RNAprotDB

All interfaces > All interologs > Interface groups > group105 > 1JJ2_1_0

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

1JJ2_1
1JJ2_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1:1 [GLY] 0:1414 [A] 2.84 0:1681 [G] 67.17
1:1 [GLY] 0:1415 [G] 2.95 0:1680 [C] base:BB 67.17
1:1 [GLY] 0:1417 [G] 4.97 67.17
1:1 [GLY] 0:1681 [G] 4.98 0:1414 [A] 67.17
1:2 [LYS] 0:1413 [A] 3.22 54.23
1:2 [LYS] 0:1414 [A] 3.21 0:1681 [G] 54.23
1:2 [LYS] 0:1415 [G] 4.43 0:1680 [C] 54.23
1:2 [LYS] 0:1486 [A] 3.39 54.23
1:2 [LYS] 0:1676 [G] 4.39 0:1451 [C] 54.23
1:3 [LYS] 0:1417 [G] 3.44 88.69
1:3 [LYS] 0:1418 [U] 3.18 0:1446 [U] base:SC 88.69
1:3 [LYS] 0:1486 [A] 4.89 88.69
1:3 [LYS] 0:1675 [C] 4.48 0:1452 [G] 88.69
1:3 [LYS] 0:1676 [G] 3.22 0:1451 [C] 88.69
1:3 [LYS] 0:1677 [U] 3.49 0:1448 [A] 88.69
1:3 [LYS] 0:1678 [A] 4.87 0:1419 [U] 88.69
1:4 [SER] 0:121 [U] 4.53 53.52
1:4 [SER] 0:1675 [C] 4.46 0:1452 [G] 53.52
1:4 [SER] 0:1676 [G] 4.39 0:1451 [C] 53.52
1:5 [LYS] 0:122 [C] 3.37 0:118 [G] 8.0
1:5 [LYS] 0:123 [U] 2.7 0:117 [A] 8.0
1:5 [LYS] 0:1674 [C] 4.4 0:1453 [G] 8.0
1:5 [LYS] 0:1675 [C] 3.08 0:1452 [G] 8.0
1:5 [LYS] 0:1676 [G] 3.86 0:1451 [C] 8.0
1:6 [ALA] 0:121 [U] 3.41 10.21
1:6 [ALA] 0:122 [C] 3.52 0:118 [G] 10.21
1:7 [THR] 0:120 [A] 3.65 42.47
1:7 [THR] 0:121 [U] 4.64 42.47
1:8 [LYS] 0:1446 [U] 4.54 0:1418 [U] 98.65
1:8 [LYS] 0:1676 [G] 3.42 0:1451 [C] 98.65
1:8 [LYS] 0:1677 [U] 2.51 0:1448 [A] 98.65
1:9 [LYS] 0:53 [C] 4.31 0:66 [G] 34.09
1:9 [LYS] 0:54 [G] 4.93 0:65 [C] 34.09
1:9 [LYS] 0:122 [C] 3.08 0:118 [G] 34.09
1:10 [ARG] 0:52 [A] 4.62 0:109 [U] 77.93
1:10 [ARG] 0:53 [C] 3.71 0:66 [G] 77.93
1:10 [ARG] 0:120 [A] 3.77 77.93
1:10 [ARG] 0:121 [U] 2.39 base/AA stacks 77.93
1:11 [LEU] 0:1417 [G] 3.66 83.17
1:11 [LEU] 0:1418 [U] 4.84 0:1446 [U] 83.17
1:13 [LYS] 0:53 [C] 3.41 0:66 [G] 64.72
1:13 [LYS] 0:54 [G] 2.63 0:65 [C] 64.72
1:14 [LEU] 0:1418 [U] 4.93 0:1446 [U] 67.29
1:15 [ASP] 0:1418 [U] 4.04 0:1446 [U] 0.0
1:16 [ASN] 0:60 [A] 3.19 0:86 [A] 58.25
1:17 [GLN] 0:60 [A] 3.56 0:86 [A] sugar:BB 57.42
1:17 [GLN] 0:61 [G] 2.88 0:85 [C] 57.42
1:19 [SER] 0:60 [A] 2.9 0:86 [A] sugar:SC 60.96
1:19 [SER] 0:1442 [A] 4.06 0:1422 [U] 60.96
1:20 [ARG] 0:60 [A] 4.1 0:86 [A] 71.05
1:20 [ARG] 0:1440 [U] 4.55 0:1424 [A] 71.05
1:20 [ARG] 0:1441 [G] 4.11 0:1423 [C] 71.05
1:20 [ARG] 0:1442 [A] 3.75 0:1422 [U] 71.05
1:21 [VAL] 0:60 [A] 3.97 0:86 [A] 78.77
1:22 [PRO] 0:59 [A] 4.32 99.0
1:22 [PRO] 0:60 [A] 3.67 0:86 [A] 99.0
1:24 [TRP] 0:58 [C] 3.58 0:88 [G] base/AA stacks 83.45
1:24 [TRP] 0:59 [A] 3.86 83.45
1:24 [TRP] 0:60 [A] 4.9 0:86 [A] 83.45
1:24 [TRP] 0:86 [A] 4.93 0:60 [A] 83.45
1:24 [TRP] 0:88 [G] 2.87 0:58 [C] base/AA stacks 83.45
1:25 [VAL] 0:60 [A] 3.56 0:86 [A] 81.71
1:25 [VAL] 0:86 [A] 3.38 0:60 [A] 81.71
1:27 [LEU] 0:87 [C] 3.34 sugar:BB 48.81
1:27 [LEU] 0:88 [G] 3.19 0:58 [C] 48.81
