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All interfaces > All interologs > Interface groups > group105 > 1VQ8_2_0

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_2
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
2:1 [GLY] 0:1414 [A] 3.02 0:1681 [G] 67.67
2:1 [GLY] 0:1415 [G] 2.77 0:1680 [C] base:BB 67.67
2:1 [GLY] 0:1416 [G] 4.88 0:1679 [C] 67.67
2:1 [GLY] 0:1417 [G] 4.92 67.67
2:2 [LYS] 0:1413 [A] 3.66 60.44
2:2 [LYS] 0:1414 [A] 2.97 0:1681 [G] 60.44
2:2 [LYS] 0:1415 [G] 4.49 0:1680 [C] 60.44
2:2 [LYS] 0:1452 [G] 4.91 0:1675 [C] 60.44
2:2 [LYS] 0:1486 [A] 3.44 sugar:SC 60.44
2:2 [LYS] 0:1676 [G] 4.32 0:1451 [C] 60.44
2:3 [LYS] 0:1417 [G] 3.83 86.15
2:3 [LYS] 0:1418 [U] 3.95 0:1446 [U] base:SC 86.15
2:3 [LYS] 0:1486 [A] 4.77 86.15
2:3 [LYS] 0:1675 [C] 4.6 0:1452 [G] 86.15
2:3 [LYS] 0:1676 [G] 3.21 0:1451 [C] 86.15
2:3 [LYS] 0:1677 [U] 2.93 0:1448 [A] 86.15
2:4 [SER] 0:121 [U] 4.4 59.07
2:4 [SER] 0:1675 [C] 4.62 0:1452 [G] 59.07
2:4 [SER] 0:1676 [G] 4.46 0:1451 [C] 59.07
2:5 [LYS] 0:122 [C] 3.63 0:118 [G] 0.4
2:5 [LYS] 0:123 [U] 2.89 0:117 [A] 0.4
2:5 [LYS] 0:1674 [C] 4.53 0:1453 [G] 0.4
2:5 [LYS] 0:1675 [C] 3.19 0:1452 [G] 0.4
2:5 [LYS] 0:1676 [G] 4.01 0:1451 [C] 0.4
2:6 [ALA] 0:121 [U] 3.39 12.84
2:6 [ALA] 0:122 [C] 3.51 0:118 [G] 12.84
2:7 [THR] 0:120 [A] 3.68 36.0
2:7 [THR] 0:121 [U] 4.57 36.0
2:8 [LYS] 0:1676 [G] 3.16 0:1451 [C] 98.82
2:8 [LYS] 0:1677 [U] 2.41 0:1448 [A] 98.82
2:9 [LYS] 0:53 [C] 4.46 0:66 [G] 7.63
2:9 [LYS] 0:54 [G] 4.82 0:65 [C] 7.63
2:9 [LYS] 0:122 [C] 3.31 0:118 [G] 7.63
2:10 [ARG] 0:52 [A] 4.38 0:109 [U] 85.29
2:10 [ARG] 0:53 [C] 3.6 0:66 [G] 85.29
2:10 [ARG] 0:120 [A] 3.87 85.29
2:10 [ARG] 0:121 [U] 2.33 base/AA stacks 85.29
2:11 [LEU] 0:1417 [G] 3.44 82.38
2:11 [LEU] 0:1418 [U] 4.85 0:1446 [U] 82.38
2:13 [LYS] 0:53 [C] 3.35 0:66 [G] 62.33
2:13 [LYS] 0:54 [G] 2.88 0:65 [C] 62.33
2:14 [LEU] 0:1418 [U] 4.88 0:1446 [U] 65.96
2:15 [ASP] 0:1418 [U] 3.94 0:1446 [U] 0.0
2:16 [ASN] 0:60 [A] 3.59 0:86 [A] 59.53
2:17 [GLN] 0:60 [A] 3.51 0:86 [A] sugar:BB 55.22
2:17 [GLN] 0:61 [G] 2.75 0:85 [C] 55.22
2:18 [ASN] 0:1418 [U] 4.92 0:1446 [U] 87.28
2:19 [SER] 0:60 [A] 3.23 0:86 [A] sugar:SC 59.58
2:20 [ARG] 0:60 [A] 3.83 0:86 [A] 66.22
2:20 [ARG] 0:1441 [G] 4.13 0:1423 [C] 66.22
2:20 [ARG] 0:1442 [A] 4.43 0:1422 [U] 66.22
2:21 [VAL] 0:60 [A] 4.01 0:86 [A] 80.55
2:22 [PRO] 0:59 [A] 4.15 99.0
2:22 [PRO] 0:60 [A] 3.58 0:86 [A] 99.0
2:24 [TRP] 0:58 [C] 3.35 0:88 [G] base/AA stacks 87.42
2:24 [TRP] 0:59 [A] 3.61 87.42
2:24 [TRP] 0:60 [A] 4.74 0:86 [A] 87.42
2:24 [TRP] 0:86 [A] 4.16 0:60 [A] 87.42
2:24 [TRP] 0:88 [G] 3.18 0:58 [C] base/AA stacks 87.42
2:25 [VAL] 0:60 [A] 3.41 0:86 [A] 82.12
2:25 [VAL] 0:86 [A] 3.33 0:60 [A] 82.12
2:27 [LEU] 0:87 [C] 3.34 sugar:BB 45.51
2:27 [LEU] 0:88 [G] 3.64 0:58 [C] 45.51
