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All interfaces > All interologs > Interface groups > group103 > 4Y4O_1n_1a vs 7O7Y_AG_A2

Interface analysis


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Common contacts -

4Y4O_1n
4Y4O_1a
7O7Y_AG
7O7Y_A2
Conserved?
1n:20 [ALA] 1a:980 [C] AG:17 [GLY] A2:1263 [C] ✔
1n:30 [ALA] 1a:981 [U] AG:27 [ARG] A2:1264 [U] ✔
1n:41 [ARG] 1a:973 [G] AG:40 [ARG] A2:1256 [G] ✔
1n:41 [ARG] 1a:974 [A] AG:40 [ARG] A2:1257 [G] ✔
1n:60 [SER] 1a:1114 [C] AG:56 [ASP] A2:1392 [OMC] ✔
1n:60 [SER] 1a:1186 [G] AG:56 [ASP] A2:1480 [G] ✔
1n:60 [SER] 1a:1187 [G] AG:56 [ASP] A2:1481 [A] ✔
1n:60 [SER] 1a:1188 [A] AG:56 [ASP] A2:1482 [G] ✔
1n:46 [GLU] 1a:1202 [G] AG:45 [GLN] A2:1496 [G] ✔
1n:42 [ILE] 1a:1202 [G] AG:41 [GLN] A2:1496 [G] ✔
1n:34 [TYR] 1a:1358 [U] AG:31 [ILE] A2:1660 [U] ✔
1n:16 [PHE] 1a:1317 [C] AG:11 [PRO] A2:1619 [C] ✔
1n:33 [VAL] 1a:1358 [U] AG:30 [LEU] A2:1660 [U] ✔
1n:17 [LYS] 1a:1317 [C] AG:13 [LYS] A2:1619 [C] ✔
1n:43 [CYS] 1a:1202 [G] AG:42 [CYS] A2:1496 [G] ✔
1n:15 [LYS] 1a:1218 [C] AG:10 [HIS] A2:1514 [C] ✔
1n:15 [LYS] 1a:1219 [U] AG:10 [HIS] A2:1515 [G] ✔
1n:19 [ARG] 1a:979 [C] AG:15 [GLY] A2:1262 [C] ✔
1n:19 [ARG] 1a:980 [C] AG:15 [GLY] A2:1263 [C] ✔
1n:29 [ARG] 1a:1202 [G] AG:26 [ASN] A2:1496 [G] ✔
1n:22 [THR] 1a:1359 [C] AG:19 [ARG] A2:1661 [C] ✔
1n:35 [ARG] 1a:1358 [U] AG:32 [ARG] A2:1660 [U] ✔
1n:35 [ARG] 1a:1359 [C] AG:32 [ARG] A2:1661 [C] ✔
1n:35 [ARG] 1a:1360 [A] AG:32 [ARG] A2:1662 [A] ✔
1n:27 [CYS] 1a:1202 [G] AG:24 [CYS] A2:1496 [G] ✔
1n:27 [CYS] 1a:1203 [C] AG:24 [CYS] A2:1497 [U] ✔
1n:59 [ALA] 1a:1188 [A] AG:55 [LEU] A2:1482 [G] ✔
1n:21 [TYR] 1a:980 [C] AG:18 [SER] A2:1263 [C] ✔
1n:58 [LYS] 1a:1188 [A] AG:54 [LYS] A2:1482 [G] ✔
1n:58 [LYS] 1a:1189 [C] AG:54 [LYS] A2:1483 [C] ✔
1n:45 [ARG] 1a:1059 [C] AG:44 [ARG] A2:1337 [C] ✔
1n:32 [SER] 1a:974 [A] AG:29 [GLY] A2:1257 [G] ✔
1n:32 [SER] 1a:975 [A] AG:29 [GLY] A2:1258 [G] ✔
1n:18 [VAL] 1a:979 [C] AG:14 [PHE] A2:1262 [C] ✔
1n:18 [VAL] 1a:980 [C] AG:14 [PHE] A2:1263 [C] ✔
1n:18 [VAL] 1a:1316 [G] AG:14 [PHE] A2:1618 [G] ✔
1n:18 [VAL] 1a:1317 [C] AG:14 [PHE] A2:1619 [C] ✔
1n:18 [VAL] 1a:1318 [A] AG:14 [PHE] A2:1620 [A] ✔
1n:18 [VAL] 1a:1360 [A] AG:14 [PHE] A2:1662 [A] ✔
1n:31 [ARG] 1a:974 [A] AG:28 [HIS] A2:1257 [G] ✔