1:28 [LYS] 0:58 [C] 4.75 0:88 [G] 75.27
1:28 [LYS] 0:59 [A] 4.75 75.27
1:28 [LYS] 0:84 [G] 4.99 0:62 [C] 75.27
1:28 [LYS] 0:86 [A] 3.54 0:60 [A] 75.27
1:28 [LYS] 0:87 [C] 3.18 75.27
1:28 [LYS] 0:88 [G] 2.92 0:58 [C] base:SC 75.27
1:29 [THR] 0:86 [A] 3.39 0:60 [A] 96.37
1:29 [THR] 0:87 [C] 4.15 96.37
1:30 [ASP] 0:87 [C] 2.92 sugar:SC 36.59
1:31 [GLU] 0:513 [A] 4.12 73.55
1:35 [ARG] 0:462 [A] 4.3 1.75
1:35 [ARG] 0:514 [G] 3.26 1.75
1:36 [ASN] 0:60 [A] 3.07 0:86 [A] sugar:SC 80.13
1:37 [HIS] 0:462 [A] 3.32 base/AA stacks 47.18
1:37 [HIS] 0:466 [A] 3.44 0:475 [G] 47.18
1:38 [LYS] 0:61 [G] 3.91 0:85 [C] 50.64
1:38 [LYS] 0:62 [C] 3.54 0:84 [G] 50.64
1:38 [LYS] 0:465 [U] 4.14 0:476 [A] 50.64
1:38 [LYS] 0:466 [A] 3.71 0:475 [G] 50.64
1:39 [ARG] 0:467 [G] 4.25 0:474 [C] 60.98
1:39 [ARG] 0:1441 [G] 4.94 0:1423 [C] 60.98
1:40 [ARG] 0:1417 [G] 4.14 95.42
1:40 [ARG] 0:1418 [U] 2.68 0:1446 [U] 95.42
1:41 [HIS] 0:1418 [U] 4.65 0:1446 [U] 67.4
1:41 [HIS] 0:1438 [G] 4.72 67.4
1:41 [HIS] 0:1439 [C] 2.87 0:1425 [G] 67.4
1:41 [HIS] 0:1440 [U] 4.17 0:1424 [A] 67.4
1:42 [TRP] 0:1416 [G] 3.9 0:1679 [C] 92.52
1:42 [TRP] 0:1417 [G] 3.75 92.52
1:42 [TRP] 0:1418 [U] 3.03 0:1446 [U] 92.52
1:42 [TRP] 0:1419 [U] 3.32 0:1678 [A] 92.52
1:42 [TRP] 0:1438 [G] 4.07 92.52
1:42 [TRP] 0:1439 [C] 2.9 0:1425 [G] 92.52
1:42 [TRP] 0:1685 [A] 3.06 92.52
1:42 [TRP] 0:1686 [C] 3.86 0:1695 [G] 92.52
1:43 [ARG] 0:1438 [G] 3.55 93.4
1:43 [ARG] 0:1684 [A] 2.79 base:SC, sugar:SC 93.4
1:43 [ARG] 0:1685 [A] 3.67 93.4
1:43 [ARG] 0:1686 [C] 4.31 0:1695 [G] 93.4
1:43 [ARG] 0:1690 [C] 4.89 93.4
1:43 [ARG] 0:1691 [A] 3.06 93.4
1:44 [ARG] 0:468 [U] 4.97 0:473 [A] 70.13
1:44 [ARG] 0:1690 [C] 3.94 70.13
1:44 [ARG] 0:1691 [A] 3.56 70.13
1:45 [ASN] 0:467 [G] 3.41 0:474 [C] 47.72
1:45 [ASN] 0:1416 [G] 4.85 0:1679 [C] 47.72
1:45 [ASN] 0:1417 [G] 3.37 47.72
1:46 [ASP] 0:1416 [G] 4.82 0:1679 [C] 67.39
1:46 [ASP] 0:1417 [G] 3.33 67.39
1:46 [ASP] 0:1687 [C] 4.19 0:1694 [G] 67.39
1:47 [THR] 0:1417 [G] 2.81 75.16
1:49 [GLU] 0:120 [A] 3.64 78.13
1:49 [GLU] 0:1416 [G] 4.04 0:1679 [C] 78.13

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group105 1JJ2_1_0 1: Ribosomal protein l39e, Haloarcula marismortui (natural) 0: 23s rRNA, Haloarcula marismortui (natural) P22452 Ribosomal protein L39e Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_1_0 1VQ8_2_0 0.98 1.0 0.52 0.96 Ribosomal protein L39e Archaeal large subunit ribosomal RNA compare
1JJ2_1_0 1YHQ_2_0 0.99 1.0 0.29 0.95 Ribosomal protein L39e Archaeal large subunit ribosomal RNA compare
1JJ2_1_0 6AZ3_l_1,2 0.76 0.79 1.79 0.38 Ribosomal protein L39e compare
1JJ2_1_0 6AZ3_l_7 0.63 0.72 1.52 0.42 Ribosomal protein L39e compare
1JJ2_1_0 7O7Y_Bl_B5 0.80 0.94 2.12 0.34 Ribosomal protein L39e compare
1JJ2_1_0 7O7Y_Bl_B8 0.57 0.75 1.49 0.36 Ribosomal protein L39e compare