Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7O7Y_Am
|
7O7Y_A2
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| Am:2 [GLY] | A2:923 [A] | 4.76 | A2:1023 [U] | 84.71 | ||
| Am:2 [GLY] | A2:924 [G] | 3.24 | A2:1020 [C] | 84.71 | ||
| Am:2 [GLY] | A2:925 [G] | 4.56 | A2:1019 [U] | 84.71 | ||
| Am:2 [GLY] | A2:1092 [C] | 3.51 | A2:1159 [G] | 84.71 | ||
| Am:2 [GLY] | A2:1093 [G] | 2.45 | 84.71 | |||
| Am:3 [ARG] | A2:924 [G] | 3.62 | A2:1020 [C] | 88.02 | ||
| Am:3 [ARG] | A2:925 [G] | 2.55 | A2:1019 [U] | 88.02 | ||
| Am:3 [ARG] | A2:1012 [A] | 4.27 | A2:931 [C] | 88.02 | ||
| Am:3 [ARG] | A2:1013 [A] | 3.27 | A2:930 [G] | 88.02 | ||
| Am:3 [ARG] | A2:1025 [A] | 4.86 | A2:682 [PSU] | 88.02 | ||
| Am:4 [MET] | A2:677 [C] | 3.48 | A2:1030 [G] | 74.88 | ||
| Am:4 [MET] | A2:924 [G] | 3.67 | A2:1020 [C] | 74.88 | ||
| Am:4 [MET] | A2:925 [G] | 3.09 | A2:1019 [U] | 74.88 | ||
| Am:4 [MET] | A2:1024 [A] | 3.43 | A2:683 [U] | 74.88 | ||
| Am:4 [MET] | A2:1025 [A] | 3.19 | A2:682 [PSU] | 74.88 | ||
| Am:5 [HIS] | A2:677 [C] | 3.21 | A2:1030 [G] | 83.59 | ||
| Am:5 [HIS] | A2:678 [G] | 3.02 | A2:1029 [A] | 83.59 | ||
| Am:5 [HIS] | A2:925 [G] | 4.94 | A2:1019 [U] | 83.59 | ||
| Am:6 [ALA] | A2:1012 [A] | 3.75 | A2:931 [C] | 81.39 | ||
| Am:7 [PRO] | A2:997 [A] | 3.75 | 58.0 | |||
| Am:7 [PRO] | A2:1092 [C] | 4.95 | A2:1159 [G] | 58.0 | ||
| Am:8 [GLY] | A2:1012 [A] | 3.63 | A2:931 [C] | 52.45 | ||
| Am:8 [GLY] | A2:1013 [A] | 3.45 | A2:930 [G] | 52.45 | ||
| Am:9 [LYS] | A2:1012 [A] | 4.93 | A2:931 [C] | 72.78 | ||
| Am:9 [LYS] | A2:1013 [A] | 3.67 | A2:930 [G] | 72.78 | ||
| Am:9 [LYS] | A2:1014 [U] | 4.8 | A2:929 [G] | 72.78 | ||
| Am:9 [LYS] | A2:1091 [C] | 4.76 | A2:1160 [G] | 72.78 | ||
| Am:9 [LYS] | A2:1092 [C] | 2.67 | A2:1159 [G] | 72.78 | ||
| Am:9 [LYS] | A2:1093 [G] | 2.7 | 72.78 | |||
| Am:9 [LYS] | A2:1131 [G] | 3.48 | A2:1103 [G] | 72.78 | ||
| Am:9 [LYS] | A2:1132 [G] | 3.75 | A2:1102 [U] | 72.78 | ||
| Am:10 [GLY] | A2:924 [G] | 4.81 | A2:1020 [C] | 92.18 | ||
| Am:10 [GLY] | A2:1013 [A] | 2.93 | A2:930 [G] | 92.18 | ||
| Am:10 [GLY] | A2:1014 [U] | 3.18 | A2:929 [G] | 92.18 | ||
| Am:10 [GLY] | A2:1131 [G] | 4.47 | A2:1103 [G] | 92.18 | ||
