Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
1YHQ_2
|
1YHQ_0
|
6AZ3_l
|
6AZ3_1,2
|
Conserved?
|
---|---|---|---|---|
2:47 [THR] | 0:1417 [G] | l:49 [LEU] | 1:1600 [A] | ✔ |
2:48 [ASP] | 0:1417 [G] | l:50 [ASN] | 1:1600 [A] | ✔ |
2:40 [ARG] | 0:1417 [G] | l:42 [ARG] | 1:1600 [A] | ✔ |
2:40 [ARG] | 0:1418 [U] | l:42 [ARG] | 1:1601 [U] | ✔ |
2:3 [LYS] | 0:1417 [G] | l:5 [LYS] | 1:1600 [A] | ✔ |
2:3 [LYS] | 0:1675 [C] | l:5 [LYS] | 2:1797 [C] | ✔ |
2:3 [LYS] | 0:1676 [G] | l:5 [LYS] | 2:1798 [G] | ✔ |
2:3 [LYS] | 0:1677 [U] | l:5 [LYS] | 2:1799 [U] | ✔ |
2:8 [LYS] | 0:1676 [G] | l:10 [LYS] | 2:1798 [G] | ✔ |
2:8 [LYS] | 0:1677 [U] | l:10 [LYS] | 2:1799 [U] | ✔ |
2:2 [LYS] | 0:1413 [A] | l:4 [PHE] | 1:1596 [A] | ✔ |
2:2 [LYS] | 0:1414 [A] | l:4 [PHE] | 1:1597 [A] | ✔ |
2:2 [LYS] | 0:1486 [A] | l:4 [PHE] | 1:1740 [C] | ✔ |
2:2 [LYS] | 0:1676 [G] | l:4 [PHE] | 2:1798 [G] | ✔ |
2:46 [ASP] | 0:1417 [G] | l:48 [LYS] | 1:1600 [A] | ✔ |
2:46 [ASP] | 0:1687 [C] | l:48 [LYS] | 2:1809 [C] | ✔ |
2:37 [HIS] | 0:462 [A] | l:39 [GLU] | 1:391 [A] | ✔ |
2:37 [HIS] | 0:466 [A] | l:39 [GLU] | 1:395 [A] | ✔ |
2:41 [HIS] | 0:1439 [C] | l:43 [HIS] | 1:1622 [A] | ✔ |
2:41 [HIS] | 0:1440 [U] | l:43 [HIS] | 1:1623 [C] | ✔ |
2:35 [ARG] | 0:462 [A] | l:37 [TRP] | 1:391 [A] | ✔ |
2:15 [ASP] | 0:1418 [U] | l:17 [MET] | 1:1601 [U] | ✔ |
2:1 [GLY] | 0:1414 [A] | l:2 [GLY] | 1:1597 [A] | ✔ |
2:1 [GLY] | 0:1415 [G] | l:2 [GLY] | 1:1598 [G] | ✔ |
2:1 [GLY] | 0:1417 [G] | l:2 [GLY] | 1:1600 [A] | ✔ |
2:11 [LEU] | 0:1417 [G] | l:13 [TYR] | 1:1600 [A] | ✔ |
2:38 [LYS] | 0:465 [U] | l:40 [LYS] | 1:394 [U] | ✔ |
2:38 [LYS] | 0:466 [A] | l:40 [LYS] | 1:395 [A] | ✔ |
2:39 [ARG] | 0:1441 [G] | l:41 [ARG] | 1:1624 [A] | ✔ |
2:45 [ASN] | 0:467 [G] | l:47 [THR] | 1:396 [G] | ✔ |
2:45 [ASN] | 0:1417 [G] | l:47 [THR] | 1:1600 [A] | ✔ |
2:5 [LYS] | 0:1675 [C] | l:7 [LEU] | 2:1797 [C] | ✔ |
2:5 [LYS] | 0:1676 [G] | l:7 [LEU] | 2:1798 [G] | ✔ |
2:20 [ARG] | 0:1441 [G] | l:22 [PRO] | 1:1624 [A] | ✔ |
2:20 [ARG] | 0:1442 [A] | l:22 [PRO] | 1:1625 [C] | ✔ |
2:49 [GLU] | 0:1416 [G] | l:51 [TYR] | 1:1599 [G] | ✔ |
2:42 [TRP] | 0:1416 [G] | l:44 [TRP] | 1:1599 [G] | ✔ |
2:42 [TRP] | 0:1417 [G] | l:44 [TRP] | 1:1600 [A] | ✔ |
2:42 [TRP] | 0:1418 [U] | l:44 [TRP] | 1:1601 [U] | ✔ |
2:42 [TRP] | 0:1419 [U] | l:44 [TRP] | 1:1602 [U] | ✔ |
2:42 [TRP] | 0:1438 [G] | l:44 [TRP] | 1:1621 [U] | ✔ |
