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All interfaces > All interologs > Interface groups > group106 > 1VQ8_M_0

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Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_M
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
M:1 [ALA] 0:243 [A] 3.06 48.27
M:1 [ALA] 0:244 [C] 2.53 0:267 [G] 48.27
M:1 [ALA] 0:376 [C] 2.98 0:274 [G] sugar:BB 48.27
M:1 [ALA] 0:377 [C] 3.83 0:273 [G] 48.27
M:2 [ARG] 0:243 [A] 4.94 82.5
M:2 [ARG] 0:376 [C] 4.48 0:274 [G] 82.5
M:2 [ARG] 0:377 [C] 3.63 0:273 [G] 82.5
M:3 [SER] 0:242 [A] 3.33 0:269 [G] 56.7
M:3 [SER] 0:243 [A] 3.1 56.7
M:5 [TYR] 0:242 [A] 3.7 0:269 [G] 57.07
M:5 [TYR] 0:243 [A] 4.81 57.07
M:5 [TYR] 0:264 [G] 2.89 0:247 [A] 57.07
M:6 [SER] 0:378 [A] 4.89 0:271 [C] 60.25
M:9 [ARG] 0:377 [C] 4.8 0:273 [G] 43.46
M:9 [ARG] 0:378 [A] 2.4 0:271 [C] 43.46
M:9 [ARG] 0:379 [G] 3.91 0:240 [C] 43.46
M:9 [ARG] 0:380 [A] 2.91 0:408 [A] 43.46
M:12 [TRP] 0:380 [A] 3.64 0:408 [A] 46.81
M:13 [GLU] 0:380 [A] 3.32 0:408 [A] base/AA stacks 54.37
M:13 [GLU] 0:381 [G] 3.61 54.37
M:13 [GLU] 0:409 [U] 3.37 54.37
M:14 [ASN] 0:381 [G] 4.27 38.7
M:14 [ASN] 0:407 [A] 3.57 0:382 [U] 38.7
M:15 [PRO] 0:381 [G] 3.42 55.08
M:16 [GLY] 0:381 [G] 4.7 8.96
M:25 [TRP] 0:2133 [U] 4.56 0:2260 [A] 58.13
M:25 [TRP] 0:2243 [C] 3.69 58.13
M:25 [TRP] 0:2244 [A] 3.49 0:2257 [G] sugar:SC 58.13
M:28 [GLN] 0:2245 [C] 4.96 0:2256 [G] 53.29
M:29 [GLN] 0:2244 [A] 3.43 0:2257 [G] 61.2
M:29 [GLN] 0:2245 [C] 3.82 0:2256 [G] 61.2
M:32 [ARG] 0:2133 [U] 4.53 0:2260 [A] 95.38
M:32 [ARG] 0:2244 [A] 2.87 0:2257 [G] 95.38
M:32 [ARG] 0:2245 [C] 2.78 0:2256 [G] 95.38
M:35 [GLY] 0:1467 [C] 3.32 0:1475 [G] 56.13
M:36 [ALA] 0:1467 [C] 2.77 0:1475 [G] 58.82
M:36 [ALA] 0:1468 [G] 3.67 0:1474 [C] 58.82
M:37 [VAL] 0:1467 [C] 4.57 0:1475 [G] 67.06
M:39 [ARG] 0:134 [U] 4.87 0:144 [A] 81.67
M:39 [ARG] 0:135 [G] 2.66 0:143 [C] 81.67
M:39 [ARG] 0:136 [C] 2.77 0:142 [G] 81.67
M:42 [ARG] 0:261 [A] 2.72 51.2
M:42 [ARG] 0:262 [A] 3.15 51.2
M:42 [ARG] 0:263 [U] 2.71 sugar:SC 51.2
M:43 [PRO] 0:263 [U] 4.92 98.9
M:45 [ARG] 0:380 [A] 3.98 0:408 [A] 86.0
M:45 [ARG] 0:381 [G] 2.74 86.0
M:46 [LEU] 0:263 [U] 3.49 65.53
M:46 [LEU] 0:264 [G] 3.19 0:247 [A] 65.53
M:47 [ASP] 0:241 [A] 4.54 0:270 [U] 71.3