| Am:11 [LEU] | A2:922 [G] | 3.41 | 52.05 | |||
| Am:11 [LEU] | A2:1013 [A] | 4.58 | A2:930 [G] | 52.05 | ||
| Am:11 [LEU] | A2:1014 [U] | 2.87 | A2:929 [G] | 52.05 | ||
| Am:11 [LEU] | A2:1130 [G] | 3.87 | A2:1104 [C] | 52.05 | ||
| Am:11 [LEU] | A2:1131 [G] | 4.5 | A2:1103 [G] | 52.05 | ||
| Am:12 [SER] | A2:1014 [U] | 2.96 | A2:929 [G] | 89.9 | ||
| Am:12 [SER] | A2:1015 [G] | 3.38 | A2:928 [C] | 89.9 | ||
| Am:12 [SER] | A2:1016 [U] | 3.23 | A2:927 [A] | 89.9 | ||
| Am:13 [GLN] | A2:921 [A] | 4.26 | A2:1022 [U] | 46.0 | ||
| Am:13 [GLN] | A2:922 [G] | 4.07 | 46.0 | |||
| Am:13 [GLN] | A2:1016 [U] | 3.42 | A2:927 [A] | 46.0 | ||
| Am:13 [GLN] | A2:1017 [U] | 4.39 | 46.0 | |||
| Am:14 [SER] | A2:1016 [U] | 3.32 | A2:927 [A] | 96.72 | ||
| Am:14 [SER] | A2:1017 [U] | 3.45 | 96.72 | |||
| Am:14 [SER] | A2:1018 [U] | 2.82 | A2:926 [G] | 96.72 | ||
| Am:15 [ALA] | A2:1017 [U] | 3.08 | 37.87 | |||
| Am:16 [LEU] | A2:920 [A] | 3.77 | 66.98 | |||
| Am:16 [LEU] | A2:921 [A] | 4.34 | A2:1022 [U] | 66.98 | ||
| Am:16 [LEU] | A2:1017 [U] | 3.97 | 66.98 | |||
| Am:16 [LEU] | A2:1018 [U] | 4.71 | A2:926 [G] | 66.98 | ||
| Am:17 [PRO] | A2:1017 [U] | 3.38 | 86.74 | |||
| Am:20 [ARG] | A2:919 [U] | 2.78 | 1.28 | |||
| Am:20 [ARG] | A2:920 [A] | 3.13 | 1.28 | |||
| Am:46 [THR] | A2:927 [A] | 4.33 | A2:1016 [U] | 59.21 | ||
| Am:47 [PRO] | A2:1018 [U] | 3.77 | A2:926 [G] | sugar:BB | 47.94 | |
| Am:47 [PRO] | A2:1019 [U] | 3.64 | A2:925 [G] | 47.94 | ||
| Am:48 [SER] | A2:926 [G] | 2.97 | A2:1018 [U] | base:SC | 87.09 | |
| Am:48 [SER] | A2:927 [A] | 3.92 | A2:1016 [U] | 87.09 | ||
| Am:48 [SER] | A2:1018 [U] | 2.83 | A2:926 [G] | sugar:BB | 87.09 | |
| Am:48 [SER] | A2:1019 [U] | 3.25 | A2:925 [G] | 87.09 | ||
| Am:49 [GLN] | A2:927 [A] | 3.99 | A2:1016 [U] | 50.05 | ||
| Am:49 [GLN] | A2:928 [C] | 4.48 | A2:1015 [G] | 50.05 | ||
| Am:49 [GLN] | A2:1018 [U] | 4.84 | A2:926 [G] | 50.05 | ||
| Am:51 [GLY] | A2:1018 [U] | 3.39 | A2:926 [G] | 98.8 | ||
| Am:51 [GLY] | A2:1019 [U] | 4.95 | A2:925 [G] | 98.8 | ||
| Am:52 [VAL] | A2:927 [A] | 4.61 | A2:1016 [U] | 45.12 | ||
| Am:52 [VAL] | A2:928 [C] | 4.72 | A2:1015 [G] | 45.12 | ||
| Am:52 [VAL] | A2:1018 [U] | 3.74 | A2:926 [G] | 45.12 | ||
