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All interfaces > All interologs > Interface groups > group106 > 6AZ3_M_2

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

6AZ3_M
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
M:20 [ARG] 2:679 [C] 4.12 2:1024 [C] 3.46
M:20 [ARG] 2:681 [G] 3.7 2:758 [C] 3.46
M:24 [ARG] 2:680 [U] 3.9 2:1022 [A] 57.92
M:24 [ARG] 2:681 [G] 4.27 2:758 [C] 57.92
M:24 [ARG] 2:760 [U] 4.41 57.92
M:24 [ARG] 2:761 [A] 4.39 2:1019 [G] 57.92
M:24 [ARG] 2:1020 [A] 4.41 2:759 [U] 57.92
M:28 [TRP] 2:761 [A] 3.61 2:1019 [G] 30.34
M:28 [TRP] 2:762 [U] 4.08 2:1018 [A] 30.34
M:31 [ARG] 2:680 [U] 4.75 2:1022 [A] 93.88
M:31 [ARG] 2:761 [A] 3.22 2:1019 [G] 93.88
M:31 [ARG] 2:762 [U] 2.79 2:1018 [A] 93.88
M:32 [HIS] 2:762 [U] 3.44 2:1018 [A] 52.33
M:67 [ARG] 2:414 [G] 3.3 54.73
M:67 [ARG] 2:415 [U] 3.48 54.73
M:68 [ARG] 2:1026 [G] 4.09 2:677 [C] 72.35
M:69 [GLY] 2:1026 [G] 3.24 2:677 [C] 95.91
M:69 [GLY] 2:1027 [C] 3.46 2:676 [G] 95.91
M:70 [GLY] 2:1026 [G] 4.29 2:677 [C] 47.04
M:70 [GLY] 2:1027 [C] 3.13 2:676 [G] 47.04
M:72 [LYS] 2:412 [A] 3.55 45.26
M:72 [LYS] 2:413 [A] 3.33 45.26
M:72 [LYS] 2:670 [A] 4.11 2:1033 [G] 45.26
M:72 [LYS] 2:671 [G] 3.59 2:1032 [U] 45.26
M:73 [ARG] 2:412 [A] 4.69 69.32
M:74 [PRO] 2:412 [A] 3.49 39.2
M:75 [VAL] 2:412 [A] 3.79 56.49
M:76 [HIS] 2:411 [C] 3.03 58.7
M:76 [HIS] 2:412 [A] 3.09 58.7
M:77 [LYS] 2:411 [C] 3.41 23.12
M:77 [LYS] 2:412 [A] 3.06 23.12
M:77 [LYS] 2:670 [A] 3.38 2:1033 [G] 23.12
M:78 [GLY] 2:669 [C] 3.65 2:1035 [G] sugar:BB 39.6
M:78 [GLY] 2:670 [A] 3.88 2:1033 [G] 39.6
M:79 [ILE] 2:1036 [G] 3.29 2:668 [C] 40.77
M:79 [ILE] 2:1037 [A] 4.02 2:667 [OMU] 40.77
M:80 [THR] 2:1037 [A] 3.1 2:667 [OMU] sugar:BB 67.75
M:81 [TYR] 2:1037 [A] 3.8 2:667 [OMU] 49.27
M:81 [TYR] 2:1038 [G] 4.45 2:666 [C] 49.27
M:82 [GLY] 2:1037 [A] 4.12 2:667 [OMU] 82.49
M:82 [GLY] 2:1038 [G] 3.24 2:666 [C] sugar:BB 82.49
M:83 [LYS] 2:1038 [G] 4.9 2:666 [C] 80.71
M:84 [PRO] 2:667 [OMU] 3.88 2:1037 [A] 69.6
M:84 [PRO] 2:668 [C] 4.47 2:1036 [G] 69.6
M:84 [PRO] 2:1038 [G] 4.17 2:666 [C] 69.6
M:87 [SER] 2:668 [C] 3.55 2:1036 [G] sugar:SC 38.61
M:87 [SER] 2:669 [C] 3.69 2:1035 [G] sugar:BB 38.61
M:88 [GLY] 2:669 [C] 4.16 2:1035 [G] 67.23
M:88 [GLY] 2:670 [A] 4.3 2:1033 [G] 67.23
M:89 [VAL] 2:669 [C] 3.96 2:1035 [G] 50.58
M:89 [VAL] 2:670 [A] 3.17 2:1033 [G] 50.58
M:90 [LEU] 2:670 [A] 3.01 2:1033 [G] 14.28
M:90 [LEU] 2:671 [G] 3.63 2:1032 [U] 14.28
M:91 [GLY] 2:670 [A] 4.69 2:1033 [G] 26.85
M:93 [LYS] 2:1028 [C] 2.99 2:675 [G] 69.16
M:124 [ASP] 2:679 [C] 4.63 2:1024 [C] 97.96
M:125 [SER] 2:679 [C] 3.1 2:1024 [C] sugar:SC 83.04
M:125 [SER] 2:1025 [U] 3.17 2:678 [U] base:SC 83.04
M:125 [SER] 2:1026 [G] 3.46 2:677 [C] 83.04
M:126 [THR] 2:1025 [U] 3.01 2:678 [U] sugar:SC 45.21

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group106 6AZ3_M_2 M: Ribosomal protein l15, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) E9BMB4 Ribosomal proteins S24e, L23 and L15e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_M_2 7O7Y_BN_B5,B8 0.79 0.92 0.77 0.62 Ribosomal proteins S24e, L23 and L15e Eukaryotic large subunit ribosomal RNA compare
1JJ2_L_0 6AZ3_M_2 0.60 0.83 2.3 0.19 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_M_0 6AZ3_M_2 0.63 0.83 2.27 0.19 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_M_0 6AZ3_M_2 0.63 0.83 2.28 0.19 Ribosomal proteins S24e, L23 and L15e compare
3CC2_M_0 6AZ3_M_2 0.63 0.83 2.3 0.19 Ribosomal proteins S24e, L23 and L15e compare