RNAprotDB

All interfaces > All interologs > Interface groups > group106 > 1JJ2_L_0 vs 6AZ3_M_2

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1JJ2_L
1JJ2_0
6AZ3_M
6AZ3_2
Conserved?
L:76 [ARG] 0:1864 [C] M:75 [VAL] 2:412 [A] ✔
L:32 [ARG] 0:2133 [U] M:31 [ARG] 2:680 [U] ✔
L:32 [ARG] 0:2244 [A] M:31 [ARG] 2:761 [A] ✔
L:32 [ARG] 0:2245 [C] M:31 [ARG] 2:762 [U] ✔
L:71 [SER] 0:2263 [G] M:70 [GLY] 2:1026 [G] ✔
L:71 [SER] 0:2264 [A] M:70 [GLY] 2:1027 [C] ✔
L:81 [ARG] 0:2274 [A] M:82 [GLY] 2:1037 [A] ✔
L:81 [ARG] 0:2275 [G] M:82 [GLY] 2:1038 [G] ✔
L:25 [TRP] 0:2133 [U] M:24 [ARG] 2:680 [U] ✔
L:25 [TRP] 0:2243 [C] M:24 [ARG] 2:760 [U] ✔
L:25 [TRP] 0:2244 [A] M:24 [ARG] 2:761 [A] ✔
L:74 [ARG] 0:1864 [C] M:73 [ARG] 2:412 [A] ✔
L:73 [ARG] 0:1864 [C] M:72 [LYS] 2:412 [A] ✔
L:73 [ARG] 0:1865 [A] M:72 [LYS] 2:413 [A] ✔
L:88 [VAL] 0:2122 [C] M:89 [VAL] 2:669 [C] ✔
L:88 [VAL] 0:2123 [A] M:89 [VAL] 2:670 [A] ✔
L:90 [ARG] 0:2123 [A] M:91 [GLY] 2:670 [A] ✔
L:83 [SER] 0:2121 [G] M:84 [PRO] 2:668 [C] ✔
L:80 [GLY] 0:2274 [A] M:81 [TYR] 2:1037 [A] ✔
L:80 [GLY] 0:2275 [G] M:81 [TYR] 2:1038 [G] ✔
L:70 [GLY] 0:2263 [G] M:69 [GLY] 2:1026 [G] ✔
L:70 [GLY] 0:2264 [A] M:69 [GLY] 2:1027 [C] ✔
L:79 [LYS] 0:2274 [A] M:80 [THR] 2:1037 [A] ✔
L:87 [MET] 0:2122 [C] M:88 [GLY] 2:669 [C] ✔
L:87 [MET] 0:2123 [A] M:88 [GLY] 2:670 [A] ✔
L:89 [ASN] 0:2123 [A] M:90 [LEU] 2:670 [A] ✔
L:89 [ASN] 0:2124 [G] M:90 [LEU] 2:671 [G] ✔
L:124 [GLY] 0:2132 [C] M:125 [SER] 2:679 [C] ✔
L:124 [GLY] 0:2262 [C] M:125 [SER] 2:1025 [U] ✔
L:124 [GLY] 0:2263 [G] M:125 [SER] 2:1026 [G] ✔
L:69 [LYS] 0:2263 [G] M:68 [ARG] 2:1026 [G] ✔
L:123 [ASP] 0:2132 [C] M:124 [ASP] 2:679 [C] ✔
L:29 [GLN] 0:2244 [A] M:28 [TRP] 2:761 [A] ✔
L:29 [GLN] 0:2245 [C] M:28 [TRP] 2:762 [U] ✔
L:82 [ARG] 0:2275 [G] M:83 [LYS] 2:1038 [G] ✔
L:75 [THR] 0:1864 [C] M:74 [PRO] 2:412 [A] ✔
L:125 [ARG] 0:2262 [C] M:126 [THR] 2:1025 [U] ✔
L:86 [MET] 0:2121 [G] M:87 [SER] 2:668 [C] ✔
L:86 [MET] 0:2122 [C] M:87 [SER] 2:669 [C] ✔
L:76 [ARG] 0:2121 [G] M:75 [VAL] 2:668 [C] ❌ 6AZ3_M_2
L:76 [ARG] 0:2122 [C] M:75 [VAL] 2:669 [C] ❌ 6AZ3_M_2
L:76 [ARG] 0:2123 [A] M:75 [VAL] 2:670 [A] ❌ 6AZ3_M_2
L:76 [ARG] 0:2273 [C] M:75 [VAL] 2:1036 [G] ❌ 6AZ3_M_2
L:76 [ARG] 0:2274 [A] M:75 [VAL] 2:1037 [A] ❌ 6AZ3_M_2
L:32 [ARG] 0:2132 [C] M:31 [ARG] 2:679 [C] ❌ 6AZ3_M_2
L:73 [ARG] 0:2263 [G] M:72 [LYS] 2:1026 [G] ❌ 6AZ3_M_2
L:90 [ARG] 0:2265 [U] M:91 [GLY] 2:1028 [C] ❌ 6AZ3_M_2
L:83 [SER] 0:2122 [C] M:84 [PRO] 2:669 [C] ❌ 6AZ3_M_2
L:77 [PHE] 0:2121 [G] M:76 [HIS] 2:668 [C] ❌ 6AZ3_M_2
L:77 [PHE] 0:2122 [C] M:76 [HIS] 2:669 [C] ❌ 6AZ3_M_2