| Am:55 [ARG] | A2:1016 [U] | 3.43 | A2:927 [A] | 96.49 | ||
| Am:55 [ARG] | A2:1017 [U] | 3.27 | 96.49 | |||
| Am:55 [ARG] | A2:1018 [U] | 2.69 | A2:926 [G] | sugar:SC | 96.49 | |
| Am:61 [ALA] | A2:1017 [U] | 3.12 | 79.51 | |||
| Am:61 [ALA] | A2:1018 [U] | 3.92 | A2:926 [G] | 79.51 | ||
| Am:62 [GLN] | A2:1017 [U] | 3.52 | 59.41 | |||
| Am:62 [GLN] | A2:1018 [U] | 2.29 | A2:926 [G] | 59.41 | ||
| Am:62 [GLN] | A2:1019 [U] | 3.29 | A2:925 [G] | 59.41 | ||
| Am:63 [VAL] | A2:1019 [U] | 4.36 | A2:925 [G] | 70.76 | ||
| Am:64 [ARG] | A2:919 [U] | 4.68 | 74.46 | |||
| Am:64 [ARG] | A2:920 [A] | 2.37 | 74.46 | |||
| Am:65 [PHE] | A2:920 [A] | 4.16 | 1.76 | |||
| Am:69 [ASN] | A2:917 [A] | 3.57 | 62.15 | |||
| Am:70 [LYS] | A2:920 [A] | 3.17 | 45.78 | |||
| Am:70 [LYS] | A2:1020 [C] | 3.17 | A2:924 [G] | 45.78 | ||
| Am:70 [LYS] | A2:1021 [A] | 2.79 | base:SC | 45.78 | ||
| Am:71 [ILE] | A2:1018 [U] | 4.58 | A2:926 [G] | 74.9 | ||
| Am:71 [ILE] | A2:1019 [U] | 3.66 | A2:925 [G] | 74.9 | ||
| Am:71 [ILE] | A2:1020 [C] | 3.51 | A2:924 [G] | 74.9 | ||
| Am:72 [LEU] | A2:1019 [U] | 4.48 | A2:925 [G] | 35.42 | ||
| Am:72 [LEU] | A2:1020 [C] | 3.09 | A2:924 [G] | 35.42 | ||
| Am:72 [LEU] | A2:1021 [A] | 4.98 | 35.42 | |||
| Am:73 [ARG] | A2:917 [A] | 2.91 | sugar:SC | base/AA stacks | 7.62 | |
| Am:73 [ARG] | A2:1020 [C] | 4.51 | A2:924 [G] | 7.62 | ||
| Am:86 [GLU] | A2:926 [G] | 4.26 | A2:1018 [U] | 74.24 | ||
| Am:86 [GLU] | A2:927 [A] | 4.85 | A2:1016 [U] | 74.24 | ||
| Am:86 [GLU] | A2:1019 [U] | 2.96 | A2:925 [G] | sugar:SC | 74.24 | |
| Am:87 [ASP] | A2:925 [G] | 3.46 | A2:1019 [U] | base:SC | 92.13 | |
| Am:87 [ASP] | A2:926 [G] | 3.39 | A2:1018 [U] | 92.13 | ||
| Am:87 [ASP] | A2:1020 [C] | 4.46 | A2:924 [G] | 92.13 | ||
| Am:90 [HIS] | A2:926 [G] | 3.67 | A2:1018 [U] | 65.96 | ||
| Am:90 [HIS] | A2:927 [A] | 3.37 | A2:1016 [U] | 65.96 | ||
| Am:91 [LEU] | A2:925 [G] | 4.11 | A2:1019 [U] | 84.33 | ||
| Am:91 [LEU] | A2:926 [G] | 3.7 | A2:1018 [U] | 84.33 | ||
| Am:94 [LYS] | A2:927 [A] | 3.85 | A2:1016 [U] | 78.58 | ||
| Am:94 [LYS] | A2:1010 [A] | 3.66 | A2:933 [G] | 78.58 | ||
| Am:94 [LYS] | A2:1011 [G] | 3.32 | A2:932 [C] | 78.58 | ||
| Am:97 [ALA] | A2:1009 [A] | 3.86 | A2:935 [G] | 33.3 | ||
