Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7O7Y_Bl
|
7O7Y_B8
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| Bl:5 [LYS] | B8:111 [U] | 4.8 | 0.0 | |||
| Bl:6 [THR] | B8:111 [U] | 3.25 | 0.0 | |||
| Bl:7 [PHE] | B8:111 [U] | 2.83 | base/AA stacks | 0.0 | ||
| Bl:8 [ARG] | B8:109 [C] | 3.55 | base:SC | 0.0 | ||
| Bl:8 [ARG] | B8:110 [U] | 3.71 | B8:108 [A] | 0.0 | ||
| Bl:8 [ARG] | B8:111 [U] | 4.81 | 0.0 | |||
| Bl:11 [ARG] | B8:44 [A] | 3.57 | B8:99 [U] | 0.0 | ||
| Bl:11 [ARG] | B8:45 [C] | 3.89 | B8:58 [G] | 0.0 | ||
| Bl:11 [ARG] | B8:46 [G] | 4.72 | B8:57 [C] | 0.0 | ||
| Bl:12 [PHE] | B8:45 [C] | 3.65 | B8:58 [G] | 0.0 | ||
| Bl:14 [ALA] | B8:46 [G] | 4.86 | B8:57 [C] | 0.0 | ||
| Bl:15 [LYS] | B8:44 [A] | 4.94 | B8:99 [U] | 0.0 | ||
| Bl:15 [LYS] | B8:45 [C] | 2.58 | B8:58 [G] | 0.0 | ||
| Bl:15 [LYS] | B8:46 [G] | 3.95 | B8:57 [C] | 0.0 | ||
| Bl:18 [LYS] | B8:45 [C] | 4.92 | B8:58 [G] | 0.0 | ||
| Bl:18 [LYS] | B8:46 [G] | 2.47 | B8:57 [C] | 0.0 | ||
| Bl:18 [LYS] | B8:52 [A] | 4.03 | 0.0 | |||
| Bl:19 [GLN] | B8:52 [A] | 2.87 | sugar:BB | 0.0 | ||
| Bl:19 [GLN] | B8:53 [G] | 2.68 | 0.0 | |||
| Bl:21 [ARG] | B8:51 [U] | 3.16 | 0.0 | |||
| Bl:21 [ARG] | B8:52 [A] | 2.67 | 0.0 | |||
| Bl:22 [PRO] | B8:52 [A] | 4.63 | 0.0 | |||
| Bl:23 [ILE] | B8:52 [A] | 3.55 | 0.0 | |||
| Bl:24 [PRO] | B8:51 [U] | 3.69 | 0.0 | |||
| Bl:24 [PRO] | B8:52 [A] | 3.59 | 0.0 | |||
| Bl:26 [TRP] | B8:50 [C] | 3.71 | B8:75 [OMG] | base/AA stacks | 0.0 | |
| Bl:26 [TRP] | B8:51 [U] | 3.25 | 0.0 | |||
| Bl:26 [TRP] | B8:75 [OMG] | 3.26 | B8:50 [C] | base/AA stacks | 0.0 | |
| Bl:27 [ILE] | B8:51 [U] | 4.53 | 0.0 | |||
| Bl:27 [ILE] | B8:52 [A] | 3.46 | 0.0 | |||
| Bl:29 [MET] | B8:75 [OMG] | 3.08 | B8:50 [C] | 0.0 | ||
| Bl:30 [LYS] | B8:51 [U] | 4.23 | 0.0 | |||
| Bl:30 [LYS] | B8:75 [OMG] | 3.37 | B8:50 [C] | 0.0 | ||
| Bl:31 [THR] | B8:74 [U] | 4.97 | 0.0 | |||
| Bl:31 [THR] | B8:75 [OMG] | 2.86 | B8:50 [C] | 0.0 | ||
| Bl:35 [ILE] | B8:52 [A] | 3.53 | 0.0 | |||
| Bl:35 [ILE] | B8:53 [G] | 3.35 | 0.0 | |||
| Bl:38 [ASN] | B8:52 [A] | 3.23 | sugar:SC | 0.0 | ||
| Bl:38 [ASN] | B8:53 [G] | 4.98 | 0.0 | |||
| Bl:40 [LYS] | B8:53 [G] | 3.13 | sugar:SC | 0.0 | ||
| Bl:40 [LYS] | B8:54 [C] | 3.92 | 0.0 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group105 | 7O7Y_Bl_B8 | Bl: El39, Oryctolagus cuniculus (natural) B8: 5.8s rRNA, Oryctolagus cuniculus (natural) | G1TTN1 | Ribosomal protein L39e | 5.8S ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 4
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 1YHQ_2_0 | 7O7Y_Bl_B8 | 0.72 | 0.75 | 1.32 | 0.36 | Ribosomal protein L39e | compare | |
| 1JJ2_1_0 | 7O7Y_Bl_B8 | 0.57 | 0.75 | 1.49 | 0.36 | Ribosomal protein L39e | compare | |
| 1VQ8_2_0 | 7O7Y_Bl_B8 | 0.69 | 0.75 | 1.23 | 0.36 | Ribosomal protein L39e | compare | |
| 6AZ3_l_7 | 7O7Y_Bl_B8 | 0.89 | 0.92 | 0.46 | 0.46 | Ribosomal protein L39e | 5.8S ribosomal RNA | compare |