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All interfaces > All interologs > Interface groups > group103 > 7K00_N_A vs 7O7Y_AG_A2

Interface analysis


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Common contacts -

7K00_N
7K00_A
7O7Y_AG
7O7Y_A2
Conserved?
N:69 [ARG] A:1202 [U] AG:26 [ASN] A2:1496 [G] ✔
N:100 [SER] A:1114 [C] AG:56 [ASP] A2:1392 [OMC] ✔
N:100 [SER] A:1186 [G] AG:56 [ASP] A2:1480 [G] ✔
N:100 [SER] A:1187 [G] AG:56 [ASP] A2:1481 [A] ✔
N:100 [SER] A:1188 [A] AG:56 [ASP] A2:1482 [G] ✔
N:75 [ARG] A:1357 [A] AG:32 [ARG] A2:1659 [G] ✔
N:75 [ARG] A:1358 [U] AG:32 [ARG] A2:1660 [U] ✔
N:75 [ARG] A:1359 [C] AG:32 [ARG] A2:1661 [C] ✔
N:75 [ARG] A:1360 [A] AG:32 [ARG] A2:1662 [A] ✔
N:71 [HIS] A:974 [A] AG:28 [HIS] A2:1257 [G] ✔
N:53 [ARG] A:979 [C] AG:10 [HIS] A2:1262 [C] ✔
N:53 [ARG] A:1219 [A] AG:10 [HIS] A2:1515 [G] ✔
N:53 [ARG] A:1317 [C] AG:10 [HIS] A2:1619 [C] ✔
N:72 [GLY] A:974 [A] AG:29 [GLY] A2:1257 [G] ✔
N:72 [GLY] A:975 [A] AG:29 [GLY] A2:1258 [G] ✔
N:81 [ARG] A:973 [G] AG:40 [ARG] A2:1256 [G] ✔
N:81 [ARG] A:974 [A] AG:40 [ARG] A2:1257 [G] ✔
N:13 [ARG] A:1218 [C] AG:8 [TRP] A2:1514 [C] ✔
N:60 [GLN] A:980 [C] AG:17 [GLY] A2:1263 [C] ✔
N:70 [PRO] A:981 [U] AG:27 [ARG] A2:1264 [U] ✔
N:62 [ASN] A:1359 [C] AG:19 [ARG] A2:1661 [C] ✔
N:59 [ARG] A:979 [C] AG:15 [GLY] A2:1262 [C] ✔
N:59 [ARG] A:980 [C] AG:15 [GLY] A2:1263 [C] ✔
N:99 [ALA] A:1187 [G] AG:55 [LEU] A2:1481 [A] ✔
N:74 [LEU] A:1358 [U] AG:31 [ILE] A2:1660 [U] ✔
N:85 [ARG] A:1059 [C] AG:44 [ARG] A2:1337 [C] ✔
N:58 [SER] A:979 [C] AG:14 [PHE] A2:1262 [C] ✔
N:58 [SER] A:980 [C] AG:14 [PHE] A2:1263 [C] ✔
N:58 [SER] A:1316 [G] AG:14 [PHE] A2:1618 [G] ✔
N:58 [SER] A:1317 [C] AG:14 [PHE] A2:1619 [C] ✔
N:58 [SER] A:1360 [A] AG:14 [PHE] A2:1662 [A] ✔
N:57 [PRO] A:1317 [C] AG:13 [LYS] A2:1619 [C] ✔
N:73 [PHE] A:1357 [A] AG:30 [LEU] A2:1659 [G] ✔
N:73 [PHE] A:1358 [U] AG:30 [LEU] A2:1660 [U] ✔
N:98 [LYS] A:1188 [A] AG:54 [LYS] A2:1482 [G] ✔
N:98 [LYS] A:1189 [U] AG:54 [LYS] A2:1483 [C] ✔
N:82 [ILE] A:1202 [U] AG:41 [GLN] A2:1496 [G] ✔
N:67 [THR] A:1202 [U] AG:24 [CYS] A2:1496 [G] ✔
N:67 [THR] A:1203 [C] AG:24 [CYS] A2:1497 [U] ✔
N:83 [LYS] A:1202 [U] AG:42 [CYS] A2:1496 [G] ✔
N:61 [ARG] A:980 [C] AG:18 [SER] A2:1263 [C] ✔
N:86 [GLU] A:1202 [U] AG:45 [GLN] A2:1496 [G] ✔