M:47 [ASP] 0:380 [A] 4.98 0:408 [A] 71.3
M:48 [LYS] 0:379 [G] 3.93 0:240 [C] 84.02
M:48 [LYS] 0:380 [A] 3.16 0:408 [A] 84.02
M:48 [LYS] 0:381 [G] 3.57 84.02
M:48 [LYS] 0:430 [A] 4.27 84.02
M:48 [LYS] 0:431 [G] 2.54 0:239 [C] 84.02
M:50 [ARG] 0:241 [A] 3.43 0:270 [U] 93.68
M:50 [ARG] 0:242 [A] 3.12 0:269 [G] 93.68
M:50 [ARG] 0:264 [G] 2.99 0:247 [A] 93.68
M:50 [ARG] 0:265 [U] 2.71 0:248 [A] 93.68
M:51 [SER] 0:240 [C] 4.49 0:379 [G] 54.89
M:51 [SER] 0:241 [A] 3.44 0:270 [U] 54.89
M:51 [SER] 0:379 [G] 2.75 0:240 [C] base:BB, base:SC 54.89
M:51 [SER] 0:431 [G] 3.66 0:239 [C] 54.89
M:52 [GLN] 0:379 [G] 4.95 0:240 [C] 75.04
M:52 [GLN] 0:431 [G] 3.17 0:239 [C] sugar:BB 75.04
M:53 [GLY] 0:431 [G] 4.68 0:239 [C] 98.55
M:54 [TYR] 0:264 [G] 4.12 0:247 [A] 91.16
M:55 [LYS] 0:241 [A] 4.9 0:270 [U] 86.13
M:55 [LYS] 0:265 [U] 3.65 0:248 [A] 86.13
M:55 [LYS] 0:266 [G] 3.12 0:245 [C] 86.13
M:56 [ALA] 0:260 [C] 4.46 0:249 [G] 93.56
M:56 [ALA] 0:261 [A] 3.62 93.56
M:56 [ALA] 0:262 [A] 4.68 93.56
M:56 [ALA] 0:264 [G] 3.76 0:247 [A] 93.56
M:56 [ALA] 0:265 [U] 2.9 0:248 [A] 93.56
M:57 [LYS] 0:250 [C] 3.76 0:259 [G] 90.01
M:57 [LYS] 0:260 [C] 4.21 0:249 [G] 90.01
M:57 [LYS] 0:261 [A] 4.92 90.01
M:57 [LYS] 0:265 [U] 4.49 0:248 [A] 90.01
M:57 [LYS] 0:266 [G] 3.74 0:245 [C] 90.01
M:58 [GLN] 0:136 [C] 3.7 0:142 [G] 72.73
M:58 [GLN] 0:137 [U] 3.33 0:140 [G] 72.73
M:58 [GLN] 0:250 [C] 3.85 0:259 [G] 72.73
M:58 [GLN] 0:251 [C] 3.64 0:258 [G] sugar:SC 72.73
M:58 [GLN] 0:259 [G] 2.93 0:250 [C] base:SC 72.73
M:58 [GLN] 0:260 [C] 3.8 0:249 [G] 72.73
M:59 [GLY] 0:135 [G] 4.42 0:143 [C] 94.76
M:59 [GLY] 0:136 [C] 4.29 0:142 [G] 94.76
M:61 [ILE] 0:135 [G] 3.63 0:143 [C] 64.92
M:61 [ILE] 0:136 [C] 4.51 0:142 [G] 64.92
M:66 [SER] 0:1468 [G] 4.55 0:1474 [C] 83.89
M:67 [VAL] 0:1469 [C] 4.85 0:1472 [C] 84.35
M:68 [ARG] 0:1468 [G] 4.91 0:1474 [C] 45.2
M:68 [ARG] 0:1469 [C] 2.91 0:1472 [C] 45.2
M:68 [ARG] 0:1470 [A] 2.64 45.2
M:69 [LYS] 0:403 [C] 3.72 0:386 [G] 80.0
M:69 [LYS] 0:404 [G] 3.54 0:385 [C] 80.0
M:69 [LYS] 0:2131 [G] 4.83 0:2262 [C] 80.0
M:69 [LYS] 0:2263 [G] 3.77 0:2130 [C] 80.0
M:70 [GLY] 0:402 [U] 3.76 0:387 [G] 96.93
M:70 [GLY] 0:403 [C] 3.23 0:386 [G] 96.93
M:70 [GLY] 0:2263 [G] 3.4 0:2130 [C] 96.93
M:70 [GLY] 0:2264 [A] 4.38 0:2129 [U] 96.93
M:71 [SER] 0:402 [U] 4.27 0:387 [G] 57.37
