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All interfaces > All interologs > Interface groups > group103 > 7O7Y_AG_A2

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_AG
7O7Y_A2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
AG:2 [GLY] A2:1272 [C] 3.56 A2:1512 [U] 51.24
AG:2 [GLY] A2:1273 [C] 3.26 A2:1511 [G] sugar:BB 51.24
AG:3 [HIS] A2:1272 [C] 4.66 A2:1512 [U] 45.76
AG:3 [HIS] A2:1292 [A] 3.61 45.76
AG:3 [HIS] A2:1301 [U] 4.69 45.76
AG:3 [HIS] A2:1302 [A] 2.97 A2:1298 [U] 45.76
AG:3 [HIS] A2:1303 [G] 4.02 A2:1308 [U] 45.76
AG:3 [HIS] A2:1304 [C] 4.71 A2:1297 [U] 45.76
AG:4 [GLN] A2:1291 [G] 3.81 A2:1310 [C] 8.36
AG:4 [GLN] A2:1292 [A] 2.94 8.36
AG:5 [GLN] A2:1302 [A] 4.47 A2:1298 [U] 56.36
AG:6 [LEU] A2:1300 [A] 3.98 0.9
AG:6 [LEU] A2:1302 [A] 3.3 A2:1298 [U] 0.9
AG:6 [LEU] A2:1513 [C] 3.25 A2:1271 [G] sugar:BB 0.9
AG:6 [LEU] A2:1514 [C] 3.32 A2:1270 [G] 0.9
AG:7 [TYR] A2:1275 [G] 2.71 1.12
AG:7 [TYR] A2:1512 [U] 3.91 A2:1272 [C] sugar:SC 1.12
AG:7 [TYR] A2:1513 [C] 2.4 A2:1271 [G] sugar:BB 1.12
AG:7 [TYR] A2:1514 [C] 3.57 A2:1270 [G] 1.12
AG:8 [TRP] A2:1513 [C] 3.5 A2:1271 [G] 0.14
AG:8 [TRP] A2:1514 [C] 3.97 A2:1270 [G] 0.14
AG:9 [SER] A2:1514 [C] 3.65 A2:1270 [G] 51.55
AG:10 [HIS] A2:1262 [C] 2.63 base:SC 55.65
AG:10 [HIS] A2:1263 [C] 3.38 sugar:SC 55.65
AG:10 [HIS] A2:1514 [C] 3.21 A2:1270 [G] 55.65
AG:10 [HIS] A2:1515 [G] 3.27 A2:1269 [C] 55.65
AG:10 [HIS] A2:1619 [C] 3.93 55.65
AG:11 [PRO] A2:1262 [C] 4.32 8.24
AG:11 [PRO] A2:1619 [C] 3.88 8.24
AG:12 [ARG] A2:1263 [C] 3.29 sugar:SC 57.38
AG:12 [ARG] A2:1264 [U] 4.45 57.38
AG:12 [ARG] A2:1513 [C] 4.43 A2:1271 [G] 57.38
AG:12 [ARG] A2:1514 [C] 2.55 A2:1270 [G] 57.38
AG:12 [ARG] A2:1557 [A] 3.13 57.38
AG:13 [LYS] A2:1557 [A] 3.0 37.04
AG:13 [LYS] A2:1619 [C] 3.47 37.04
AG:14 [PHE] A2:1262 [C] 4.13 0.0
AG:14 [PHE] A2:1263 [C] 4.17 0.0
AG:14 [PHE] A2:1557 [A] 4.74 0.0
AG:14 [PHE] A2:1618 [G] 3.1 0.0
AG:14 [PHE] A2:1619 [C] 3.38 0.0
AG:14 [PHE] A2:1620 [A] 3.77 0.0
AG:14 [PHE] A2:1662 [A] 3.31 A2:1261 [A] base/AA stacks 0.0
AG:15 [GLY] A2:1262 [C] 4.54 57.87
AG:15 [GLY] A2:1263 [C] 4.04 57.87
AG:15 [GLY] A2:1662 [A] 3.74 A2:1261 [A] 57.87
AG:16 [GLN] A2:1260 [A] 4.28 45.5
AG:16 [GLN] A2:1263 [C] 3.86 45.5
AG:16 [GLN] A2:1264 [U] 2.8 base:SC 45.5
AG:16 [GLN] A2:1661 [C] 4.3 45.5
AG:17 [GLY] A2:1263 [C] 3.0 base:BB 54.7
AG:17 [GLY] A2:1264 [U] 3.94 54.7
AG:18 [SER] A2:1263 [C] 4.56 47.3
AG:18 [SER] A2:1556 [U] 3.55 47.3
AG:18 [SER] A2:1557 [A] 3.31 base:BB 47.3
AG:19 [ARG] A2:1556 [U] 3.87 64.68
AG:19 [ARG] A2:1557 [A] 3.86 64.68
AG:19 [ARG] A2:1558 [C] 4.83 64.68
AG:19 [ARG] A2:1661 [C] 3.08 64.68
AG:19 [ARG] A2:1662 [A] 2.74 A2:1261 [A] 64.68
AG:20 [SER] A2:1556 [U] 4.48 29.97
