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All interfaces > All interologs > Interface groups > group105 > 6AZ3_l_7

Interface analysis

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_l
6AZ3_7
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
l:4 [PHE] 7:110 [A] 3.71 28.73
l:6 [PRO] 7:110 [A] 3.73 45.61
l:6 [PRO] 7:111 [C] 4.0 7:108 [A] 45.61
l:6 [PRO] 7:112 [G] 3.9 45.61
l:7 [LEU] 7:112 [G] 3.21 3.37
l:8 [ALA] 7:111 [C] 4.57 7:108 [A] 21.34
l:8 [ALA] 7:112 [G] 4.68 21.34
l:9 [VAL] 7:110 [A] 4.47 20.98
l:11 [LYS] 7:45 [C] 3.96 7:58 [G] 10.5
l:11 [LYS] 7:46 [G] 5.0 7:57 [C] 10.5
l:11 [LYS] 7:112 [G] 3.73 base:SC 10.5
l:12 [LYS] 7:44 [A] 3.71 7:99 [U] 79.35
l:12 [LYS] 7:45 [C] 3.57 7:58 [G] 79.35
l:14 [ALA] 7:46 [G] 4.95 7:57 [C] 54.67
l:15 [LYS] 7:45 [C] 2.91 7:58 [G] 66.37
l:15 [LYS] 7:46 [G] 3.84 7:57 [C] 66.37
l:16 [LYS] 7:45 [C] 4.54 7:58 [G] 61.91
l:18 [ASN] 7:46 [G] 4.54 7:57 [C] 53.03
l:18 [ASN] 7:52 [A] 3.4 53.03
l:19 [GLN] 7:52 [A] 2.51 sugar:BB 64.27
l:19 [GLN] 7:53 [A] 3.62 64.27
l:20 [ASN] 7:52 [A] 4.61 90.96
l:21 [LYS] 7:52 [A] 3.33 56.3
l:22 [PRO] 7:52 [A] 4.12 62.66
l:23 [VAL] 7:52 [A] 3.57 72.95
l:24 [PRO] 7:51 [A] 4.31 99.0
l:24 [PRO] 7:52 [A] 3.68 99.0
l:26 [TRP] 7:50 [U] 3.28 7:75 [OMG] sugar:SC base/AA stacks 85.15
l:26 [TRP] 7:51 [A] 3.45 85.15
l:26 [TRP] 7:75 [OMG] 3.33 7:50 [U] base/AA stacks 85.15
l:27 [ILE] 7:51 [A] 4.16 81.7
l:27 [ILE] 7:52 [A] 3.37 81.7
l:27 [ILE] 7:53 [A] 5.0 81.7
l:29 [LEU] 7:75 [OMG] 2.99 7:50 [U] 31.82
l:30 [ARG] 7:51 [A] 4.01 74.41
l:30 [ARG] 7:52 [A] 4.59 74.41
l:30 [ARG] 7:53 [A] 4.82 74.41
l:30 [ARG] 7:75 [OMG] 3.52 7:50 [U] 74.41
l:31 [THR] 7:74 [U] 4.86 97.47
l:31 [THR] 7:75 [OMG] 2.65 7:50 [U] 97.47
l:35 [ILE] 7:52 [A] 3.54 74.26
l:35 [ILE] 7:53 [A] 3.52 74.26
l:38 [ASN] 7:52 [A] 2.92 base:SC, sugar:SC 76.07
l:38 [ASN] 7:53 [A] 4.28 76.07
l:40 [LYS] 7:53 [A] 3.16 sugar:SC 51.46
l:40 [LYS] 7:54 [G] 3.95 7:48 [A] 51.46
l:51 [TYR] 7:110 [A] 4.07 4.17

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group105 6AZ3_l_7 l: 60s ribosomal protein l39, putative, Leishmania donovani (natural) 7: rRNA 5.8s, Leishmania donovani (natural) E9BCX6 Ribosomal protein L39e 5.8S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_2_0 6AZ3_l_7 0.79 0.72 1.34 0.42 Ribosomal protein L39e compare
1JJ2_1_0 6AZ3_l_7 0.63 0.72 1.52 0.42 Ribosomal protein L39e compare
6AZ3_l_7 7O7Y_Bl_B8 0.89 0.92 0.46 0.46 Ribosomal protein L39e 5.8S ribosomal RNA compare
1VQ8_2_0 6AZ3_l_7 0.73 0.72 1.25 0.46 Ribosomal protein L39e compare