RNAprotDB

All interfaces > All interologs > Interface groups > group107 > 1K8W_A_B

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

1K8W_A
1K8W_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:24 [SER] B:412 [G] 4.46 90.99
A:24 [SER] B:413 [A] 2.81 B:409 [U] 90.99
A:25 [SER] B:412 [G] 4.79 98.79
A:26 [ASN] B:413 [A] 3.22 B:409 [U] 65.1
A:26 [ASN] B:415 [C] 3.28 65.1
A:27 [ASP] B:413 [A] 3.53 B:409 [U] 65.71
A:29 [LEU] B:413 [A] 3.35 B:409 [U] 84.21
A:29 [LEU] B:415 [C] 4.85 84.21
A:30 [GLN] B:415 [C] 3.63 55.5
A:40 [ARG] B:416 [C] 4.07 B:408 [G] 88.7
A:40 [ARG] B:417 [C] 4.41 B:407 [G] 88.7
A:41 [ALA] B:413 [A] 4.86 B:409 [U] 81.35
A:41 [ALA] B:415 [C] 4.41 81.35
A:41 [ALA] B:416 [C] 3.34 B:408 [G] 81.35
A:42 [GLY] B:413 [A] 3.88 B:409 [U] 98.65
A:42 [GLY] B:416 [C] 3.22 B:408 [G] 98.65
A:43 [HIS] B:409 [U] 3.53 B:413 [A] 95.82
A:43 [HIS] B:413 [A] 2.98 B:409 [U] base:BB, base:BB base/AA stacks 95.82
A:43 [HIS] B:416 [C] 4.54 B:408 [G] 95.82
A:44 [THR] B:409 [U] 4.25 B:413 [A] 72.18
A:44 [THR] B:410 [FHU] 4.14 72.18
A:44 [THR] B:413 [A] 4.84 B:409 [U] 72.18
A:45 [GLY] B:409 [U] 3.22 B:413 [A] 98.87
A:45 [GLY] B:410 [FHU] 3.38 98.87
A:45 [GLY] B:413 [A] 4.71 B:409 [U] 98.87
A:46 [ALA] B:409 [U] 3.11 B:413 [A] sugar:BB 96.49
A:46 [ALA] B:410 [FHU] 3.14 96.49
A:46 [ALA] B:411 [C] 3.64 96.49
A:46 [ALA] B:412 [G] 4.62 96.49
A:47 [LEU] B:410 [FHU] 3.26 98.31
A:48 [ASP] B:410 [FHU] 2.49 base:SC, base:BB, sugar:SC 99.0
A:48 [ASP] B:411 [C] 3.22 99.0
A:49 [PRO] B:411 [C] 3.75 96.01
A:49 [PRO] B:412 [G] 3.28 96.01
A:51 [ALA] B:410 [FHU] 4.42 98.95
A:63 [THR] B:416 [C] 3.55 B:408 [G] 95.77
A:63 [THR] B:417 [C] 2.9 B:407 [G] 95.77
A:64 [LYS] B:417 [C] 4.38 B:407 [G] 85.98
A:64 [LYS] B:418 [G] 4.65 B:406 [C] 85.98
A:66 [SER] B:416 [C] 3.69 B:408 [G] 52.45
A:66 [SER] B:417 [C] 2.89 B:407 [G] sugar:SC 52.45
A:67 [GLN] B:408 [G] 4.31 B:416 [C] 48.68
A:67 [GLN] B:417 [C] 2.57 B:407 [G] sugar:SC 48.68
A:67 [GLN] B:418 [G] 3.62 B:406 [C] 48.68
A:70 [LEU] B:408 [G] 3.72 B:416 [C] 48.69
A:70 [LEU] B:409 [U] 3.3 B:413 [A] 48.69
A:70 [LEU] B:410 [FHU] 3.68 48.69
A:70 [LEU] B:413 [A] 4.57 B:409 [U] 48.69
A:70 [LEU] B:416 [C] 4.85 B:408 [G] 48.69
A:70 [LEU] B:417 [C] 4.11 B:407 [G] 48.69
A:71 [ASP] B:408 [G] 4.71 B:416 [C] 43.82
A:72 [SER] B:410 [FHU] 4.74 1.81
A:74 [LYS] B:409 [U] 4.38 B:413 [A] 98.76
A:74 [LYS] B:410 [FHU] 2.75 98.76
A:76 [TYR] B:410 [FHU] 2.89 97.96
A:88 [THR] B:411 [C] 3.26 95.0