1n:31 [ARG] 1a:982 [U] AG:28 [HIS] A2:1265 [C] ✔
1n:20 [ALA] 1a:1360 [A] AG:17 [GLY] A2:1662 [A] ❌ 7O7Y_AG_A2
1n:30 [ALA] 1a:982 [U] AG:27 [ARG] A2:1265 [C] ❌ 7O7Y_AG_A2
1n:23 [ARG] 1a:981 [U] AG:20 [SER] A2:1264 [U] ❌ 7O7Y_AG_A2
1n:23 [ARG] 1a:982 [U] AG:20 [SER] A2:1265 [C] ❌ 7O7Y_AG_A2
1n:34 [TYR] 1a:975 [A] AG:31 [ILE] A2:1258 [G] ❌ 7O7Y_AG_A2
1n:34 [TYR] 1a:1357 [A] AG:31 [ILE] A2:1659 [G] ❌ 7O7Y_AG_A2
1n:16 [PHE] 1a:1219 [U] AG:11 [PRO] A2:1515 [G] ❌ 7O7Y_AG_A2
1n:33 [VAL] 1a:1359 [C] AG:30 [LEU] A2:1661 [C] ❌ 7O7Y_AG_A2
1n:17 [LYS] 1a:1257 [U] AG:13 [LYS] A2:1558 [C] ❌ 7O7Y_AG_A2
1n:17 [LYS] 1a:1316 [G] AG:13 [LYS] A2:1618 [G] ❌ 7O7Y_AG_A2
1n:15 [LYS] 1a:1015 [A] AG:10 [HIS] A2:1301 [U] ❌ 7O7Y_AG_A2
1n:15 [LYS] 1a:1016 [A] AG:10 [HIS] A2:1302 [A] ❌ 7O7Y_AG_A2
1n:19 [ARG] 1a:1218 [C] AG:15 [GLY] A2:1514 [C] ❌ 7O7Y_AG_A2
1n:19 [ARG] 1a:1219 [U] AG:15 [GLY] A2:1515 [G] ❌ 7O7Y_AG_A2
1n:19 [ARG] 1a:1317 [C] AG:15 [GLY] A2:1619 [C] ❌ 7O7Y_AG_A2
1n:29 [ARG] 1a:973 [G] AG:26 [ASN] A2:1256 [G] ❌ 7O7Y_AG_A2
1n:29 [ARG] 1a:974 [A] AG:26 [ASN] A2:1257 [G] ❌ 7O7Y_AG_A2
1n:22 [THR] 1a:1358 [U] AG:19 [ARG] A2:1660 [U] ❌ 7O7Y_AG_A2
1n:21 [TYR] 1a:981 [U] AG:18 [SER] A2:1264 [U] ❌ 7O7Y_AG_A2
1n:31 [ARG] 1a:977 [A] AG:28 [HIS] A2:1260 [A] ❌ 7O7Y_AG_A2
1n:15 [LYS] 1a:1317 [C] AG:10 [HIS] A2:1619 [C] ❌ 4Y4O_1n_1a
1n:15 [LYS] 1a:979 [C] AG:10 [HIS] A2:1262 [C] ❌ 4Y4O_1n_1a
1n:15 [LYS] 1a:980 [C] AG:10 [HIS] A2:1263 [C] ❌ 4Y4O_1n_1a
1n:16 [PHE] 1a:979 [C] AG:11 [PRO] A2:1262 [C] ❌ 4Y4O_1n_1a
1n:19 [ARG] 1a:1360 [A] AG:15 [GLY] A2:1662 [A] ❌ 4Y4O_1n_1a
1n:20 [ALA] 1a:981 [U] AG:17 [GLY] A2:1264 [U] ❌ 4Y4O_1n_1a
1n:22 [THR] 1a:1360 [A] AG:19 [ARG] A2:1662 [A] ❌ 4Y4O_1n_1a
1n:22 [THR] 1a:1257 [U] AG:19 [ARG] A2:1558 [C] ❌ 4Y4O_1n_1a
1n:29 [ARG] 1a:1203 [C] AG:26 [ASN] A2:1497 [U] ❌ 4Y4O_1n_1a
1n:29 [ARG] 1a:1049 [U] AG:26 [ASN] A2:1327 [OMU] ❌ 4Y4O_1n_1a
1n:31 [ARG] 1a:981 [U] AG:28 [HIS] A2:1264 [U] ❌ 4Y4O_1n_1a
1n:31 [ARG] 1a:1049 [U] AG:28 [HIS] A2:1327 [OMU] ❌ 4Y4O_1n_1a
1n:33 [VAL] 1a:1357 [A] AG:30 [LEU] A2:1659 [G] ❌ 4Y4O_1n_1a
1n:33 [VAL] 1a:974 [A] AG:30 [LEU] A2:1257 [G] ❌ 4Y4O_1n_1a
1n:34 [TYR] 1a:974 [A] AG:31 [ILE] A2:1257 [G] ❌ 4Y4O_1n_1a
1n:35 [ARG] 1a:1357 [A] AG:32 [ARG] A2:1659 [G] ❌ 4Y4O_1n_1a
1n:35 [ARG] 1a:1257 [U] AG:32 [ARG] A2:1558 [C] ❌ 4Y4O_1n_1a