2:42 [TRP] | 0:1439 [C] | l:44 [TRP] | 1:1622 [A] | ✔ |
2:42 [TRP] | 0:1685 [A] | l:44 [TRP] | 2:1807 [A] | ✔ |
2:42 [TRP] | 0:1686 [C] | l:44 [TRP] | 2:1808 [C] | ✔ |
2:43 [ARG] | 0:1438 [G] | l:45 [ARG] | 1:1621 [U] | ✔ |
2:43 [ARG] | 0:1684 [A] | l:45 [ARG] | 2:1806 [C] | ✔ |
2:43 [ARG] | 0:1685 [A] | l:45 [ARG] | 2:1807 [A] | ✔ |
2:43 [ARG] | 0:1686 [C] | l:45 [ARG] | 2:1808 [C] | ✔ |
2:43 [ARG] | 0:1691 [A] | l:45 [ARG] | 2:1813 [U] | ✔ |
2:3 [LYS] | 0:1418 [U] | l:5 [LYS] | 1:1601 [U] | ❌ 6AZ3_l_1,2 |
2:3 [LYS] | 0:1486 [A] | l:5 [LYS] | 1:1740 [C] | ❌ 6AZ3_l_1,2 |
2:2 [LYS] | 0:1415 [G] | l:4 [PHE] | 1:1598 [G] | ❌ 6AZ3_l_1,2 |
2:2 [LYS] | 0:1452 [G] | l:4 [PHE] | 1:1635 [G] | ❌ 6AZ3_l_1,2 |
2:37 [HIS] | 0:465 [U] | l:39 [GLU] | 1:394 [U] | ❌ 6AZ3_l_1,2 |
2:41 [HIS] | 0:1418 [U] | l:43 [HIS] | 1:1601 [U] | ❌ 6AZ3_l_1,2 |
2:41 [HIS] | 0:1438 [G] | l:43 [HIS] | 1:1621 [U] | ❌ 6AZ3_l_1,2 |
2:11 [LEU] | 0:1418 [U] | l:13 [TYR] | 1:1601 [U] | ❌ 6AZ3_l_1,2 |
2:39 [ARG] | 0:467 [G] | l:41 [ARG] | 1:396 [G] | ❌ 6AZ3_l_1,2 |
2:45 [ASN] | 0:1416 [G] | l:47 [THR] | 1:1599 [G] | ❌ 6AZ3_l_1,2 |
2:44 [ARG] | 0:1691 [A] | l:46 [ARG] | 2:1813 [U] | ❌ 6AZ3_l_1,2 |
2:8 [LYS] | 0:1675 [C] | l:10 [LYS] | 2:1797 [C] | ❌ 1YHQ_2_0 |
2:11 [LEU] | 0:1416 [G] | l:13 [TYR] | 1:1599 [G] | ❌ 1YHQ_2_0 |
2:15 [ASP] | 0:1417 [G] | l:17 [MET] | 1:1600 [A] | ❌ 1YHQ_2_0 |
2:1 [GLY] | 0:1413 [A] | l:2 [GLY] | 1:1596 [A] | ❌ 1YHQ_2_0 |
2:1 [GLY] | 0:1416 [G] | l:2 [GLY] | 1:1599 [G] | ❌ 1YHQ_2_0 |
2:31 [ARG] | 0:462 [A] | l:36 [LYS] | 1:391 [A] | ❌ 1YHQ_2_0 |
2:36 [ASN] | 0:462 [A] | l:38 [ASN] | 1:391 [A] | ❌ 1YHQ_2_0 |
2:2 [LYS] | 0:1417 [G] | l:4 [PHE] | 1:1600 [A] | ❌ 1YHQ_2_0 |
2:38 [LYS] | 0:462 [A] | l:40 [LYS] | 1:391 [A] | ❌ 1YHQ_2_0 |
2:39 [ARG] | 0:1440 [U] | l:41 [ARG] | 1:1623 [C] | ❌ 1YHQ_2_0 |
2:46 [ASP] | 0:1686 [C] | l:48 [LYS] | 2:1808 [C] | ❌ 1YHQ_2_0 |
2:46 [ASP] | 0:1416 [G] | l:48 [LYS] | 1:1599 [G] | ❌ 1YHQ_2_0 |
2:47 [THR] | 0:1416 [G] | l:49 [LEU] | 1:1599 [G] | ❌ 1YHQ_2_0 |
2:48 [ASP] | 0:1687 [C] | l:50 [ASN] | 2:1809 [C] | ❌ 1YHQ_2_0 |
2:48 [ASP] | 0:1415 [G] | l:50 [ASN] | 1:1598 [G] | ❌ 1YHQ_2_0 |
2:48 [ASP] | 0:1416 [G] | l:50 [ASN] | 1:1599 [G] | ❌ 1YHQ_2_0 |
2:49 [GLU] | 0:1417 [G] | l:51 [TYR] | 1:1600 [A] | ❌ 1YHQ_2_0 |
2:35 [ARG] | 0:514 [G] | l:37 [TRP] | 1:443 [A] | ❌ 6AZ3_1:443 no longer at interface |
2:1 [GLY] | 0:1681 [G] | l:2 [GLY] | 2:1803 [C] | ❌ 6AZ3_2:21 no longer at interface |