M:71 [SER] 0:2263 [G] 3.89 0:2130 [C] 57.37
M:71 [SER] 0:2264 [A] 2.63 0:2129 [U] 57.37
M:72 [ALA] 0:1470 [A] 4.14 68.48
M:73 [ARG] 0:1469 [C] 3.83 0:1472 [C] 43.62
M:73 [ARG] 0:1470 [A] 3.19 43.62
M:73 [ARG] 0:1864 [C] 3.16 43.62
M:73 [ARG] 0:1865 [A] 4.31 43.62
M:73 [ARG] 0:2263 [G] 3.97 0:2130 [C] 43.62
M:73 [ARG] 0:2264 [A] 4.93 0:2129 [U] 43.62
M:74 [LYS] 0:159 [G] 3.91 0:177 [A] 76.44
M:74 [LYS] 0:1470 [A] 4.99 76.44
M:74 [LYS] 0:1864 [C] 3.43 76.44
M:75 [ARG] 0:1863 [G] 3.57 0:1866 [A] 41.21
M:75 [ARG] 0:1864 [C] 2.82 base/AA stacks 41.21
M:76 [ARG] 0:1864 [C] 4.95 54.53
M:76 [ARG] 0:2121 [G] 3.93 0:2273 [C] 54.53
M:76 [ARG] 0:2122 [C] 2.94 0:2272 [G] base:SC 54.53
M:76 [ARG] 0:2123 [A] 3.48 0:2270 [G] sugar:SC 54.53
M:76 [ARG] 0:2272 [G] 3.79 0:2122 [C] 54.53
M:76 [ARG] 0:2273 [C] 3.04 0:2121 [G] base:SC, sugar:SC 54.53
M:76 [ARG] 0:2274 [A] 4.5 0:2120 [U] 54.53
M:77 [HIS] 0:2122 [C] 4.8 0:2272 [G] 50.04
M:77 [HIS] 0:2273 [C] 4.73 0:2121 [G] 50.04
M:77 [HIS] 0:2274 [A] 3.51 0:2120 [U] sugar:SC 50.04
M:78 [LYS] 0:868 [G] 4.95 0:884 [C] 8.56
M:78 [LYS] 0:869 [G] 3.58 8.56
M:78 [LYS] 0:870 [G] 3.56 0:880 [C] 8.56
M:79 [ALA] 0:770 [C] 3.45 0:891 [G] 45.04
M:79 [ALA] 0:771 [G] 3.5 0:890 [C] 45.04
M:79 [ALA] 0:2274 [A] 4.6 0:2120 [U] 45.04
M:80 [GLY] 0:160 [A] 4.55 0:176 [U] 86.16
M:80 [GLY] 0:161 [A] 3.58 0:174 [A] 86.16
M:80 [GLY] 0:769 [C] 4.7 0:892 [G] 86.16
M:80 [GLY] 0:770 [C] 2.84 0:891 [G] 86.16
M:80 [GLY] 0:2274 [A] 3.41 0:2120 [U] 86.16
M:80 [GLY] 0:2275 [G] 3.48 0:2119 [C] 86.16
M:81 [ARG] 0:160 [A] 3.32 0:176 [U] 93.63
M:81 [ARG] 0:161 [A] 3.56 0:174 [A] 93.63
M:81 [ARG] 0:770 [C] 3.13 0:891 [G] 93.63
M:81 [ARG] 0:771 [G] 2.93 0:890 [C] 93.63
M:81 [ARG] 0:2274 [A] 2.95 0:2120 [U] sugar:BB 93.63
M:81 [ARG] 0:2275 [G] 3.07 0:2119 [C] 93.63
M:82 [ARG] 0:161 [A] 3.5 0:174 [A] 86.08
M:82 [ARG] 0:169 [A] 4.47 86.08
M:82 [ARG] 0:170 [U] 3.03 0:221 [G] 86.08
M:82 [ARG] 0:171 [C] 3.03 0:164 [G] 86.08
M:82 [ARG] 0:172 [U] 2.86 0:163 [U] base:SC 86.08
M:82 [ARG] 0:173 [C] 3.51 0:162 [C] 86.08
M:82 [ARG] 0:2275 [G] 4.16 0:2119 [C] 86.08
M:83 [SER] 0:169 [A] 3.73 73.94
M:83 [SER] 0:170 [U] 2.57 0:221 [G] 73.94
M:83 [SER] 0:2121 [G] 3.36 0:2273 [C] 73.94
M:83 [SER] 0:2122 [C] 4.7 0:2272 [G] 73.94
M:84 [LYS] 0:170 [U] 3.06 0:221 [G] 63.31
