RNAprotDB

All interfaces > All interologs > Interface groups > group107 > 1R3E_A_C

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

1R3E_A
1R3E_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:24 [THR] C:412 [G] 4.27 90.4
A:24 [THR] C:413 [A] 3.89 C:409 [U] 90.4
A:25 [SER] C:412 [G] 4.97 99.0
A:26 [HIS] C:413 [A] 3.26 C:409 [U] 69.92
A:26 [HIS] C:415 [C] 2.97 base/AA stacks 69.92
A:29 [VAL] C:413 [A] 4.56 C:409 [U] 87.12
A:30 [ASP] C:415 [C] 4.48 55.84
A:33 [ARG] C:415 [C] 3.36 base:SC 84.47
A:39 [ARG] C:416 [C] 4.46 C:408 [G] 71.97
A:40 [LYS] C:416 [C] 4.1 C:408 [G] 88.72
A:40 [LYS] C:417 [A] 3.35 C:407 [U] 88.72
A:41 [VAL] C:413 [A] 4.99 C:409 [U] 82.81
A:41 [VAL] C:415 [C] 4.38 82.81
A:41 [VAL] C:416 [C] 3.26 C:408 [G] 82.81
A:42 [GLY] C:413 [A] 3.87 C:409 [U] 98.73
A:42 [GLY] C:416 [C] 3.45 C:408 [G] 98.73
A:43 [HIS] C:409 [U] 3.79 C:413 [A] 98.89
A:43 [HIS] C:413 [A] 2.92 C:409 [U] base:BB, base:BB base/AA stacks 98.89
A:43 [HIS] C:416 [C] 4.5 C:408 [G] 98.89
A:44 [GLY] C:409 [U] 4.55 C:413 [A] 60.93
A:44 [GLY] C:410 [FHU] 3.81 60.93
A:44 [GLY] C:413 [A] 4.77 C:409 [U] 60.93
A:45 [GLY] C:409 [U] 2.67 C:413 [A] 98.92
A:45 [GLY] C:410 [FHU] 2.58 98.92
A:45 [GLY] C:413 [A] 4.79 C:409 [U] 98.92
A:46 [THR] C:409 [U] 2.43 C:413 [A] sugar:BB 98.2
A:46 [THR] C:410 [FHU] 3.08 98.2
A:46 [THR] C:411 [C] 3.81 98.2
A:46 [THR] C:412 [G] 3.58 98.2
A:47 [LEU] C:410 [FHU] 3.63 98.76
A:48 [ASP] C:410 [FHU] 2.64 base:SC, base:BB, sugar:SC 99.0
A:48 [ASP] C:411 [C] 3.31 99.0
A:49 [PRO] C:411 [C] 4.32 93.2
A:49 [PRO] C:412 [G] 3.26 93.2
A:50 [PHE] C:410 [FHU] 4.95 51.06
A:63 [THR] C:416 [C] 3.48 C:408 [G] 95.72
A:63 [THR] C:417 [A] 2.66 C:407 [U] 95.72
A:64 [ARG] C:417 [A] 4.34 C:407 [U] 85.12
A:64 [ARG] C:418 [C] 3.82 C:406 [G] 85.12
A:66 [LEU] C:416 [C] 3.36 C:408 [G] 66.31
A:66 [LEU] C:417 [A] 4.92 C:407 [U] 66.31
A:67 [GLU] C:417 [A] 3.26 C:407 [U] 43.3
A:67 [GLU] C:418 [C] 2.84 C:406 [G] 43.3
A:70 [LYS] C:408 [G] 2.79 C:416 [C] sugar:SC 41.73
A:70 [LYS] C:409 [U] 3.59 C:413 [A] 41.73
A:70 [LYS] C:410 [FHU] 4.29 41.73
A:74 [LYS] C:410 [FHU] 3.16 98.76
A:76 [TYR] C:410 [FHU] 2.91 98.71
A:88 [THR] C:411 [C] 3.22 94.35
A:90 [ASP] C:411 [C] 2.85 base:SC, base:SC 98.95
