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All interfaces > All interologs > Interface groups > group105 > 6AZ3_l_1,2

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Contacts -

6AZ3_l
6AZ3_1,2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
l:2 [GLY] 1:1596 [A] 3.49 61.1
l:2 [GLY] 1:1597 [A] 4.21 2:1803 [C] 61.1
l:2 [GLY] 1:1598 [G] 2.67 2:1802 [U] base:BB 61.1
l:2 [GLY] 1:1599 [G] 2.53 2:1801 [C] base:BB 61.1
l:2 [GLY] 1:1600 [A] 3.29 2:1800 [A] base:BB 61.1
l:2 [GLY] 2:1801 [C] 3.56 1:1599 [G] base:BB 61.1
l:2 [GLY] 2:1802 [U] 3.51 1:1598 [G] 61.1
l:3 [ARG] 1:1596 [A] 2.74 62.9
l:3 [ARG] 1:1597 [A] 4.5 2:1803 [C] 62.9
l:3 [ARG] 1:1635 [G] 3.46 2:1797 [C] 62.9
l:3 [ARG] 1:1740 [C] 2.42 base:SC 62.9
l:3 [ARG] 2:1798 [G] 2.37 1:1634 [C] base:SC, sugar:BB 62.9
l:3 [ARG] 2:1799 [U] 3.66 1:1631 [G] 62.9
l:4 [PHE] 1:1596 [A] 4.52 28.7
l:4 [PHE] 1:1597 [A] 3.66 2:1803 [C] 28.7
l:4 [PHE] 1:1600 [A] 4.06 2:1800 [A] 28.7
l:4 [PHE] 1:1740 [C] 3.2 base/AA stacks 28.7
l:4 [PHE] 2:1798 [G] 3.96 1:1634 [C] 28.7
l:5 [LYS] 1:1600 [A] 3.24 2:1800 [A] 87.2
l:5 [LYS] 2:1797 [C] 4.86 1:1635 [G] 87.2
l:5 [LYS] 2:1798 [G] 2.91 1:1634 [C] 87.2
l:5 [LYS] 2:1799 [U] 2.64 1:1631 [G] 87.2
l:7 [LEU] 2:1797 [C] 3.6 1:1635 [G] 3.3
l:7 [LEU] 2:1798 [G] 3.34 1:1634 [C] 3.3
l:10 [LYS] 2:1797 [C] 4.91 1:1635 [G] 98.5
l:10 [LYS] 2:1798 [G] 2.48 1:1634 [C] 98.5
l:10 [LYS] 2:1799 [U] 2.89 1:1631 [G] 98.5
l:13 [TYR] 1:1599 [G] 4.28 2:1801 [C] 73.6
l:13 [TYR] 1:1600 [A] 2.74 2:1800 [A] base/AA stacks 73.6
l:17 [MET] 1:1600 [A] 4.63 2:1800 [A] 0.0
l:17 [MET] 1:1601 [U] 3.29 1:1629 [U] 0.0
l:17 [MET] 1:1628 [OMG] 4.06 0.0
l:20 [ASN] 1:1601 [U] 4.99 1:1629 [U] 90.9
l:22 [PRO] 1:1624 [A] 3.57 1:1606 [U] 62.6
l:22 [PRO] 1:1625 [C] 4.09 1:1605 [G] 62.6
l:33 [ASN] 1:409 [U] 4.4 69.3
l:34 [ARG] 1:390 [C] 3.29 base:SC 52.4
l:34 [ARG] 1:391 [A] 3.31 52.4
l:34 [ARG] 1:409 [U] 2.52 sugar:SC base/AA stacks 52.4
l:34 [ARG] 1:410 [U] 4.96 7:19 [A] 52.4
l:35 [ILE] 1:391 [A] 3.39 74.2
l:36 [LYS] 1:391 [A] 5.0 70.0
l:37 [TRP] 1:391 [A] 2.46 base:BB 3.9
l:38 [ASN] 1:391 [A] 2.83 76.0
l:39 [GLU] 1:391 [A] 3.83 base/AA stacks 48.6
l:39 [GLU] 1:392 [A] 4.97 1:406 [A] 48.6
l:39 [GLU] 1:395 [A] 4.13 1:404 [G] 48.6