M:84 [LYS] 0:171 [C] 3.16 0:164 [G] 63.31
M:84 [LYS] 0:390 [G] 3.49 0:399 [C] 63.31
M:84 [LYS] 0:391 [U] 2.35 0:398 [U] 63.31
M:85 [ARG] 0:160 [A] 3.41 0:176 [U] 64.36
M:85 [ARG] 0:161 [A] 3.88 0:174 [A] 64.36
M:85 [ARG] 0:174 [A] 4.17 0:161 [A] 64.36
M:85 [ARG] 0:175 [G] 4.81 64.36
M:85 [ARG] 0:390 [G] 4.0 0:399 [C] 64.36
M:85 [ARG] 0:391 [U] 2.59 0:398 [U] 64.36
M:86 [GLN] 0:2121 [G] 3.04 0:2273 [C] base:SC 50.88
M:86 [GLN] 0:2122 [C] 3.3 0:2272 [G] 50.88
M:86 [GLN] 0:2123 [A] 5.0 0:2270 [G] 50.88
M:86 [GLN] 0:2273 [C] 4.67 0:2121 [G] 50.88
M:86 [GLN] 0:2274 [A] 3.22 0:2120 [U] base:SC 50.88
M:86 [GLN] 0:2275 [G] 4.26 0:2119 [C] 50.88
M:87 [GLY] 0:2122 [C] 3.91 0:2272 [G] 74.9
M:87 [GLY] 0:2123 [A] 4.34 0:2270 [G] 74.9
M:88 [VAL] 0:2122 [C] 3.94 0:2272 [G] 59.98
M:88 [VAL] 0:2123 [A] 3.36 0:2270 [G] 59.98
M:89 [THR] 0:2122 [C] 4.9 0:2272 [G] 29.41
M:89 [THR] 0:2123 [A] 2.86 0:2270 [G] 29.41
M:89 [THR] 0:2124 [G] 3.77 0:2269 [C] 29.41
M:89 [THR] 0:2264 [A] 4.69 0:2129 [U] 29.41
M:89 [THR] 0:2265 [U] 4.71 0:2128 [G] 29.41
M:90 [ARG] 0:388 [G] 2.8 0:401 [C] 41.95
M:90 [ARG] 0:389 [G] 2.78 0:400 [C] 41.95
M:90 [ARG] 0:2123 [A] 4.55 0:2270 [G] 41.95
M:90 [ARG] 0:2265 [U] 4.12 0:2128 [G] 41.95
M:90 [ARG] 0:2266 [A] 2.67 0:2127 [U] 41.95
M:91 [ILE] 0:159 [G] 4.72 0:177 [A] 40.07
M:91 [ILE] 0:389 [G] 3.83 0:400 [C] 40.07
M:92 [THR] 0:388 [G] 3.62 0:401 [C] 80.33
M:92 [THR] 0:389 [G] 4.07 0:400 [C] 80.33
M:92 [THR] 0:401 [C] 2.7 0:388 [G] base:SC 80.33
M:92 [THR] 0:402 [U] 3.53 0:387 [G] 80.33
M:93 [ARG] 0:158 [A] 3.12 0:178 [U] 37.23
M:93 [ARG] 0:159 [G] 3.52 0:177 [A] 37.23
M:93 [ARG] 0:401 [C] 2.96 0:388 [G] sugar:BB 37.23
M:93 [ARG] 0:1469 [C] 4.41 0:1472 [C] 37.23
M:93 [ARG] 0:1470 [A] 2.7 37.23
M:94 [ARG] 0:157 [G] 4.38 0:179 [C] 2.1
M:94 [ARG] 0:158 [A] 2.85 0:178 [U] 2.1
M:94 [ARG] 0:175 [G] 2.63 base:SC, base:SC 2.1
M:94 [ARG] 0:390 [G] 4.2 0:399 [C] 2.1
M:94 [ARG] 0:391 [U] 4.36 0:398 [U] 2.1
M:94 [ARG] 0:400 [C] 3.42 0:389 [G] sugar:BB 2.1
M:94 [ARG] 0:401 [C] 3.66 0:388 [G] 2.1
M:95 [LYS] 0:156 [C] 4.24 0:180 [G] 64.04
M:95 [LYS] 0:157 [G] 3.55 0:179 [C] sugar:SC 64.04
M:95 [LYS] 0:158 [A] 4.5 0:178 [U] 64.04
M:95 [LYS] 0:401 [C] 3.95 0:388 [G] 64.04
M:95 [LYS] 0:402 [U] 4.68 0:387 [G] 64.04