A:92 [THR] C:411 [C] 3.16 base:SC 66.0
A:126 [TYR] C:411 [C] 3.36 71.46
A:127 [SER] C:411 [C] 3.63 98.97
A:128 [ALA] C:408 [G] 4.84 C:416 [C] 97.72
A:128 [ALA] C:409 [U] 3.56 C:413 [A] 97.72
A:128 [ALA] C:411 [C] 2.73 97.72
A:128 [ALA] C:412 [G] 4.7 97.72
A:129 [LYS] C:408 [G] 3.7 C:416 [C] 70.46
A:129 [LYS] C:409 [U] 2.68 C:413 [A] 70.46
A:129 [LYS] C:411 [C] 4.45 70.46
A:130 [LYS] C:407 [U] 2.54 C:417 [A] 91.34
A:130 [LYS] C:408 [G] 2.73 C:416 [C] 91.34
A:131 [TYR] C:407 [U] 4.29 C:417 [A] 68.37
A:132 [LYS] C:406 [G] 4.93 C:418 [C] 68.31
A:132 [LYS] C:407 [U] 3.54 C:417 [A] 68.31
A:133 [GLY] C:406 [G] 4.04 C:418 [C] 98.76
A:133 [GLY] C:407 [U] 2.98 C:417 [A] 98.76
A:134 [GLU] C:407 [U] 4.77 C:417 [A] 75.11
A:135 [ARG] C:407 [U] 4.9 C:417 [A] 83.29
A:135 [ARG] C:408 [G] 2.62 C:416 [C] base:SC 83.29
A:135 [ARG] C:409 [U] 2.61 C:413 [A] base:SC, base:SC 83.29
A:135 [ARG] C:413 [A] 4.14 C:409 [U] 83.29
A:135 [ARG] C:414 [U] 2.74 83.29
A:135 [ARG] C:416 [C] 4.34 C:408 [G] 83.29
A:137 [TYR] C:411 [C] 3.53 92.88
A:137 [TYR] C:412 [G] 3.2 92.88
A:137 [TYR] C:413 [A] 3.81 C:409 [U] 92.88
A:137 [TYR] C:414 [U] 3.99 92.88
A:141 [ARG] C:412 [G] 2.54 sugar:SC base/AA stacks 97.29
A:151 [LYS] C:409 [U] 4.5 C:413 [A] 89.92
A:177 [GLY] C:409 [U] 4.39 C:413 [A] 98.92
A:177 [GLY] C:410 [FHU] 4.58 98.92
A:178 [THR] C:410 [FHU] 3.85 base:BB 95.31
A:179 [TYR] C:409 [U] 4.62 C:413 [A] 98.28
A:179 [TYR] C:410 [FHU] 2.69 98.28
A:179 [TYR] C:411 [C] 2.79 98.28
A:180 [ILE] C:410 [FHU] 2.73 base:BB 87.52
A:181 [ARG] C:410 [FHU] 2.55 base:BB, base:SC, sugar:SC 98.97
A:181 [ARG] C:411 [C] 3.67 base/AA stacks 98.97
A:182 [SER] C:410 [FHU] 4.7 89.65
A:200 [LEU] C:410 [FHU] 3.36 97.18
A:202 [ARG] C:410 [FHU] 3.65 98.97
A:313 [LYS] C:417 [A] 3.76 C:407 [U] 56.22
A:313 [LYS] C:418 [C] 2.63 C:406 [G] 56.22

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group107 1R3E_A_C A: tRNA pseudouridine synthase b, Thermotoga maritima (genetically engineered) C: N/A Q9WZW0 PUA domain & Pseudouridine synthase ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1K8W_A_B 1R3E_A_C 0.91 0.9 0.72 0.54 PUA domain & Pseudouridine synthase compare
1R3E_A_C 2AB4_A_B 0.97 0.98 0.48 0.54 PUA domain & Pseudouridine synthase compare