L:77 [PHE] 0:2273 [C] M:76 [HIS] 2:1036 [G] ❌ 6AZ3_M_2
L:77 [PHE] 0:2274 [A] M:76 [HIS] 2:1037 [A] ❌ 6AZ3_M_2
L:89 [ASN] 0:2122 [C] M:90 [LEU] 2:669 [C] ❌ 6AZ3_M_2
L:89 [ASN] 0:2264 [A] M:90 [LEU] 2:1027 [C] ❌ 6AZ3_M_2
L:89 [ASN] 0:2265 [U] M:90 [LEU] 2:1028 [C] ❌ 6AZ3_M_2
L:82 [ARG] 0:2274 [A] M:83 [LYS] 2:1037 [A] ❌ 6AZ3_M_2
L:125 [ARG] 0:2245 [C] M:126 [THR] 2:762 [U] ❌ 6AZ3_M_2
L:125 [ARG] 0:2263 [G] M:126 [THR] 2:1026 [G] ❌ 6AZ3_M_2
L:86 [MET] 0:2123 [A] M:87 [SER] 2:670 [A] ❌ 6AZ3_M_2
L:86 [MET] 0:2274 [A] M:87 [SER] 2:1037 [A] ❌ 6AZ3_M_2
L:86 [MET] 0:2275 [G] M:87 [SER] 2:1038 [G] ❌ 6AZ3_M_2
L:73 [ARG] 0:2124 [G] M:72 [LYS] 2:671 [G] ❌ 1JJ2_L_0
L:73 [ARG] 0:2123 [A] M:72 [LYS] 2:670 [A] ❌ 1JJ2_L_0
L:77 [PHE] 0:1864 [C] M:76 [HIS] 2:412 [A] ❌ 1JJ2_L_0
L:78 [ASN] 0:2274 [A] M:79 [ILE] 2:1037 [A] ❌ 1JJ2_L_0
L:78 [ASN] 0:2273 [C] M:79 [ILE] 2:1036 [G] ❌ 1JJ2_L_0
L:83 [SER] 0:2275 [G] M:84 [PRO] 2:1038 [G] ❌ 1JJ2_L_0
L:92 [THR] 0:2265 [U] M:93 [LYS] 2:1028 [C] ❌ 1JJ2_L_0
L:76 [ARG] 0:2272 [G] M:75 [VAL] 2:1035 [G] ❌ 6AZ3_2:1035 no longer at interface
L:90 [ARG] 0:2266 [A] M:91 [GLY] 2:1029 [A] ❌ 6AZ3_2:1029 no longer at interface
L:16 [LYS] 0:2131 [G] M:15 [SER] 2:678 [U] ❌ 6AZ3_M:15, 6AZ3_2:678 no longer at interface
L:124 [GLY] 0:2131 [G] M:125 [SER] 2:678 [U] ❌ 6AZ3_2:678 no longer at interface
L:69 [LYS] 0:2131 [G] M:68 [ARG] 2:678 [U] ❌ 6AZ3_2:678 no longer at interface
L:125 [ARG] 0:2131 [G] M:126 [THR] 2:678 [U] ❌ 6AZ3_2:678 no longer at interface
L:125 [ARG] 0:2246 [U] M:126 [THR] 2:763 [C] ❌ 6AZ3_2:763 no longer at interface
L:125 [ARG] 0:2261 [C] M:126 [THR] 2:1024 [C] ❌ 6AZ3_2:1024 no longer at interface
L:21 [ALA] 0:2134 [G] M:20 [ARG] 2:681 [G] ❌ 1JJ2_L:21, 1JJ2_0:2134 no longer at interface
L:25 [TRP] 0:2134 [G] M:24 [ARG] 2:681 [G] ❌ 1JJ2_0:2134 no longer at interface
L:25 [TRP] 0:2258 [A] M:24 [ARG] 2:1020 [A] ❌ 1JJ2_0:2258 no longer at interface
L:68 [ARG] 0:1866 [A] M:67 [ARG] 2:414 [G] ❌ 1JJ2_0:1866 no longer at interface
L:77 [PHE] 0:1863 [G] M:76 [HIS] 2:411 [C] ❌ 1JJ2_0:1863 no longer at interface
L:83 [SER] 0:2120 [U] M:84 [PRO] 2:667 [OMU] ❌ 1JJ2_0:2120 no longer at interface
L:16 [LYS] 0:2132 [C] M:15 [SER] 2:679 [C] ❌ 6AZ3_M:15 no longer at interface
L:28 [MET] 0:2245 [C] M:27 [SER] 2:762 [U] ❌ 6AZ3_M:27 no longer at interface
L:21 [ALA] 0:2132 [C] M:20 [ARG] 2:679 [C] ❌ 1JJ2_L:21 no longer at interface
L:33 [ASN] 0:2245 [C] M:32 [HIS] 2:762 [U] ❌ 1JJ2_L:33 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal proteins S24e, L23 and L15e 0.83 2.3 0.19 0.92 0.81 0.87 0.75 0.60 0.45 0.30 0.38


