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All interfaces > All interologs > Interface groups > group105 > 1VQ8_2_0 vs 7O7Y_Bl_B8

Interface analysis


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Common contacts -

1VQ8_2
1VQ8_0
7O7Y_Bl
7O7Y_B8
Conserved?
2:6 [ALA] 0:122 [C] Bl:8 [ARG] B8:111 [U] ✔
2:19 [SER] 0:60 [A] Bl:21 [ARG] B8:52 [A] ✔
2:10 [ARG] 0:53 [C] Bl:12 [PHE] B8:45 [C] ✔
2:25 [VAL] 0:60 [A] Bl:27 [ILE] B8:52 [A] ✔
2:17 [GLN] 0:60 [A] Bl:19 [GLN] B8:52 [A] ✔
2:17 [GLN] 0:61 [G] Bl:19 [GLN] B8:53 [G] ✔
2:22 [PRO] 0:59 [A] Bl:24 [PRO] B8:51 [U] ✔
2:22 [PRO] 0:60 [A] Bl:24 [PRO] B8:52 [A] ✔
2:9 [LYS] 0:53 [C] Bl:11 [ARG] B8:45 [C] ✔
2:9 [LYS] 0:54 [G] Bl:11 [ARG] B8:46 [G] ✔
2:24 [TRP] 0:58 [C] Bl:26 [TRP] B8:50 [C] ✔
2:24 [TRP] 0:59 [A] Bl:26 [TRP] B8:51 [U] ✔
2:24 [TRP] 0:88 [G] Bl:26 [TRP] B8:75 [OMG] ✔
2:38 [LYS] 0:61 [G] Bl:40 [LYS] B8:53 [G] ✔
2:38 [LYS] 0:62 [C] Bl:40 [LYS] B8:54 [C] ✔
2:27 [LEU] 0:88 [G] Bl:29 [MET] B8:75 [OMG] ✔
2:36 [ASN] 0:60 [A] Bl:38 [ASN] B8:52 [A] ✔
2:16 [ASN] 0:60 [A] Bl:18 [LYS] B8:52 [A] ✔
2:5 [LYS] 0:122 [C] Bl:7 [PHE] B8:111 [U] ✔
2:28 [LYS] 0:88 [G] Bl:30 [LYS] B8:75 [OMG] ✔
2:13 [LYS] 0:53 [C] Bl:15 [LYS] B8:45 [C] ✔
2:13 [LYS] 0:54 [G] Bl:15 [LYS] B8:46 [G] ✔
2:20 [ARG] 0:60 [A] Bl:22 [PRO] B8:52 [A] ✔
2:21 [VAL] 0:60 [A] Bl:23 [ILE] B8:52 [A] ✔
2:10 [ARG] 0:52 [A] Bl:12 [PHE] B8:44 [A] ❌ 7O7Y_Bl_B8
2:10 [ARG] 0:120 [A] Bl:12 [PHE] B8:110 [U] ❌ 7O7Y_Bl_B8
2:9 [LYS] 0:122 [C] Bl:11 [ARG] B8:111 [U] ❌ 7O7Y_Bl_B8
2:24 [TRP] 0:60 [A] Bl:26 [TRP] B8:52 [A] ❌ 7O7Y_Bl_B8
2:27 [LEU] 0:87 [C] Bl:29 [MET] B8:74 [U] ❌ 7O7Y_Bl_B8
2:28 [LYS] 0:87 [C] Bl:30 [LYS] B8:74 [U] ❌ 7O7Y_Bl_B8
2:9 [LYS] 0:52 [A] Bl:11 [ARG] B8:44 [A] ❌ 1VQ8_2_0
2:13 [LYS] 0:52 [A] Bl:15 [LYS] B8:44 [A] ❌ 1VQ8_2_0
2:16 [ASN] 0:54 [G] Bl:18 [LYS] B8:46 [G] ❌ 1VQ8_2_0
2:16 [ASN] 0:53 [C] Bl:18 [LYS] B8:45 [C] ❌ 1VQ8_2_0
2:19 [SER] 0:59 [A] Bl:21 [ARG] B8:51 [U] ❌ 1VQ8_2_0
2:25 [VAL] 0:59 [A] Bl:27 [ILE] B8:51 [U] ❌ 1VQ8_2_0
2:28 [LYS] 0:59 [A] Bl:30 [LYS] B8:51 [U] ❌ 1VQ8_2_0
2:36 [ASN] 0:61 [G] Bl:38 [ASN] B8:53 [G] ❌ 1VQ8_2_0
2:3 [LYS] 0:122 [C] Bl:5 [LYS] B8:111 [U] ❌ 1VQ8_2_0
2:4 [SER] 0:122 [C] Bl:6 [THR] B8:111 [U] ❌ 1VQ8_2_0
2:6 [ALA] 0:120 [A] Bl:8 [ARG] B8:110 [U] ❌ 1VQ8_2_0
2:5 [LYS] 0:123 [U] Bl:7 [PHE] B8:112 [G] ❌ 7O7Y_B8:112 no longer at interface
2:6 [ALA] 0:119 [A] Bl:8 [ARG] B8:109 [C] ❌ 1VQ8_0:119 no longer at interface
2:7 [THR] 0:120 [A] Bl:9 [ILE] B8:110 [U] ❌ 7O7Y_Bl:9 no longer at interface
2:29 [THR] 0:87 [C] Bl:33 [ASN] B8:74 [U] ❌ 7O7Y_Bl:33 no longer at interface
2:30 [ASP] 0:87 [C] Bl:34 [LYS] B8:74 [U] ❌ 7O7Y_Bl:34 no longer at interface
2:49 [GLU] 0:120 [A] Bl:51 [LEU] B8:110 [U] ❌ 7O7Y_Bl:51 no longer at interface
2:12 [ALA] 0:54 [G] Bl:14 [ALA] B8:46 [G] ❌ 1VQ8_2:12 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L39e 0.75 1.23 0.36 0.84 0.7 0.86 0.92 0.69 0.75 0.24 0.29


Other pairs involving 1VQ8_2_0 or 7O7Y_Bl_B8

Total number of entries: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_1_0 1VQ8_2_0 0.98 1.0 0.52 0.96 Ribosomal protein L39e Archaeal large subunit ribosomal RNA compare
1JJ2_1_0 7O7Y_Bl_B8 0.57 0.75 1.49 0.36 Ribosomal protein L39e compare
1VQ8_2_0 6AZ3_l_7 0.73 0.72 1.25 0.46 Ribosomal protein L39e compare
1VQ8_2_0 1YHQ_2_0 0.99 1.0 0.33 0.98 Ribosomal protein L39e Archaeal large subunit ribosomal RNA compare
1VQ8_2_0 6AZ3_l_1,2 0.73 0.79 1.72 0.41 Ribosomal protein L39e compare
1VQ8_2_0 7O7Y_Bl_B8 0.69 0.75 1.23 0.36 Ribosomal protein L39e compare
1VQ8_2_0 7O7Y_Bl_B5 0.76 0.94 2.08 0.38 Ribosomal protein L39e compare
1YHQ_2_0 7O7Y_Bl_B8 0.72 0.75 1.32 0.36 Ribosomal protein L39e compare
6AZ3_l_7 7O7Y_Bl_B8 0.89 0.92 0.46 0.46 Ribosomal protein L39e 5.8S ribosomal RNA compare