1n:42 [ILE] 1a:973 [G] AG:41 [GLN] A2:1256 [G] ❌ 4Y4O_1n_1a
1n:42 [ILE] 1a:974 [A] AG:41 [GLN] A2:1257 [G] ❌ 4Y4O_1n_1a
1n:46 [GLU] 1a:1203 [C] AG:45 [GLN] A2:1497 [U] ❌ 4Y4O_1n_1a
1n:59 [ALA] 1a:1187 [G] AG:55 [LEU] A2:1481 [A] ❌ 4Y4O_1n_1a
1n:59 [ALA] 1a:1114 [C] AG:55 [LEU] A2:1392 [OMC] ❌ 4Y4O_1n_1a
1n:60 [SER] 1a:1115 [C] AG:56 [ASP] A2:1393 [U] ❌ 7O7Y_A2:1393 no longer at interface
1n:46 [GLU] 1a:1058 [G] AG:45 [GLN] A2:1336 [G] ❌ 7O7Y_A2:1336 no longer at interface
1n:33 [VAL] 1a:976 [G] AG:30 [LEU] A2:1259 [A] ❌ 7O7Y_A2:1259 no longer at interface
1n:19 [ARG] 1a:1220 [G] AG:15 [GLY] A2:1516 [G] ❌ 7O7Y_A2:1516 no longer at interface
1n:32 [SER] 1a:976 [G] AG:29 [GLY] A2:1259 [A] ❌ 7O7Y_A2:1259 no longer at interface
1n:31 [ARG] 1a:976 [G] AG:28 [HIS] A2:1259 [A] ❌ 7O7Y_A2:1259 no longer at interface
1n:59 [ALA] 1a:1113 [C] AG:55 [LEU] A2:1391 [U] ❌ 4Y4O_1a:1113 no longer at interface
1n:26 [ARG] 1a:1202 [G] AG:23 [VAL] A2:1496 [G] ❌ 7O7Y_AG:23 no longer at interface
1n:28 [GLY] 1a:1202 [G] AG:25 [SER] A2:1496 [G] ❌ 7O7Y_AG:25 no longer at interface
1n:36 [PHE] 1a:1358 [U] AG:35 [GLY] A2:1660 [U] ❌ 7O7Y_AG:35 no longer at interface
1n:40 [CYS] 1a:1202 [G] AG:39 [CYS] A2:1496 [G] ❌ 4Y4O_1n:40 no longer at interface
1n:13 [THR] 1a:1217 [C] AG:8 [TRP] A2:1513 [C] ❌ 4Y4O_1n:13 no longer at interface
1n:13 [THR] 1a:1218 [C] AG:8 [TRP] A2:1514 [C] ❌ 4Y4O_1n:13 no longer at interface
1n:14 [PRO] 1a:1218 [C] AG:9 [SER] A2:1514 [C] ❌ 4Y4O_1n:14 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
LIM domain-like 0.92 2.46 0.19 0.61 0.93 0.68 0.66 0.60 0.46 0.24 0.25


Other pairs involving 4Y4O_1n_1a or 7O7Y_AG_A2

Total number of entries: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1n_1a 7O7Y_AG_A2 0.60 0.92 2.46 0.19 LIM domain-like compare
4Y4O_1n_1a 7K00_N_A 0.85 0.98 1.53 0.35 LIM domain-like Bacterial small subunit ribosomal RNA compare
4Y4O_1n_1a 7PJS_n_a 0.83 0.98 1.63 0.32 LIM domain-like Bacterial small subunit ribosomal RNA compare
4Y4O_1n_1a 6S0X_n_a 0.32 0.95 3.28 0.38 LIM domain-like Bacterial small subunit ribosomal RNA compare
4Y4O_1n_1a 7RYG_n_a 0.42 0.9 5.09 0.22 LIM domain-like Bacterial small subunit ribosomal RNA compare
7K00_N_A 7O7Y_AG_A2 0.52 0.89 2.6 0.15 LIM domain-like compare