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All interfaces > All interologs > Interface groups > group105 > 7O7Y_Bl_B5

Interface analysis

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_Bl
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Bl:2 [SER] B5:2247 [A] 3.38 B5:2629 [C] 0.0
Bl:2 [SER] B5:2248 [G] 3.38 B5:2628 [C] 0.0
Bl:2 [SER] B5:2249 [G] 2.63 B5:2627 [C] base:BB, base:BB 0.0
Bl:2 [SER] B5:2250 [G] 2.44 base:BB 0.0
Bl:2 [SER] B5:2627 [C] 4.32 B5:2249 [G] 0.0
Bl:3 [SER] B5:2246 [A] 3.95 0.0
Bl:3 [SER] B5:2247 [A] 4.66 B5:2629 [C] 0.0
Bl:3 [SER] B5:2248 [G] 4.64 B5:2628 [C] 0.0
Bl:3 [SER] B5:2249 [G] 3.8 B5:2627 [C] 0.0
Bl:3 [SER] B5:2624 [G] 2.55 B5:2284 [C] sugar:BB 0.0
Bl:3 [SER] B5:2625 [U] 3.19 B5:2281 [A] 0.0
Bl:3 [SER] B5:2626 [A] 2.58 B5:2252 [U] 0.0
Bl:3 [SER] B5:2627 [C] 2.98 B5:2249 [G] base:SC 0.0
Bl:3 [SER] B5:2628 [C] 4.83 B5:2248 [G] 0.0
Bl:4 [HIS] B5:2246 [A] 4.05 0.0
Bl:4 [HIS] B5:2247 [A] 3.2 B5:2629 [C] 0.0
Bl:4 [HIS] B5:2250 [G] 4.93 0.0
Bl:4 [HIS] B5:2285 [G] 4.41 B5:2623 [C] 0.0
Bl:4 [HIS] B5:2355 [A] 3.11 base/AA stacks 0.0
Bl:4 [HIS] B5:2624 [G] 3.52 B5:2284 [C] 0.0
Bl:5 [LYS] B5:2249 [G] 4.91 B5:2627 [C] 0.0
Bl:5 [LYS] B5:2250 [G] 3.48 0.0
Bl:5 [LYS] B5:2251 [U] 4.58 B5:2279 [U] 0.0
Bl:5 [LYS] B5:2355 [A] 2.95 base:BB 0.0
Bl:5 [LYS] B5:2623 [C] 4.31 B5:2285 [G] 0.0
Bl:5 [LYS] B5:2624 [G] 3.26 B5:2284 [C] sugar:BB 0.0
Bl:5 [LYS] B5:2625 [U] 2.99 B5:2281 [A] 0.0
Bl:5 [LYS] B5:2626 [A] 4.86 B5:2252 [U] 0.0
Bl:6 [THR] B5:2355 [A] 4.32 0.0
Bl:6 [THR] B5:2623 [C] 4.57 B5:2285 [G] 0.0
Bl:6 [THR] B5:2624 [G] 4.5 B5:2284 [C] 0.0
Bl:7 [PHE] B5:2623 [C] 3.74 B5:2285 [G] 0.0
Bl:7 [PHE] B5:2624 [G] 4.19 B5:2284 [C] 0.0
Bl:9 [ILE] B5:2250 [G] 4.83 0.0
Bl:10 [LYS] B5:2624 [G] 2.93 B5:2284 [C] 0.0
Bl:10 [LYS] B5:2625 [U] 2.46 B5:2281 [A] 0.0
Bl:13 [LEU] B5:2250 [G] 3.51 0.0
Bl:16 [LYS] B5:2251 [U] 4.92 B5:2279 [U] 0.0
Bl:17 [GLN] B5:2251 [U] 3.98 B5:2279 [U] 0.0
Bl:17 [GLN] B5:2278 [G] 4.16 0.0
Bl:21 [ARG] B5:2275 [U] 4.83 B5:2255 [A] 0.0
Bl:22 [PRO] B5:2274 [A] 3.78 B5:2256 [U] 0.0
Bl:22 [PRO] B5:2275 [U] 3.9 B5:2255 [A] 0.0
Bl:28 [TRP] B5:412 [G] 4.01 0.0
Bl:34 [LYS] B5:361 [C] 3.4 0.0
Bl:34 [LYS] B5:362 [A] 3.09 0.0
Bl:35 [ILE] B5:362 [A] 3.55 0.0
Bl:36 [ARG] B5:362 [A] 4.84 0.0
Bl:36 [ARG] B5:413 [G] 3.21 base/AA stacks 0.0
Bl:37 [TYR] B5:362 [A] 2.56 base:BB 0.0
Bl:37 [TYR] B5:413 [G] 2.95 base:SC 0.0