| Am:97 [ALA] | A2:1010 [A] | 4.05 | A2:933 [G] | 33.3 | ||
| Am:98 [VAL] | A2:1009 [A] | 3.73 | A2:935 [G] | 65.72 | ||
| Am:98 [VAL] | A2:1010 [A] | 3.56 | A2:933 [G] | 65.72 | ||
| Am:101 [HIS] | A2:936 [G] | 3.46 | A2:1008 [C] | 98.27 | ||
| Am:101 [HIS] | A2:937 [G] | 4.83 | A2:1007 [C] | 98.27 | ||
| Am:101 [HIS] | A2:1008 [C] | 2.61 | A2:936 [G] | sugar:SC | 98.27 | |
| Am:101 [HIS] | A2:1009 [A] | 3.54 | A2:935 [G] | base/AA stacks | 98.27 | |
| Am:104 [ARG] | A2:1008 [C] | 3.64 | A2:936 [G] | 27.98 | ||
| Am:105 [ASN] | A2:937 [G] | 2.74 | A2:1007 [C] | sugar:SC | 84.93 | |
| Am:105 [ASN] | A2:938 [C] | 3.93 | A2:1006 [G] | 84.93 | ||
| Am:105 [ASN] | A2:1008 [C] | 4.68 | A2:936 [G] | 84.93 | ||
| Am:107 [LYS] | A2:936 [G] | 4.81 | A2:1008 [C] | 68.99 | ||
| Am:107 [LYS] | A2:937 [G] | 3.58 | A2:1007 [C] | 68.99 | ||
| Am:107 [LYS] | A2:938 [C] | 3.3 | A2:1006 [G] | 68.99 | ||
| Am:107 [LYS] | A2:1075 [C] | 4.92 | A2:1042 [G] | 68.99 | ||
| Am:107 [LYS] | A2:1076 [C] | 2.79 | A2:1041 [G] | 68.99 | ||
| Am:107 [LYS] | A2:1077 [G] | 3.28 | A2:1040 [C] | 68.99 | ||
| Am:108 [ASP] | A2:936 [G] | 2.67 | A2:1008 [C] | base:SC, sugar:SC | 99.0 | |
| Am:108 [ASP] | A2:937 [G] | 3.34 | A2:1007 [C] | 99.0 | ||
| Am:109 [LYS] | A2:936 [G] | 4.17 | A2:1008 [C] | 13.24 | ||
| Am:109 [LYS] | A2:1032 [A2M] | 4.6 | A2:675 [C] | 13.24 | ||
| Am:109 [LYS] | A2:1033 [C] | 3.56 | A2:674 [G] | 13.24 | ||
| Am:109 [LYS] | A2:1034 [G] | 2.71 | A2:1085 [A] | 13.24 | ||
| Am:110 [ASP] | A2:935 [G] | 3.11 | A2:1009 [A] | base:SC | 39.62 | |
| Am:110 [ASP] | A2:936 [G] | 3.79 | A2:1008 [C] | sugar:BB | 39.62 | |
| Am:110 [ASP] | A2:996 [G] | 4.69 | A2:999 [A] | 39.62 | ||
| Am:110 [ASP] | A2:997 [A] | 4.79 | 39.62 | |||
| Am:110 [ASP] | A2:1010 [A] | 4.87 | A2:933 [G] | 39.62 | ||
| Am:112 [LYS] | A2:1032 [A2M] | 3.17 | A2:675 [C] | 72.85 | ||
| Am:112 [LYS] | A2:1033 [C] | 2.97 | A2:674 [G] | 72.85 | ||
| Am:113 [PHE] | A2:676 [U] | 3.49 | A2:1031 [A] | 64.01 | ||
| Am:113 [PHE] | A2:997 [A] | 3.31 | base/AA stacks | 64.01 | ||
| Am:113 [PHE] | A2:1032 [A2M] | 3.74 | A2:675 [C] | 64.01 | ||
| Am:114 [ARG] | A2:996 [G] | 2.77 | A2:999 [A] | 51.73 | ||
| Am:114 [ARG] | A2:997 [A] | 2.77 | 51.73 | |||