M:95 [LYS] 0:1470 [A] 3.07 sugar:SC 64.04
M:96 [ASP] 0:401 [C] 3.45 0:388 [G] 86.67
M:96 [ASP] 0:402 [U] 3.46 0:387 [G] 86.67
M:97 [ILE] 0:401 [C] 4.48 0:388 [G] 43.56
M:97 [ILE] 0:402 [U] 2.96 0:387 [G] 43.56
M:97 [ILE] 0:403 [C] 4.69 0:386 [G] 43.56
M:99 [ARG] 0:156 [C] 3.06 0:180 [G] sugar:SC 0.02
M:99 [ARG] 0:157 [G] 2.68 0:179 [C] 0.02
M:100 [VAL] 0:1470 [A] 3.62 80.87
M:100 [VAL] 0:1471 [A] 3.47 80.87
M:103 [GLU] 0:156 [C] 4.7 0:180 [G] 60.17
M:103 [GLU] 0:1470 [A] 4.55 60.17
M:103 [GLU] 0:1471 [A] 4.51 60.17
M:104 [ARG] 0:1468 [G] 4.3 0:1474 [C] 91.01
M:104 [ARG] 0:1469 [C] 2.99 0:1472 [C] base/AA stacks 91.01
M:104 [ARG] 0:1470 [A] 4.52 91.01
M:104 [ARG] 0:1471 [A] 2.82 91.01
M:107 [ARG] 0:133 [U] 4.43 0:145 [A] 70.24
M:107 [ARG] 0:181 [G] 3.65 0:155 [C] sugar:SC 70.24
M:107 [ARG] 0:1471 [A] 3.14 70.24
M:107 [ARG] 0:1472 [C] 2.92 0:1469 [C] 70.24
M:108 [THR] 0:133 [U] 2.6 0:145 [A] sugar:BB 60.79
M:108 [THR] 0:134 [U] 3.78 0:144 [A] 60.79
M:109 [PHE] 0:133 [U] 4.77 0:145 [A] 55.96
M:109 [PHE] 0:134 [U] 3.36 0:144 [A] 55.96
M:109 [PHE] 0:135 [G] 3.84 0:143 [C] 55.96
M:110 [PRO] 0:133 [U] 3.05 0:145 [A] 54.3
M:110 [PRO] 0:134 [U] 4.1 0:144 [A] 54.3
M:110 [PRO] 0:145 [A] 4.67 0:133 [U] 54.3
M:110 [PRO] 0:146 [U] 3.85 0:132 [A] 54.3
M:111 [ASN] 0:134 [U] 2.47 0:144 [A] sugar:SC 96.43
M:111 [ASN] 0:135 [G] 3.31 0:143 [C] sugar:SC 96.43
M:111 [ASN] 0:144 [A] 4.88 0:134 [U] 96.43
M:111 [ASN] 0:145 [A] 3.39 0:133 [U] 96.43
M:111 [ASN] 0:146 [U] 4.6 0:132 [A] 96.43
M:112 [LEU] 0:134 [U] 4.09 0:144 [A] 63.14
M:112 [LEU] 0:135 [G] 4.02 0:143 [C] 63.14
M:115 [LEU] 0:432 [G] 4.96 0:238 [C] 85.53
M:116 [ASN] 0:431 [G] 3.22 0:239 [C] sugar:SC 83.92
M:116 [ASN] 0:432 [G] 3.65 0:238 [C] 83.92
M:119 [SER] 0:381 [G] 4.5 0.0
M:122 [GLN] 0:404 [G] 3.59 0:385 [C] 62.18
M:123 [ASP] 0:2132 [C] 4.01 0:2261 [C] 98.8
M:124 [GLY] 0:2131 [G] 3.11 0:2262 [C] base:BB 88.99
M:124 [GLY] 0:2132 [C] 2.93 0:2261 [C] sugar:BB 88.99
M:124 [GLY] 0:2262 [C] 3.84 0:2131 [G] 88.99
M:124 [GLY] 0:2263 [G] 4.3 0:2130 [C] 88.99
M:125 [ARG] 0:2131 [G] 4.99 0:2262 [C] 38.04
M:125 [ARG] 0:2132 [C] 4.97 0:2261 [C] 38.04
M:125 [ARG] 0:2246 [U] 4.9 0:2255 [A] 38.04
M:125 [ARG] 0:2262 [C] 4.03 0:2131 [G] 38.04
M:127 [LYS] 0:402 [U] 4.77 0:387 [G] 56.77
M:127 [LYS] 0:403 [C] 2.68 0:386 [G] 56.77