N:69 [ARG] A:973 [G] AG:26 [ASN] A2:1256 [G] ❌ 7O7Y_AG_A2
N:69 [ARG] A:974 [A] AG:26 [ASN] A2:1257 [G] ❌ 7O7Y_AG_A2
N:100 [SER] A:1113 [C] AG:56 [ASP] A2:1391 [U] ❌ 7O7Y_AG_A2
N:71 [HIS] A:977 [A] AG:28 [HIS] A2:1260 [A] ❌ 7O7Y_AG_A2
N:13 [ARG] A:980 [C] AG:8 [TRP] A2:1263 [C] ❌ 7O7Y_AG_A2
N:13 [ARG] A:981 [U] AG:8 [TRP] A2:1264 [U] ❌ 7O7Y_AG_A2
N:70 [PRO] A:982 [U] AG:27 [ARG] A2:1265 [C] ❌ 7O7Y_AG_A2
N:70 [PRO] A:1049 [U] AG:27 [ARG] A2:1327 [OMU] ❌ 7O7Y_AG_A2
N:59 [ARG] A:1219 [A] AG:15 [GLY] A2:1515 [G] ❌ 7O7Y_AG_A2
N:59 [ARG] A:1317 [C] AG:15 [GLY] A2:1619 [C] ❌ 7O7Y_AG_A2
N:74 [LEU] A:1357 [A] AG:31 [ILE] A2:1659 [G] ❌ 7O7Y_AG_A2
N:57 [PRO] A:1257 [A] AG:13 [LYS] A2:1558 [C] ❌ 7O7Y_AG_A2
N:73 [PHE] A:975 [A] AG:30 [LEU] A2:1258 [G] ❌ 7O7Y_AG_A2
N:73 [PHE] A:1359 [C] AG:30 [LEU] A2:1661 [C] ❌ 7O7Y_AG_A2
N:83 [LYS] A:1203 [C] AG:42 [CYS] A2:1497 [U] ❌ 7O7Y_AG_A2
N:61 [ARG] A:977 [A] AG:18 [SER] A2:1260 [A] ❌ 7O7Y_AG_A2
N:61 [ARG] A:981 [U] AG:18 [SER] A2:1264 [U] ❌ 7O7Y_AG_A2
N:56 [SER] A:1316 [G] AG:12 [ARG] A2:1618 [G] ❌ 7O7Y_AG_A2
N:56 [SER] A:1317 [C] AG:12 [ARG] A2:1619 [C] ❌ 7O7Y_AG_A2
N:63 [ARG] A:981 [U] AG:20 [SER] A2:1264 [U] ❌ 7O7Y_AG_A2
N:63 [ARG] A:982 [U] AG:20 [SER] A2:1265 [C] ❌ 7O7Y_AG_A2
N:54 [ASP] A:1218 [C] AG:11 [PRO] A2:1514 [C] ❌ 7O7Y_AG_A2
N:53 [ARG] A:1218 [C] AG:10 [HIS] A2:1514 [C] ❌ 7K00_N_A
N:53 [ARG] A:980 [C] AG:10 [HIS] A2:1263 [C] ❌ 7K00_N_A
N:54 [ASP] A:1317 [C] AG:11 [PRO] A2:1619 [C] ❌ 7K00_N_A
N:54 [ASP] A:979 [C] AG:11 [PRO] A2:1262 [C] ❌ 7K00_N_A
N:56 [SER] A:1217 [C] AG:12 [ARG] A2:1513 [C] ❌ 7K00_N_A
N:56 [SER] A:1218 [C] AG:12 [ARG] A2:1514 [C] ❌ 7K00_N_A
N:56 [SER] A:981 [U] AG:12 [ARG] A2:1264 [U] ❌ 7K00_N_A
N:56 [SER] A:980 [C] AG:12 [ARG] A2:1263 [C] ❌ 7K00_N_A
N:59 [ARG] A:1360 [A] AG:15 [GLY] A2:1662 [A] ❌ 7K00_N_A
N:60 [GLN] A:981 [U] AG:17 [GLY] A2:1264 [U] ❌ 7K00_N_A
N:62 [ASN] A:1360 [A] AG:19 [ARG] A2:1662 [A] ❌ 7K00_N_A
N:62 [ASN] A:1257 [A] AG:19 [ARG] A2:1558 [C] ❌ 7K00_N_A
N:69 [ARG] A:1203 [C] AG:26 [ASN] A2:1497 [U] ❌ 7K00_N_A
N:69 [ARG] A:1049 [U] AG:26 [ASN] A2:1327 [OMU] ❌ 7K00_N_A
N:71 [HIS] A:981 [U] AG:28 [HIS] A2:1264 [U] ❌ 7K00_N_A
N:71 [HIS] A:1049 [U] AG:28 [HIS] A2:1327 [OMU] ❌ 7K00_N_A
N:71 [HIS] A:982 [U] AG:28 [HIS] A2:1265 [C] ❌ 7K00_N_A
N:73 [PHE] A:974 [A] AG:30 [LEU] A2:1257 [G] ❌ 7K00_N_A
N:74 [LEU] A:974 [A] AG:31 [ILE] A2:1257 [G] ❌ 7K00_N_A
