 96.09 | ||
| k:27 [ASN] | a:688 [G] | 2.96 | a:693 [A] | base/AA stacks | 96.09 | |
| k:27 [ASN] | a:689 [U] | 2.82 | base:SC | 96.09 | ||
| k:28 [ASN] | a:686 [C] | 2.94 | a:695 [G] | 99.0 | ||
| k:28 [ASN] | a:687 [G] | 3.29 | a:694 [U] | 99.0 | ||
| k:30 [ILE] | a:686 [C] | 4.74 | a:695 [G] | 76.08 | ||
| k:30 [ILE] | a:687 [G] | 4.48 | a:694 [U] | 76.08 | ||
| k:30 [ILE] | a:702 [G] | 4.47 | a:682 [G] | 76.08 | ||
| k:32 [THR] | a:703 [A] | 3.48 | a:681 [U] | 70.63 | ||
| k:32 [THR] | a:704 [U] | 4.98 | a:680 [G] | 70.63 | ||
| k:37 [GLN] | a:705 [C] | 4.01 | a:679 [G] | 46.74 | ||
| k:38 [GLY] | a:680 [G] | 3.43 | a:704 [U] | base:BB | 81.31 | |
| k:38 [GLY] | a:704 [U] | 3.62 | a:680 [G] | 81.31 | ||
| k:38 [GLY] | a:705 [C] | 4.25 | a:679 [G] | 81.31 | ||
| k:39 [ASN] | a:680 [G] | 4.1 | a:704 [U] | 54.02 | ||
| k:39 [ASN] | a:681 [U] | 3.47 | a:703 [A] | 54.02 | ||
| k:40 [ALA] | a:680 [G] | 4.81 | a:704 [U] | 56.29 | ||
| k:40 [ALA] | a:681 [U] | 2.37 | a:703 [A] | base:BB, sugar:BB | 56.29 | |
| k:40 [ALA] | a:682 [G] | 4.16 | a:702 [G] | 56.29 | ||
| k:40 [ALA] | a:703 [A] | 4.42 | a:681 [U] | 56.29 | ||
| k:41 [LEU] | a:681 [U] | 4.61 | a:703 [A] | 54.87 | ||
| k:41 [LEU] | a:682 [G] | 4.5 | a:702 [G] | 54.87 | ||
| k:43 [TRP] | a:682 [G] | 4.85 | a:702 [G] | 0.0 | ||
| k:43 [TRP] | a:683 [U] | 3.52 | a:701 [A] | sugar:SC | 0.0 | |
| k:43 [TRP] | a:684 [A] | 3.84 | a:700 [G] | 0.0 | ||
| k:43 [TRP] | a:685 [G] | 4.19 | a:696 [C] | 0.0 | ||
| k:43 [TRP] | a:701 [A] | 3.99 | a:683 [U] | 0.0 | ||
| k:43 [TRP] | a:702 [G] | 4.07 | a:682 [G] | 0.0 | ||
| k:45 [THR] | a:685 [G] | 3.54 | a:696 [C] | 95.72 | ||
| k:45 [THR] | a:686 [C] | 3.18 | a:695 [G] | 95.72 | ||
| k:46 [SER] | a:686 [C] | 4.57 | a:695 [G] | 62.97 | ||
| k:47 [GLY] | a:685 [G] | 4.26 | a:696 [C] | 88.59 | ||
| k:47 [GLY] | a:686 [C] | 4.07 | a:695 [G] | 88.59 | ||
| k:48 [GLY] | a:685 [G] | 3.36 | a:696 [C] | 54.66 | ||
| k:52 [ARG] | a:692 [A] | 4.77 | 79.1 | |||
| k:53 [GLY] | a:688 [G] | 4.59 | a:693 [A] | 62.0 | ||
| k:53 [GLY] | a:689 [U] | 4.54 | 62.0 | |||
| k:53 [GLY] | a:692 [A] | 3.31 | 62.0 | |||
| k:54 [SER] | a:689 [U] | 3.85 | 72.59 | |||
| k:54 [SER] | a:690 [G] | 4.97 | 72.59 | |||
| k:54 [SER] | a:691 [A] | 2.99 | 72.59 | |||
| k:54 [SER] | a:692 [A] | 3.14 | 72.59 | |||
| k:56 [LYS] | a:686 [C] | 4.19 | a:695 [G] | 82.81 | ||
| k:56 [LYS] | a:687 [G] | 4.02 | a:694 [U] | 82.81 | ||
| k:56 [LYS] | a:688 [G] | 3.14 | a:693 [A] | base:SC | 82.81 | |
| k:86 [LYS] | a:704 [U] | 3.68 | a:680 [G] | 66.32 | ||
| k:114 [PRO] | a:673 [A] | 3.51 | a:711 [G] | 45.48 | ||
| k:114 [PRO] | a:674 [U] | 4.65 | a:710 [G] | 45.48 | ||
| k:115 [ILE] | a:672 [A] | 2.71 | a:712 [A] | sugar:BB | 51.58 | |
| k:115 [ILE] | a:673 [A] | 4.75 | a:711 [G] | 51.58 | ||
| k:115 [ILE] | a:715 [A] | 4.7 | 51.58 | |||
| k:116 [PRO] | a:672 [A] | 3.6 | a:712 [A] | 75.0 | ||
| k:116 [PRO] | a:673 [A] | 3.7 | a:711 [G] | 75.0 | ||
| k:116 [PRO] | a:715 [A] | 3.99 | 75.0 | |||
| k:117 [HIS] | a:671 [G] | 3.48 | a:713 [A] | base:BB | 78.45 | |
| k:117 [HIS] | a:672 [A] | 3.2 | a:712 [A] | base:BB | 78.45 | |
| k:117 [HIS] | a:713 [A] | 4.08 | a:671 [G] | 78.45 | ||
| k:117 [HIS] | a:714 [U] | 4.15 | a:670 [A] | 78.45 | ||