M:135 [ASP] 0:135 [G] 2.61 0:143 [C] sugar:SC 91.19
M:135 [ASP] 0:136 [C] 4.92 0:142 [G] 91.19
M:137 [ASN] 0:144 [A] 3.99 0:134 [U] 19.7
M:137 [ASN] 0:145 [A] 3.36 0:133 [U] sugar:SC 19.7
M:138 [HIS] 0:135 [G] 4.7 0:143 [C] 70.57
M:138 [HIS] 0:136 [C] 3.19 0:142 [G] sugar:SC 70.57
M:138 [HIS] 0:251 [C] 3.67 0:258 [G] 70.57
M:139 [PRO] 0:251 [C] 3.41 0:258 [G] 75.16
M:139 [PRO] 0:252 [C] 3.72 0:257 [G] 75.16
M:140 [ALA] 0:250 [C] 4.28 0:259 [G] 45.22
M:140 [ALA] 0:251 [C] 3.64 0:258 [G] 45.22
M:143 [ASN] 0:250 [C] 4.78 0:259 [G] 53.35
M:143 [ASN] 0:251 [C] 3.09 0:258 [G] 53.35
M:144 [ASP] 0:266 [G] 3.82 0:245 [C] 83.81
M:145 [ASP] 0:239 [C] 4.37 0:431 [G] 34.9
M:146 [ASP] 0:239 [C] 3.85 0:431 [G] sugar:SC 34.82
M:146 [ASP] 0:240 [C] 3.34 0:379 [G] 34.82
M:146 [ASP] 0:266 [G] 4.87 0:245 [C] 34.82
M:149 [TRP] 0:432 [G] 3.57 0:238 [C] 33.85
M:149 [TRP] 0:433 [C] 3.35 0:237 [G] 33.85
M:153 [ASP] 0:183 [A] 3.8 10.03
M:153 [ASP] 0:184 [G] 4.07 0:153 [C] 10.03
M:153 [ASP] 0:185 [G] 4.7 0:152 [A] 10.03
M:154 [ASP] 0:183 [A] 3.72 2.85
M:154 [ASP] 0:184 [G] 4.3 0:153 [C] 2.85
M:154 [ASP] 0:187 [A] 4.52 2.85
M:154 [ASP] 0:188 [C] 3.84 2.85
M:154 [ASP] 0:434 [U] 4.21 0:191 [A] 2.85
M:155 [GLN] 0:433 [C] 4.17 0:237 [G] 61.07
M:155 [GLN] 0:434 [U] 3.46 0:191 [A] 61.07
M:156 [ALA] 0:182 [G] 4.14 0:154 [C] 65.28
M:156 [ALA] 0:183 [A] 3.61 65.28
M:157 [ASP] 0:147 [G] 4.99 0:131 [A] 70.38
M:157 [ASP] 0:182 [G] 3.12 0:154 [C] 70.38
M:157 [ASP] 0:183 [A] 3.46 70.38
M:158 [ARG] 0:432 [G] 4.36 0:238 [C] 98.4
M:158 [ARG] 0:433 [C] 2.96 0:237 [G] 98.4
M:160 [PHE] 0:155 [C] 4.6 0:181 [G] 11.43
M:160 [PHE] 0:156 [C] 3.64 0:180 [G] 11.43
M:160 [PHE] 0:181 [G] 3.11 0:155 [C] base:BB 11.43
M:160 [PHE] 0:182 [G] 3.92 0:154 [C] 11.43
M:161 [ARG] 0:155 [C] 2.65 0:181 [G] sugar:BB 96.5
M:161 [ARG] 0:156 [C] 3.34 0:180 [G] 96.5
M:161 [ARG] 0:181 [G] 4.13 0:155 [C] 96.5
M:161 [ARG] 0:182 [G] 3.59 0:154 [C] sugar:SC 96.5
M:161 [ARG] 0:183 [A] 3.33 base/AA stacks 96.5
M:161 [ARG] 0:187 [A] 3.69 96.5
M:161 [ARG] 0:188 [C] 2.94 96.5
M:162 [GLY] 0:155 [C] 4.82 0:181 [G] 82.82
M:162 [GLY] 0:156 [C] 3.92 0:180 [G] 82.82
M:162 [GLY] 0:189 [A] 4.86 82.82
M:163 [LEU] 0:155 [C] 4.58 0:181 [G] 66.95
M:163 [LEU] 0:188 [C] 3.47 66.95
M:163 [LEU] 0:189 [A] 4.04 66.95