| Am:114 [ARG] | A2:1010 [A] | 3.35 | A2:933 [G] | 51.73 | ||
| Am:114 [ARG] | A2:1011 [G] | 4.82 | A2:932 [C] | 51.73 | ||
| Am:116 [ILE] | A2:677 [C] | 3.85 | A2:1030 [G] | 25.9 | ||
| Am:116 [ILE] | A2:1032 [A2M] | 3.33 | A2:675 [C] | 25.9 | ||
| Am:117 [LEU] | A2:676 [U] | 4.05 | A2:1031 [A] | 59.6 | ||
| Am:117 [LEU] | A2:677 [C] | 3.7 | A2:1030 [G] | 59.6 | ||
| Am:118 [ILE] | A2:1010 [A] | 4.48 | A2:933 [G] | 54.74 | ||
| Am:118 [ILE] | A2:1011 [G] | 4.43 | A2:932 [C] | 54.74 | ||
| Am:120 [SER] | A2:677 [C] | 2.89 | A2:1030 [G] | sugar:SC | 86.94 | |
| Am:120 [SER] | A2:678 [G] | 3.53 | A2:1029 [A] | 86.94 | ||
| Am:121 [ARG] | A2:925 [G] | 3.58 | A2:1019 [U] | 79.52 | ||
| Am:121 [ARG] | A2:926 [G] | 2.87 | A2:1018 [U] | 79.52 | ||
| Am:121 [ARG] | A2:1011 [G] | 3.98 | A2:932 [C] | 79.52 | ||
| Am:124 [ARG] | A2:677 [C] | 4.49 | A2:1030 [G] | 84.51 | ||
| Am:124 [ARG] | A2:678 [G] | 2.79 | A2:1029 [A] | 84.51 | ||
| Am:124 [ARG] | A2:679 [U] | 4.49 | A2:1028 [A] | 84.51 | ||
| Am:124 [ARG] | A2:1023 [U] | 4.06 | A2:923 [A] | 84.51 | ||
| Am:124 [ARG] | A2:1024 [A] | 3.18 | A2:683 [U] | 84.51 | ||
| Am:124 [ARG] | A2:1025 [A] | 2.78 | A2:682 [PSU] | 84.51 | ||
| Am:125 [LEU] | A2:925 [G] | 4.34 | A2:1019 [U] | 77.98 | ||
| Am:125 [LEU] | A2:1023 [U] | 3.74 | A2:923 [A] | 77.98 | ||
| Am:127 [ARG] | A2:678 [G] | 4.78 | A2:1029 [A] | 61.9 | ||
| Am:127 [ARG] | A2:679 [U] | 2.95 | A2:1028 [A] | 61.9 | ||
| Am:128 [TYR] | A2:1020 [C] | 4.82 | A2:924 [G] | 90.78 | ||
| Am:128 [TYR] | A2:1021 [A] | 3.22 | 90.78 | |||
| Am:128 [TYR] | A2:1022 [U] | 3.04 | A2:921 [A] | 90.78 | ||
| Am:128 [TYR] | A2:1023 [U] | 3.21 | A2:923 [A] | 90.78 | ||
| Am:129 [TYR] | A2:1020 [C] | 3.88 | A2:924 [G] | sugar:SC | 81.68 | |
| Am:132 [LYS] | A2:1022 [U] | 3.51 | A2:921 [A] | 39.18 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group104 | 7O7Y_Am_A2 | Am: Us15, Oryctolagus cuniculus (natural) A2: 18s rRNA, Oryctolagus cuniculus (natural) | G1SP51 | 40S ribosomal protein S13 N-terminal domain & S15/NS1 RNA-binding domain | Eukaryotic small subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1o_1a | 7O7Y_Am_A2 | 0.65 | 0.92 | 2.67 | 0.17 | S15/NS1 RNA-binding domain | compare |