AG:22 [ARG] A2:1554 [C] 3.23 base/AA stacks 61.53
AG:24 [CYS] A2:1496 [G] 3.21 90.76
AG:24 [CYS] A2:1497 [U] 3.34 A2:1335 [G] 90.76
AG:26 [ASN] A2:1327 [OMU] 2.82 base:SC 69.78
AG:26 [ASN] A2:1496 [G] 3.31 69.78
AG:26 [ASN] A2:1497 [U] 4.88 A2:1335 [G] 69.78
AG:27 [ARG] A2:1264 [U] 3.83 43.39
AG:28 [HIS] A2:1257 [G] 3.84 53.13
AG:28 [HIS] A2:1264 [U] 3.79 53.13
AG:28 [HIS] A2:1265 [C] 2.9 53.13
AG:28 [HIS] A2:1327 [OMU] 2.8 base:SC 53.13
AG:29 [GLY] A2:1257 [G] 3.35 82.91
AG:29 [GLY] A2:1258 [G] 4.86 A2:1244 [U] 82.91
AG:30 [LEU] A2:1257 [G] 2.73 base:BB 58.71
AG:30 [LEU] A2:1659 [G] 4.9 A2:1667 [C] 58.71
AG:30 [LEU] A2:1660 [U] 3.57 A2:1665 [A] 58.71
AG:31 [ILE] A2:1257 [G] 3.23 92.27
AG:31 [ILE] A2:1660 [U] 3.99 A2:1665 [A] 92.27
AG:32 [ARG] A2:1553 [G] 3.88 77.16
AG:32 [ARG] A2:1558 [C] 3.06 base:SC 77.16
AG:32 [ARG] A2:1659 [G] 4.98 A2:1667 [C] 77.16
AG:32 [ARG] A2:1660 [U] 3.05 A2:1665 [A] 77.16
AG:32 [ARG] A2:1661 [C] 3.37 77.16
AG:32 [ARG] A2:1662 [A] 3.13 A2:1261 [A] 77.16
AG:33 [LYS] A2:1549 [G] 4.68 A2:1585 [G] 79.78
AG:33 [LYS] A2:1550 [U] 3.71 79.78
AG:33 [LYS] A2:1658 [G] 2.9 A2:1668 [U] sugar:SC 79.78
AG:33 [LYS] A2:1659 [G] 3.65 A2:1667 [C] 79.78
AG:33 [LYS] A2:1660 [U] 4.29 A2:1665 [A] 79.78
AG:34 [TYR] A2:1549 [G] 4.11 A2:1585 [G] 87.04
AG:34 [TYR] A2:1550 [U] 2.4 87.04
AG:34 [TYR] A2:1551 [G] 3.95 87.04
AG:37 [ASN] A2:1554 [C] 3.74 69.63
AG:37 [ASN] A2:1555 [C] 3.13 69.63
AG:39 [CYS] A2:1496 [G] 4.58 89.89
AG:40 [ARG] A2:1256 [G] 2.79 A2:1245 [PSU] 96.08
AG:40 [ARG] A2:1257 [G] 3.34 base/AA stacks 96.08
AG:41 [GLN] A2:1256 [G] 4.99 A2:1245 [PSU] 84.27
AG:41 [GLN] A2:1257 [G] 4.08 84.27
AG:41 [GLN] A2:1496 [G] 3.34 base/AA stacks 84.27
AG:42 [CYS] A2:1496 [G] 3.6 92.58
AG:44 [ARG] A2:1337 [C] 2.65 A2:1492 [G] sugar:SC 86.88
AG:45 [GLN] A2:1496 [G] 3.23 base:SC 89.89
AG:45 [GLN] A2:1497 [U] 4.87 A2:1335 [G] 89.89
AG:54 [LYS] A2:1482 [G] 3.51 A2:1390 [C] 93.22
AG:54 [LYS] A2:1483 [C] 3.28 93.22
AG:55 [LEU] A2:1391 [U] 3.86 A2:1481 [A] 56.25
AG:55 [LEU] A2:1392 [OMC] 3.29 A2:1480 [G] 56.25
AG:55 [LEU] A2:1481 [A] 3.96 A2:1391 [U] 56.25
AG:55 [LEU] A2:1482 [G] 3.82 A2:1390 [C] 56.25
AG:56 [ASP] A2:1392 [OMC] 3.86 A2:1480 [G] 78.22
AG:56 [ASP] A2:1480 [G] 4.83 A2:1392 [OMC] 78.22
AG:56 [ASP] A2:1481 [A] 2.63 A2:1391 [U] sugar:SC 78.22
AG:56 [ASP] A2:1482 [G] 3.39 A2:1390 [C] 78.22

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group103 7O7Y_AG_A2 AG: Us14, Oryctolagus cuniculus (natural) A2: 18s rRNA, Oryctolagus cuniculus (natural) G1U7M4 LIM domain-like Eukaryotic small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
7K00_N_A 7O7Y_AG_A2 0.52 0.89 2.6 0.15 LIM domain-like compare
4Y4O_1n_1a 7O7Y_AG_A2 0.60 0.92 2.46 0.19 LIM domain-like compare