M:163 [LEU] 0:433 [C] 4.27 0:237 [G] 66.95
M:164 [THR] 0:432 [G] 4.44 0:238 [C] 90.94
M:165 [GLY] 0:431 [G] 4.91 0:239 [C] 75.93
M:165 [GLY] 0:432 [G] 2.93 0:238 [C] 75.93
M:168 [ARG] 0:189 [A] 2.83 70.74
M:168 [ARG] 0:190 [G] 4.47 0:435 [A] 70.74
M:168 [ARG] 0:432 [G] 4.29 0:238 [C] 70.74
M:168 [ARG] 0:433 [C] 2.91 0:237 [G] 70.74
M:169 [ARG] 0:400 [C] 3.79 0:389 [G] 69.34
M:169 [ARG] 0:430 [A] 4.91 69.34
M:169 [ARG] 0:431 [G] 4.45 0:239 [C] 69.34
M:170 [ASN] 0:157 [G] 3.55 0:179 [C] 58.75
M:170 [ASN] 0:400 [C] 2.79 0:389 [G] 58.75
M:170 [ASN] 0:401 [C] 3.04 0:388 [G] 58.75
M:171 [ARG] 0:155 [C] 3.34 0:181 [G] 89.09
M:171 [ARG] 0:156 [C] 2.7 0:180 [G] 89.09
M:171 [ARG] 0:157 [G] 4.03 0:179 [C] 89.09
M:171 [ARG] 0:188 [C] 3.39 sugar:SC 89.09
M:171 [ARG] 0:189 [A] 2.54 89.09
M:171 [ARG] 0:399 [C] 4.83 0:390 [G] 89.09
M:171 [ARG] 0:400 [C] 4.77 0:389 [G] 89.09
M:172 [GLY] 0:399 [C] 3.55 0:390 [G] 70.16
M:172 [GLY] 0:400 [C] 3.88 0:389 [G] 70.16
M:173 [LEU] 0:189 [A] 3.94 61.57
M:173 [LEU] 0:190 [G] 3.52 0:435 [A] 61.57
M:174 [SER] 0:193 [A] 3.86 36.25
M:174 [SER] 0:400 [C] 4.8 0:389 [G] 36.25
M:176 [LYS] 0:190 [G] 3.64 0:435 [A] 71.85
M:176 [LYS] 0:191 [A] 3.4 0:434 [U] 71.85
M:176 [LYS] 0:192 [A] 3.28 0:203 [G] base:SC 71.85
M:176 [LYS] 0:193 [A] 3.56 71.85
M:176 [LYS] 0:194 [A] 3.72 0:202 [U] 71.85
M:176 [LYS] 0:204 [A] 2.68 0:436 [A] sugar:SC 71.85
M:176 [LYS] 0:205 [U] 4.27 0:437 [A] 71.85
M:177 [GLY] 0:194 [A] 3.4 0:202 [U] 69.31
M:177 [GLY] 0:195 [C] 3.7 0:201 [G] 69.31
M:178 [LYS] 0:194 [A] 4.19 0:202 [U] 43.84
M:178 [LYS] 0:195 [C] 2.85 0:201 [G] 43.84
M:178 [LYS] 0:394 [G] 3.59 43.84
M:178 [LYS] 0:397 [A] 4.75 43.84
M:178 [LYS] 0:398 [U] 4.68 0:391 [U] 43.84
M:178 [LYS] 0:399 [C] 3.96 0:390 [G] 43.84
M:178 [LYS] 0:415 [A] 4.73 0:425 [U] 43.84
M:178 [LYS] 0:416 [G] 2.62 0:424 [C] 43.84
M:178 [LYS] 0:417 [G] 3.15 sugar:SC 43.84
M:179 [GLY] 0:394 [G] 3.7 69.64
M:179 [GLY] 0:398 [U] 3.06 0:391 [U] sugar:BB 69.64
M:179 [GLY] 0:399 [C] 3.03 0:390 [G] 69.64
M:180 [SER] 0:398 [U] 4.8 0:391 [U] 54.59
M:180 [SER] 0:399 [C] 4.85 0:390 [G] 54.59
M:181 [GLU] 0:226 [A] 4.07 0:214 [U] 66.92
M:181 [GLU] 0:227 [A] 3.54 0:212 [A] 66.92
M:181 [GLU] 0:393 [G] 3.33 66.92
M:181 [GLU] 0:394 [G] 2.71 base:SC, base:SC 66.92
M:181 [GLU] 0:398 [U] 4.17 0:391 [U] 66.92