2:5 [LYS] | 0:1674 [C] | l:7 [LEU] | 2:1796 [C] | ❌ 6AZ3_2:14 no longer at interface |
2:44 [ARG] | 0:1690 [C] | l:46 [ARG] | 2:1812 [A] | ❌ 6AZ3_2:30 no longer at interface |
2:31 [ARG] | 0:513 [A] | l:36 [LYS] | 1:442 [A] | ❌ 6AZ3_1:442 no longer at interface |
2:15 [ASP] | 0:1445 [G] | l:17 [MET] | 1:1628 [OMG] | ❌ 1YHQ_0:1445 no longer at interface |
2:1 [GLY] | 0:1680 [C] | l:2 [GLY] | 2:1802 [U] | ❌ 1YHQ_0:1680 no longer at interface |
2:1 [GLY] | 0:1679 [C] | l:2 [GLY] | 2:1801 [C] | ❌ 1YHQ_0:1679 no longer at interface |
2:37 [HIS] | 0:463 [A] | l:39 [GLU] | 1:392 [A] | ❌ 1YHQ_0:463 no longer at interface |
2:37 [HIS] | 0:477 [A] | l:39 [GLU] | 1:406 [A] | ❌ 1YHQ_0:477 no longer at interface |
2:44 [ARG] | 0:468 [U] | l:46 [ARG] | 1:397 [C] | ❌ 1YHQ_0:468 no longer at interface |
2:45 [ASN] | 0:468 [U] | l:47 [THR] | 1:397 [C] | ❌ 1YHQ_0:468 no longer at interface |
2:19 [SER] | 0:1442 [A] | l:21 [LYS] | 1:1625 [C] | ❌ 6AZ3_l:21 no longer at interface |
2:4 [SER] | 0:1675 [C] | l:6 [PRO] | 2:1797 [C] | ❌ 6AZ3_l:6 no longer at interface |
2:4 [SER] | 0:1676 [G] | l:6 [PRO] | 2:1798 [G] | ❌ 6AZ3_l:6 no longer at interface |
2:18 [ASN] | 0:1418 [U] | l:20 [ASN] | 1:1601 [U] | ❌ 1YHQ_2:18 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribosomal protein L39e | 0.79 | 1.93 | 0.38 | 0.81 | 0.79 | 0.86 | 0.74 | 0.73 | 0.77 | 0.23 | 0.36 |
Other pairs involving 1YHQ_2_0 or 6AZ3_l_1,2
Total number of entries: 9
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6AZ3_l_1,2 | 7O7Y_Bl_B5 | 0.84 | 0.92 | 1.02 | 0.52 | Ribosomal protein L39e | Eukaryotic large subunit ribosomal RNA | compare |
1YHQ_2_0 | 6AZ3_l_7 | 0.79 | 0.72 | 1.34 | 0.42 | Ribosomal protein L39e | compare | |
1YHQ_2_0 | 6AZ3_l_1,2 | 0.73 | 0.79 | 1.93 | 0.38 | Ribosomal protein L39e | compare | |
1YHQ_2_0 | 7O7Y_Bl_B5 | 0.76 | 0.94 | 2.21 | 0.38 | Ribosomal protein L39e | compare | |
1YHQ_2_0 | 7O7Y_Bl_B8 | 0.72 | 0.75 | 1.32 | 0.36 | Ribosomal protein L39e | compare | |
1JJ2_1_0 | 1YHQ_2_0 | 0.99 | 1.0 | 0.29 | 0.95 | Ribosomal protein L39e | Archaeal large subunit ribosomal RNA | compare |
1JJ2_1_0 | 6AZ3_l_1,2 | 0.76 | 0.79 | 1.79 | 0.38 | Ribosomal protein L39e | compare | |
1VQ8_2_0 | 1YHQ_2_0 | 0.99 | 1.0 | 0.33 | 0.98 | Ribosomal protein L39e | Archaeal large subunit ribosomal RNA | compare |
1VQ8_2_0 | 6AZ3_l_1,2 | 0.73 | 0.79 | 1.72 | 0.41 | Ribosomal protein L39e | compare |