A:90 [ASP] B:411 [C] 3.04 base:SC, base:SC 98.97
A:92 [ASP] B:411 [C] 4.11 62.26
A:93 [GLY] B:411 [C] 4.94 96.65
A:126 [TYR] B:411 [C] 3.45 72.19
A:127 [SER] B:411 [C] 3.46 99.0
A:128 [ALA] B:408 [G] 4.65 B:416 [C] 98.68
A:128 [ALA] B:409 [U] 3.76 B:413 [A] 98.68
A:128 [ALA] B:411 [C] 2.64 98.68
A:128 [ALA] B:412 [G] 4.28 98.68
A:129 [LEU] B:408 [G] 3.53 B:416 [C] 59.76
A:129 [LEU] B:409 [U] 3.12 B:413 [A] 59.76
A:129 [LEU] B:411 [C] 4.24 59.76
A:130 [LYS] B:407 [G] 3.55 B:417 [C] 92.7
A:130 [LYS] B:408 [G] 2.55 B:416 [C] base:SC, base:SC 92.7
A:130 [LYS] B:409 [U] 2.46 B:413 [A] base:SC 92.7
A:131 [TYR] B:407 [G] 3.67 B:417 [C] 75.39
A:132 [GLN] B:406 [C] 3.5 B:418 [G] 69.17
A:132 [GLN] B:407 [G] 2.89 B:417 [C] 69.17
A:133 [GLY] B:406 [C] 3.44 B:418 [G] 98.73
A:133 [GLY] B:407 [G] 2.63 B:417 [C] 98.73
A:134 [LYS] B:407 [G] 4.59 B:417 [C] 75.17
A:135 [LYS] B:413 [A] 4.94 B:409 [U] 80.03
A:135 [LYS] B:414 [U] 2.63 80.03
A:137 [TYR] B:411 [C] 3.34 90.11
A:137 [TYR] B:412 [G] 3.18 90.11
A:137 [TYR] B:413 [A] 4.19 B:409 [U] 90.11
A:137 [TYR] B:414 [U] 4.14 90.11
A:141 [ARG] B:411 [C] 3.46 base:SC 97.29
A:141 [ARG] B:412 [G] 2.9 sugar:SC base/AA stacks 97.29
A:151 [ARG] B:408 [G] 4.26 B:416 [C] 91.31
A:151 [ARG] B:409 [U] 2.63 B:413 [A] 91.31
A:176 [LYS] B:408 [G] 3.53 B:416 [C] 73.69
A:176 [LYS] B:409 [U] 2.94 B:413 [A] 73.69
A:176 [LYS] B:410 [FHU] 3.48 73.69
A:177 [GLY] B:409 [U] 3.5 B:413 [A] 98.97
A:177 [GLY] B:410 [FHU] 2.88 98.97
A:178 [THR] B:410 [FHU] 3.46 93.9
A:179 [TYR] B:409 [U] 4.78 B:413 [A] 97.32
A:179 [TYR] B:410 [FHU] 3.17 97.32
A:179 [TYR] B:411 [C] 2.66 97.32
A:180 [ILE] B:410 [FHU] 2.74 base:BB 89.98
A:181 [ARG] B:410 [FHU] 2.59 base:BB 98.97
A:181 [ARG] B:411 [C] 3.59 base/AA stacks 98.97
A:182 [THR] B:410 [FHU] 4.77 87.9
A:200 [LEU] B:410 [FHU] 3.5 95.21
A:202 [ARG] B:410 [FHU] 2.81 98.97
A:307 [ARG] B:418 [G] 4.34 B:406 [C] 73.14

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group107 1K8W_A_B A: tRNA pseudouridine synthase b, Escherichia coli (genetically engineered) B: N/A P60340 PUA domain & Pseudouridine synthase ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1K8W_A_B 2AB4_A_B 0.90 0.91 0.79 0.54 PUA domain & Pseudouridine synthase compare
1K8W_A_B 1R3E_A_C 0.91 0.9 0.72 0.54 PUA domain & Pseudouridine synthase compare
1K8W_A_B 3HJW_A_D,E 0.82 0.76 1.31 0.15 PUA domain & Pseudouridine synthase compare
1K8W_A_B 3HAX_A_E,F 0.84 0.76 1.22 0.15 PUA domain & Pseudouridine synthase compare