Bl:38 [ASN] B5:362 [A] 3.85 0.0
Bl:39 [SER] B5:362 [A] 2.94 base:BB 0.0
Bl:39 [SER] B5:366 [A] 4.75 B5:375 [G] 0.0
Bl:40 [LYS] B5:362 [A] 3.93 0.0
Bl:40 [LYS] B5:365 [U] 3.32 B5:376 [A] 0.0
Bl:40 [LYS] B5:366 [A] 4.29 B5:375 [G] 0.0
Bl:41 [ARG] B5:2273 [C] 4.94 B5:2257 [G] 0.0
Bl:41 [ARG] B5:2274 [A] 2.81 B5:2256 [U] 0.0
Bl:42 [ARG] B5:2250 [G] 4.04 0.0
Bl:42 [ARG] B5:2251 [U] 2.51 B5:2279 [U] 0.0
Bl:43 [HIS] B5:2251 [U] 4.89 B5:2279 [U] 0.0
Bl:43 [HIS] B5:2271 [A] 4.38 0.0
Bl:43 [HIS] B5:2272 [A] 2.4 B5:2258 [OMU] 0.0
Bl:43 [HIS] B5:2273 [C] 3.43 B5:2257 [G] 0.0
Bl:44 [TRP] B5:2249 [G] 4.54 B5:2627 [C] 0.0
Bl:44 [TRP] B5:2250 [G] 3.94 0.0
Bl:44 [TRP] B5:2251 [U] 3.25 B5:2279 [U] 0.0
Bl:44 [TRP] B5:2252 [U] 2.99 B5:2626 [A] 0.0
Bl:44 [TRP] B5:2271 [A] 3.79 0.0
Bl:44 [TRP] B5:2272 [A] 2.78 B5:2258 [OMU] 0.0
Bl:44 [TRP] B5:2633 [U] 3.39 base/AA stacks 0.0
Bl:44 [TRP] B5:2634 [C] 3.9 B5:2643 [G] 0.0
Bl:45 [ARG] B5:2271 [A] 3.72 0.0
Bl:45 [ARG] B5:2632 [A] 3.17 base:SC 0.0
Bl:45 [ARG] B5:2633 [U] 3.38 0.0
Bl:45 [ARG] B5:2634 [C] 4.03 B5:2643 [G] 0.0
Bl:45 [ARG] B5:2638 [A] 4.63 0.0
Bl:45 [ARG] B5:2639 [G] 3.4 0.0
Bl:46 [ARG] B5:368 [C] 4.99 B5:373 [G] 0.0
Bl:46 [ARG] B5:2272 [A] 3.83 B5:2258 [OMU] 0.0
Bl:46 [ARG] B5:2273 [C] 3.67 B5:2257 [G] 0.0
Bl:46 [ARG] B5:2638 [A] 4.43 0.0
Bl:47 [THR] B5:367 [C] 3.72 B5:374 [G] 0.0
Bl:47 [THR] B5:368 [C] 4.02 B5:373 [G] 0.0
Bl:47 [THR] B5:2250 [G] 4.33 0.0
Bl:48 [LYS] B5:368 [C] 4.84 B5:373 [G] 0.0
Bl:48 [LYS] B5:2249 [G] 2.85 B5:2627 [C] sugar:SC 0.0
Bl:48 [LYS] B5:2250 [G] 3.4 0.0
Bl:48 [LYS] B5:2634 [C] 2.88 B5:2643 [G] 0.0
Bl:48 [LYS] B5:2635 [C] 3.26 B5:2642 [G] 0.0
Bl:49 [LEU] B5:2250 [G] 2.84 0.0
Bl:50 [GLY] B5:2249 [G] 4.55 B5:2627 [C] 0.0
Bl:50 [GLY] B5:2250 [G] 4.75 0.0
Bl:51 [LEU] B5:2249 [G] 3.05 B5:2627 [C] 0.0
Bl:51 [LEU] B5:2250 [G] 2.94 base:BB, base:SC 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group105 7O7Y_Bl_B5 Bl: El39, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1TTN1 Ribosomal protein L39e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_2_0 7O7Y_Bl_B5 0.76 0.94 2.21 0.38 Ribosomal protein L39e compare
1JJ2_1_0 7O7Y_Bl_B5 0.80 0.94 2.12 0.34 Ribosomal protein L39e compare
1VQ8_2_0 7O7Y_Bl_B5 0.76 0.94 2.08 0.38 Ribosomal protein L39e compare
6AZ3_l_1,2 7O7Y_Bl_B5 0.84 0.92 1.02 0.52 Ribosomal protein L39e Eukaryotic large subunit ribosomal RNA compare