| k:117 [HIS] | a:715 [A] | 3.24 | base/AA stacks | 78.45 | ||
| k:118 [ASN] | a:672 [A] | 4.51 | a:712 [A] | 90.78 | ||
| k:118 [ASN] | a:713 [A] | 2.9 | a:671 [G] | base:BB | 90.78 | |
| k:118 [ASN] | a:714 [U] | 3.57 | a:670 [A] | 90.78 | ||
| k:118 [ASN] | a:715 [A] | 3.3 | 90.78 | |||
| k:119 [GLY] | a:672 [A] | 3.59 | a:712 [A] | 89.7 | ||
| k:119 [GLY] | a:673 [A] | 4.86 | a:711 [G] | 89.7 | ||
| k:119 [GLY] | a:712 [A] | 4.04 | a:672 [A] | 89.7 | ||
| k:119 [GLY] | a:713 [A] | 3.87 | a:671 [G] | 89.7 | ||
| k:120 [CYS] | a:673 [A] | 3.98 | a:711 [G] | 75.89 | ||
| k:120 [CYS] | a:674 [U] | 4.02 | a:710 [G] | 75.89 | ||
| k:120 [CYS] | a:711 [G] | 3.27 | a:673 [A] | 75.89 | ||
| k:120 [CYS] | a:712 [A] | 4.71 | a:672 [A] | 75.89 | ||
| k:120 [CYS] | a:774 [A] | 3.88 | 75.89 | |||
| k:120 [CYS] | a:775 [G] | 4.11 | a:801 [U] | 75.89 | ||
| k:121 [ARG] | a:775 [G] | 2.75 | a:801 [U] | sugar:BB | 92.44 | |
| k:121 [ARG] | a:776 [C] | 3.87 | a:800 [G] | 92.44 | ||
| k:121 [ARG] | a:1521 [C] | 3.32 | a:1508 [G] | 92.44 | ||
| k:121 [ARG] | a:1522 [G] | 3.58 | a:1507 [C] | 92.44 | ||
| k:122 [PRO] | a:775 [G] | 4.9 | a:801 [U] | 58.52 | ||
| k:122 [PRO] | a:776 [C] | 3.92 | a:800 [G] | 58.52 | ||
| k:123 [PRO] | a:776 [C] | 3.7 | a:800 [G] | 57.66 | ||
| k:123 [PRO] | a:777 [A] | 4.23 | a:799 [A] | 57.66 | ||
| k:124 [LYS] | a:776 [C] | 4.15 | a:800 [G] | 91.99 | ||
| k:124 [LYS] | a:777 [A] | 3.61 | a:799 [A] | 91.99 | ||
| k:124 [LYS] | a:778 [A] | 2.87 | a:798 [U] | 91.99 | ||
| k:124 [LYS] | a:1519 [U] | 4.04 | a:1510 [A] | 91.99 | ||
| k:124 [LYS] | a:1520 [G] | 2.89 | a:1509 [U] | 91.99 | ||
| k:125 [LYS] | a:793 [C] | 4.41 | a:783 [G] | 36.08 | ||
| k:126 [ARG] | a:689 [U] | 3.43 | 91.94 | |||
| k:126 [ARG] | a:690 [G] | 3.41 | 91.94 | |||
| k:126 [ARG] | a:793 [C] | 3.42 | a:783 [G] | 91.94 | ||
| k:126 [ARG] | a:794 [C] | 2.98 | a:782 [G] | 91.94 | ||
| k:127 [ARG] | a:792 [C] | 2.66 | a:784 [A] | sugar:BB | 97.67 | |
| k:127 [ARG] | a:793 [C] | 3.52 | a:783 [G] | 97.67 | ||
| k:127 [ARG] | a:1503 [U] | 2.95 | base:SC | 97.67 | ||
| k:127 [ARG] | a:1519 [U] | 3.09 | a:1510 [A] | 97.67 | ||
| k:127 [ARG] | a:1520 [G] | 3.53 | a:1509 [U] | 97.67 | ||
| k:128 [VAL] | a:690 [G] | 4.46 | 57.08 | |||
| k:128 [VAL] | a:792 [C] | 4.88 | a:784 [A] | 57.08 | ||
| k:128 [VAL] | a:793 [C] | 3.82 | a:783 [G] | 57.08 | ||
| k:128 [VAL] | a:1503 [U] | 5.0 | 57.08 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group102 | 7RYG_k_a | k: 30s ribosomal protein s11, Acinetobacter baumannii ab0057 (natural) a: 16s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) | A0A4R0F9S8 | Ribonuclease H-like | Bacterial small subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 4
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4YBB_AK_AA | 7RYG_k_a | 0.92 | 0.97 | 1.43 | 0.97 | Ribonuclease H-like | Bacterial small subunit ribosomal RNA | compare |
| 4Y4O_1k_1a | 7RYG_k_a | 0.83 | 0.92 | 2.81 | 0.62 | Ribonuclease H-like | Bacterial small subunit ribosomal RNA | compare |
| 7K00_K_A | 7RYG_k_a | 0.93 | 0.93 | 2.33 | 0.95 | Ribonuclease H-like | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_k_a | 7RYG_k_a | 0.54 | 0.96 | 4.13 | 0.41 | Ribonuclease H-like | Bacterial small subunit ribosomal RNA | compare |