M:181 [GLU] 0:417 [G] 4.78 66.92
M:182 [LYS] 0:226 [A] 3.44 0:214 [U] sugar:SC 77.52
M:182 [LYS] 0:392 [U] 3.15 77.52
M:182 [LYS] 0:393 [G] 3.17 base:SC 77.52
M:182 [LYS] 0:394 [G] 3.49 77.52
M:183 [THR] 0:399 [C] 3.87 0:390 [G] 1.32
M:184 [ARG] 0:189 [A] 3.03 77.2
M:184 [ARG] 0:190 [G] 3.22 0:435 [A] 77.2
M:184 [ARG] 0:205 [U] 3.51 0:437 [A] 77.2
M:184 [ARG] 0:206 [G] 3.37 0:233 [U] 77.2
M:185 [PRO] 0:188 [C] 2.6 sugar:BB 71.43
M:185 [PRO] 0:189 [A] 3.13 71.43
M:185 [PRO] 0:206 [G] 3.89 0:233 [U] 71.43
M:185 [PRO] 0:207 [U] 3.9 0:232 [A] 71.43
M:186 [SER] 0:155 [C] 2.59 0:181 [G] 86.72
M:186 [SER] 0:156 [C] 3.75 0:180 [G] 86.72
M:186 [SER] 0:188 [C] 3.46 86.72
M:187 [LEU] 0:155 [C] 4.73 0:181 [G] 47.36
M:187 [LEU] 0:156 [C] 3.11 0:180 [G] 47.36
M:187 [LEU] 0:157 [G] 3.36 0:179 [C] 47.36
M:188 [ARG] 0:154 [C] 2.95 0:182 [G] 63.74
M:188 [ARG] 0:155 [C] 2.39 0:181 [G] 63.74
M:188 [ARG] 0:156 [C] 3.04 0:180 [G] 63.74
M:189 [SER] 0:155 [C] 3.43 0:181 [G] 77.98
M:189 [SER] 0:207 [U] 4.71 0:232 [A] 77.98
M:191 [GLY] 0:175 [G] 2.96 0.07
M:191 [GLY] 0:176 [U] 4.15 0:160 [A] 0.07
M:192 [GLY] 0:175 [G] 3.31 47.3
M:193 [LYS] 0:175 [G] 3.97 27.68
M:193 [LYS] 0:225 [G] 3.89 0:215 [A] 27.68
M:193 [LYS] 0:391 [U] 3.25 0:398 [U] 27.68
M:193 [LYS] 0:392 [U] 3.19 27.68
M:193 [LYS] 0:393 [G] 3.35 27.68
M:194 [ALA] 0:390 [G] 4.87 0:399 [C] 71.53
M:194 [ALA] 0:391 [U] 4.21 0:398 [U] 71.53
M:194 [ALA] 0:399 [C] 2.55 0:390 [G] sugar:SC 71.53
M:194 [ALA] 0:400 [C] 4.73 0:389 [G] 71.53

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group106 1VQ8_M_0 M: 50s ribosomal protein l15e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P60618 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_L_0 1VQ8_M_0 0.97 1.0 0.3 0.71 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA compare
1VQ8_M_0 6AZ3_M_2 0.63 0.83 2.27 0.19 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_M_0 1YHQ_M_0 0.99 1.0 0.22 0.98 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA compare
1VQ8_M_0 7O7Y_BN_B5,B8 0.72 0.94 2.04 0.36 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_M_0 6AZ3_M_1,7 0.76 0.72 1.72 0.32 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_M_0 3CC2_M_0 0.99 1.0 0.27 0.98 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA compare