Other pairs involving 1JJ2_L_0 or 6AZ3_M_2

Total number of entries: 10

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_M_2 7O7Y_BN_B5,B8 0.79 0.92 0.77 0.62 Ribosomal proteins S24e, L23 and L15e Eukaryotic large subunit ribosomal RNA compare
1JJ2_L_0 3CC2_M_0 0.97 1.0 0.17 0.72 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA compare
1JJ2_L_0 1YHQ_M_0 0.97 1.0 0.2 0.71 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA compare
1JJ2_L_0 7O7Y_BN_B5,B8 0.70 0.94 2.07 0.36 Ribosomal proteins S24e, L23 and L15e compare
1JJ2_L_0 1VQ8_M_0 0.97 1.0 0.3 0.71 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA compare
1JJ2_L_0 6AZ3_M_1,7 0.72 0.72 1.83 0.35 Ribosomal proteins S24e, L23 and L15e compare
1JJ2_L_0 6AZ3_M_2 0.60 0.83 2.3 0.19 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_M_0 6AZ3_M_2 0.63 0.83 2.27 0.19 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_M_0 6AZ3_M_2 0.63 0.83 2.28 0.19 Ribosomal proteins S24e, L23 and L15e compare
3CC2_M_0 6AZ3_M_2 0.63 0.83 2.3 0.19 Ribosomal proteins S24e, L23 and L15e compare