l:39 [GLU] 1:406 [A] 4.78 1:392 [A] 48.6
l:40 [LYS] 1:391 [A] 4.31 51.4
l:40 [LYS] 1:394 [U] 4.09 1:405 [A] 51.4
l:40 [LYS] 1:395 [A] 4.08 1:404 [G] 51.4
l:41 [ARG] 1:1623 [C] 4.87 1:1607 [G] 56.4
l:41 [ARG] 1:1624 [A] 2.75 1:1606 [U] 56.4
l:42 [ARG] 1:1600 [A] 4.37 2:1800 [A] 93.2
l:42 [ARG] 1:1601 [U] 2.63 1:1629 [U] 93.2
l:43 [HIS] 1:1622 [A] 3.26 1:1608 [C] 62.2
l:43 [HIS] 1:1623 [C] 3.55 1:1607 [G] 62.2
l:44 [TRP] 1:1599 [G] 4.43 2:1801 [C] 73.9
l:44 [TRP] 1:1600 [A] 4.06 2:1800 [A] 73.9
l:44 [TRP] 1:1601 [U] 3.69 1:1629 [U] 73.9
l:44 [TRP] 1:1602 [U] 2.93 base/AA stacks 73.9
l:44 [TRP] 1:1621 [U] 4.15 73.9
l:44 [TRP] 1:1622 [A] 3.54 1:1608 [C] 73.9
l:44 [TRP] 2:1807 [A] 3.74 73.9
l:44 [TRP] 2:1808 [C] 3.55 2:1817 [G] 73.9
l:45 [ARG] 1:1621 [U] 3.27 91.6
l:45 [ARG] 2:1806 [C] 3.05 base:SC, base:SC 91.6
l:45 [ARG] 2:1807 [A] 3.32 sugar:SC 91.6
l:45 [ARG] 2:1808 [C] 4.76 2:1817 [G] 91.6
l:45 [ARG] 2:1813 [U] 3.32 91.6
l:46 [ARG] 1:397 [C] 4.46 1:402 [G] 64.5
l:47 [THR] 1:396 [G] 3.45 1:403 [C] 45.1
l:47 [THR] 1:397 [C] 3.59 1:402 [G] 45.1
l:47 [THR] 1:1600 [A] 4.03 2:1800 [A] 45.1
l:48 [LYS] 1:1599 [G] 2.78 2:1801 [C] sugar:SC 60.8
l:48 [LYS] 1:1600 [A] 3.29 2:1800 [A] 60.8
l:48 [LYS] 2:1808 [C] 2.76 2:1817 [G] 60.8
l:48 [LYS] 2:1809 [C] 3.88 2:1816 [G] 60.8
l:49 [LEU] 1:1599 [G] 4.76 2:1801 [C] 66.7
l:49 [LEU] 1:1600 [A] 2.8 2:1800 [A] 66.7
l:50 [ASN] 1:1598 [G] 4.13 2:1802 [U] 55.3
l:50 [ASN] 1:1599 [G] 2.94 2:1801 [C] 55.3
l:50 [ASN] 1:1600 [A] 3.18 2:1800 [A] 55.3
l:50 [ASN] 2:1809 [C] 4.78 2:1816 [G] 55.3
l:51 [TYR] 1:1599 [G] 4.26 2:1801 [C] 4.1
l:51 [TYR] 1:1600 [A] 4.31 2:1800 [A] 4.1

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group105 6AZ3_l_1,2 l: 60s ribosomal protein l39, putative, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) E9BCX6 Ribosomal protein L39e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_l_1,2 7O7Y_Bl_B5 0.84 0.92 1.02 0.52 Ribosomal protein L39e Eukaryotic large subunit ribosomal RNA compare
1VQ8_2_0 6AZ3_l_1,2 0.73 0.79 1.72 0.41 Ribosomal protein L39e compare
1JJ2_1_0 6AZ3_l_1,2 0.76 0.79 1.79 0.38 Ribosomal protein L39e compare
1YHQ_2_0 6AZ3_l_1,2 0.73 0.79 1.93 0.38 Ribosomal protein L39e compare