N:75 [ARG] A:1257 [A] AG:32 [ARG] A2:1558 [C] ❌ 7K00_N_A
N:82 [ILE] A:973 [G] AG:41 [GLN] A2:1256 [G] ❌ 7K00_N_A
N:82 [ILE] A:974 [A] AG:41 [GLN] A2:1257 [G] ❌ 7K00_N_A
N:86 [GLU] A:1203 [C] AG:45 [GLN] A2:1497 [U] ❌ 7K00_N_A
N:99 [ALA] A:1113 [C] AG:55 [LEU] A2:1391 [U] ❌ 7K00_N_A
N:99 [ALA] A:1188 [A] AG:55 [LEU] A2:1482 [G] ❌ 7K00_N_A
N:99 [ALA] A:1114 [C] AG:55 [LEU] A2:1392 [OMC] ❌ 7K00_N_A
N:13 [ARG] A:1217 [C] AG:8 [TRP] A2:1513 [C] ❌ 7K00_N_A
N:100 [SER] A:1115 [U] AG:56 [ASP] A2:1393 [U] ❌ 7O7Y_A2:1393 no longer at interface
N:71 [HIS] A:976 [G] AG:28 [HIS] A2:1259 [A] ❌ 7O7Y_A2:1259 no longer at interface
N:53 [ARG] A:1220 [G] AG:10 [HIS] A2:1516 [G] ❌ 7O7Y_A2:1516 no longer at interface
N:72 [GLY] A:976 [G] AG:29 [GLY] A2:1259 [A] ❌ 7O7Y_A2:1259 no longer at interface
N:70 [PRO] A:976 [G] AG:27 [ARG] A2:1259 [A] ❌ 7O7Y_A2:1259 no longer at interface
N:73 [PHE] A:976 [G] AG:30 [LEU] A2:1259 [A] ❌ 7O7Y_A2:1259 no longer at interface
N:61 [ARG] A:976 [G] AG:18 [SER] A2:1259 [A] ❌ 7O7Y_A2:1259 no longer at interface
N:58 [SER] A:1318 [A] AG:14 [PHE] A2:1620 [A] ❌ 7K00_A:1318 no longer at interface
N:97 [LYS] A:1113 [C] AG:53 [ILE] A2:1391 [U] ❌ 7O7Y_AG:53 no longer at interface
N:97 [LYS] A:1114 [C] AG:53 [ILE] A2:1392 [OMC] ❌ 7O7Y_AG:53 no longer at interface
N:76 [LYS] A:1358 [U] AG:35 [GLY] A2:1660 [U] ❌ 7O7Y_AG:35 no longer at interface
N:80 [SER] A:1202 [U] AG:39 [CYS] A2:1496 [G] ❌ 7K00_N:80 no longer at interface
N:52 [PRO] A:1218 [C] AG:9 [SER] A2:1514 [C] ❌ 7K00_N:52 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
LIM domain-like 0.89 2.6 0.15 0.62 0.92 0.68 0.65 0.52 0.41 0.23 0.21


Other pairs involving 7K00_N_A or 7O7Y_AG_A2

Total number of entries: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0X_n_a 7K00_N_A 0.38 0.94 3.26 0.34 LIM domain-like Bacterial small subunit ribosomal RNA compare
4Y4O_1n_1a 7O7Y_AG_A2 0.60 0.92 2.46 0.19 LIM domain-like compare
4Y4O_1n_1a 7K00_N_A 0.85 0.98 1.53 0.35 LIM domain-like Bacterial small subunit ribosomal RNA compare
7K00_N_A 7RYG_n_a 0.31 0.92 5.76 0.21 LIM domain-like Bacterial small subunit ribosomal RNA compare
7K00_N_A 7O7Y_AG_A2 0.52 0.89 2.6 0.15 LIM domain-like compare
7K00_N_A 7PJS_n_a 0.97 1.0 0.63 0.98 LIM domain-like Bacterial small subunit ribosomal RNA compare