2:28 [LYS] 0:84 [G] 4.95 0:62 [C] 75.79
2:28 [LYS] 0:85 [C] 4.99 0:61 [G] 75.79
2:28 [LYS] 0:86 [A] 3.19 0:60 [A] 75.79
2:28 [LYS] 0:87 [C] 2.84 75.79
2:28 [LYS] 0:88 [G] 3.38 0:58 [C] 75.79
2:29 [THR] 0:86 [A] 3.41 0:60 [A] 95.17
2:29 [THR] 0:87 [C] 4.13 95.17
2:30 [ASP] 0:87 [C] 2.64 sugar:SC, sugar:SC 38.14
2:30 [ASP] 0:513 [A] 3.96 38.14
2:31 [ARG] 0:513 [A] 3.21 sugar:SC base/AA stacks 75.44
2:35 [ARG] 0:462 [A] 4.21 37.05
2:35 [ARG] 0:514 [G] 2.82 37.05
2:36 [ASN] 0:60 [A] 2.88 0:86 [A] sugar:SC 83.89
2:37 [HIS] 0:462 [A] 3.08 sugar:SC base/AA stacks 53.79
2:37 [HIS] 0:465 [U] 4.98 0:476 [A] 53.79
2:37 [HIS] 0:466 [A] 3.53 0:475 [G] 53.79
2:38 [LYS] 0:61 [G] 4.28 0:85 [C] 55.25
2:38 [LYS] 0:62 [C] 4.16 0:84 [G] 55.25
2:38 [LYS] 0:465 [U] 3.65 0:476 [A] 55.25
2:38 [LYS] 0:466 [A] 3.19 0:475 [G] 55.25
2:39 [ARG] 0:467 [G] 4.69 0:474 [C] 67.91
2:40 [ARG] 0:1417 [G] 4.14 97.44
2:40 [ARG] 0:1418 [U] 2.84 0:1446 [U] 97.44
2:41 [HIS] 0:1418 [U] 4.64 0:1446 [U] 64.37
2:41 [HIS] 0:1438 [G] 4.76 64.37
2:41 [HIS] 0:1439 [C] 2.93 0:1425 [G] 64.37
2:41 [HIS] 0:1440 [U] 4.72 0:1424 [A] 64.37
2:42 [TRP] 0:1416 [G] 3.83 0:1679 [C] 94.39
2:42 [TRP] 0:1417 [G] 3.65 94.39
2:42 [TRP] 0:1418 [U] 3.19 0:1446 [U] 94.39
2:42 [TRP] 0:1419 [U] 3.44 0:1678 [A] 94.39
2:42 [TRP] 0:1438 [G] 4.12 94.39
2:42 [TRP] 0:1439 [C] 2.94 0:1425 [G] 94.39
2:42 [TRP] 0:1685 [A] 3.29 94.39
2:42 [TRP] 0:1686 [C] 4.01 0:1695 [G] 94.39
2:43 [ARG] 0:1438 [G] 3.41 95.43
2:43 [ARG] 0:1684 [A] 2.69 base:SC, sugar:SC 95.43
2:43 [ARG] 0:1685 [A] 3.81 95.43
2:43 [ARG] 0:1686 [C] 4.24 0:1695 [G] 95.43
2:43 [ARG] 0:1691 [A] 3.08 95.43
2:44 [ARG] 0:1690 [C] 3.67 73.23
2:44 [ARG] 0:1691 [A] 3.41 73.23
2:45 [ASN] 0:467 [G] 3.05 0:474 [C] 54.87
2:45 [ASN] 0:1416 [G] 4.7 0:1679 [C] 54.87
2:45 [ASN] 0:1417 [G] 3.38 54.87
2:46 [ASP] 0:1416 [G] 4.87 0:1679 [C] 72.58
2:46 [ASP] 0:1417 [G] 3.26 72.58
2:46 [ASP] 0:1687 [C] 4.47 0:1694 [G] 72.58
2:47 [THR] 0:1417 [G] 2.82 81.14
2:49 [GLU] 0:120 [A] 3.42 80.15
2:49 [GLU] 0:1416 [G] 4.15 0:1679 [C] 80.15

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group105 1VQ8_2_0 2: 50s ribosomal protein l39e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P22452 Ribosomal protein L39e Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_1_0 1VQ8_2_0 0.98 1.0 0.52 0.96 Ribosomal protein L39e Archaeal large subunit ribosomal RNA compare
1VQ8_2_0 6AZ3_l_7 0.73 0.72 1.25 0.46 Ribosomal protein L39e compare
1VQ8_2_0 1YHQ_2_0 0.99 1.0 0.33 0.98 Ribosomal protein L39e Archaeal large subunit ribosomal RNA compare
1VQ8_2_0 6AZ3_l_1,2 0.73 0.79 1.72 0.41 Ribosomal protein L39e compare
1VQ8_2_0 7O7Y_Bl_B8 0.69 0.75 1.23 0.36 Ribosomal protein L39e compare
1VQ8_2_0 7O7Y_Bl_B5 0.76 0.94 2.08 0.38 Ribosomal protein L39e compare